mRNA_2398 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A835YQP6_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP6_9STRA) HSP 1 Score: 239 bits (611), Expect = 3.450e-80 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 354 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA Sbjct: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 118
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A835YRH8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH8_9STRA) HSP 1 Score: 195 bits (496), Expect = 3.600e-62 Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 354 MWSIGVIIYILLGGYPPFH+ QT LFRKIRAG ++FH+EYWG +S++A+DLI+RLLTVD+SKRLTAAEA+VHPWLLSKD DLAARSLEKN EQLKLFNARRKL AAI S+I +YA Sbjct: 28 MWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGSYKFHSEYWGGVSNEAKDLISRLLTVDVSKRLTAAEAVVHPWLLSKDIDLAARSLEKNLEQLKLFNARRKLRAAIKSVIAANKYA 145
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A835YZ60_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ60_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.310e-56 Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 354 MWSIGVIIYILLGGYPPFH+ QT LFRKIRAGKFEFHNEYWGSISSDA+DLI+RLLTVD RLTA EA+ HPWLL+ D+DLAAR+L KN EQLKLFNARRKL AAI S++ R A Sbjct: 223 MWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGKFEFHNEYWGSISSDAKDLISRLLTVDQHSRLTAREAVSHPWLLTSDTDLAARNLGKNLEQLKLFNARRKLRAAIKSVLVARRMA 340
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: D8LP07_ECTSI (Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP07_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.220e-52 Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITT 342 MWSIGVI+YILLGGYPPFH+ QT LFRKI+AG F+FH EYW SIS++A+DLI RLLTVD KRLTAA+A+ HPWLLSKD+DL +L N EQL+LFNARRKL AAI S++ T Sbjct: 31 MWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSISNEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDADLLKHNLGVNLEQLRLFNARRKLRAAIKSVLAT 144
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A6H5K8A8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A8_9PHAE) HSP 1 Score: 169 bits (428), Expect = 3.340e-49 Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITT 342 MWSIGVI+YILLGGYPPFH+ QT LFRKI+AG F+FH EYW S SS+A+DLI RLLTVD KRLTAA+A+ HPWLLSKD DL +L N EQL+LFNARRKL AAI S++ T Sbjct: 241 MWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSTSSEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDDDLLKHNLGVNLEQLRLFNARRKLRAAIKSVLAT 354
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A6H5KCN7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN7_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.160e-42 Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336 MWS+GVIIY LLGGYPPFH+ QT LFR+I+AG F+FH+EYW + S +A+DLI +LL VD +KR+TA +A HPWLL+ LA+ +L KN +QL++FNA RKL AI S+I Sbjct: 108 MWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAKRMTATQAAEHPWLLTTGESLASHNLGKNLDQLRIFNATRKLRGAIQSVI 219
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A7S2LUX3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LUX3_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.560e-40 Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336 MWS+GVIIYI+LGGYPPF E Q LFRKIR G++EFH EYWGS+S+DA+DLI++LLTVD +KRL+ EA+ H W++ S LAA L N +L+ +NA+RK AA+ ++I Sbjct: 51 MWSLGVIIYIILGGYPPFIEQNQRELFRKIRRGQYEFHEEYWGSVSADAKDLISKLLTVDPAKRLSCEEALQHKWMMQDASVLAAADLGTNLSELRKYNAKRKFKAAVQAVI 162
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: D8LK21_ECTSI (Possible Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK21_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.730e-40 Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336 MWS+GVIIY LLGGYPPFH+ QT LFR+I+AG F+FH+EYW + S +A+DLI +LL VD +KR+TA +A HPWLL+ + LA +L KN +QL++FNA RKL AI S+I Sbjct: 265 MWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAKRMTATQAAEHPWLLTTGASLAGHNLGKNLDQLRIFNATRKLRGAIQSVI 376
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A7S2EJ83_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ83_TRICV) HSP 1 Score: 139 bits (350), Expect = 3.620e-40 Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336 MWS+G+I YILLGGYPPF E Q LFRKIR G+FEFH EYWG +S DA+DLI+ LLTVD +R++A EA+ + W+ D DL + L KN E+ K FNARRK AA+ +I Sbjct: 24 MWSLGIITYILLGGYPPFIEQNQRELFRKIRRGQFEFHVEYWGQVSQDAKDLISALLTVDPERRISAREALSNRWICGDDKDLMGKDLGKNLEEFKRFNARRKFKAAVKVVI 135
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA) HSP 1 Score: 145 bits (365), Expect = 7.580e-40 Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1 Query: 1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFR 348 MWSIGVI YILLGGYPPFH+ +Q+ LF KIRAG F FH EYW +S +A+DLI +LLTVD +KR+TAAEA+ HPW+ D LAAR+L+ +L+ FNARRK + + +I+ R Sbjct: 210 MWSIGVITYILLGGYPPFHDEKQSNLFAKIRAGDFVFHPEYWDPVSEEAKDLIRKLLTVDPNKRITAAEAMQHPWVTGADETLAARNLDSQLRELRRFNARRKFRSGVKAIVAANR 325 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2398 ID=mRNA_2398|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_5:1216104..1216859+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTGGAGCATTGGGGTGATCATCTACATCCTGCTGGGCGGCTACCCGCCback to top protein sequence of jgi.p|Trimin1|147961 >Trimin1|147961|gw1.5.233.1 ID=Trimin1|147961|gw1.5.233.1|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQback to top mRNA from alignment at Contig_5:1216104..1216859+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2398 ID=mRNA_2398|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_5:1216104..1216859+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_5:1216104..1216859+ >mRNA_2398 ID=mRNA_2398|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_5:1216104..1216859+ (Tribonema minus UTEX_B_3156 )back to top |