mRNA_2398 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147961
Unique NamemRNA_2398
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A835YQP6_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP6_9STRA)

HSP 1 Score: 239 bits (611), Expect = 3.450e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 354
            MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA
Sbjct:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 118          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A835YRH8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 3.600e-62
Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 354
            MWSIGVIIYILLGGYPPFH+  QT LFRKIRAG ++FH+EYWG +S++A+DLI+RLLTVD+SKRLTAAEA+VHPWLLSKD DLAARSLEKN EQLKLFNARRKL AAI S+I   +YA
Sbjct:   28 MWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGSYKFHSEYWGGVSNEAKDLISRLLTVDVSKRLTAAEAVVHPWLLSKDIDLAARSLEKNLEQLKLFNARRKLRAAIKSVIAANKYA 145          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A835YZ60_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ60_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.310e-56
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFRYA 354
            MWSIGVIIYILLGGYPPFH+  QT LFRKIRAGKFEFHNEYWGSISSDA+DLI+RLLTVD   RLTA EA+ HPWLL+ D+DLAAR+L KN EQLKLFNARRKL AAI S++   R A
Sbjct:  223 MWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGKFEFHNEYWGSISSDAKDLISRLLTVDQHSRLTAREAVSHPWLLTSDTDLAARNLGKNLEQLKLFNARRKLRAAIKSVLVARRMA 340          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: D8LP07_ECTSI (Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP07_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.220e-52
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITT 342
            MWSIGVI+YILLGGYPPFH+  QT LFRKI+AG F+FH EYW SIS++A+DLI RLLTVD  KRLTAA+A+ HPWLLSKD+DL   +L  N EQL+LFNARRKL AAI S++ T
Sbjct:   31 MWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSISNEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDADLLKHNLGVNLEQLRLFNARRKLRAAIKSVLAT 144          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A6H5K8A8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.340e-49
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITT 342
            MWSIGVI+YILLGGYPPFH+  QT LFRKI+AG F+FH EYW S SS+A+DLI RLLTVD  KRLTAA+A+ HPWLLSKD DL   +L  N EQL+LFNARRKL AAI S++ T
Sbjct:  241 MWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSTSSEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDDDLLKHNLGVNLEQLRLFNARRKLRAAIKSVLAT 354          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A6H5KCN7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.160e-42
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336
            MWS+GVIIY LLGGYPPFH+  QT LFR+I+AG F+FH+EYW + S +A+DLI +LL VD +KR+TA +A  HPWLL+    LA+ +L KN +QL++FNA RKL  AI S+I
Sbjct:  108 MWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAKRMTATQAAEHPWLLTTGESLASHNLGKNLDQLRIFNATRKLRGAIQSVI 219          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A7S2LUX3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LUX3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.560e-40
Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336
            MWS+GVIIYI+LGGYPPF E  Q  LFRKIR G++EFH EYWGS+S+DA+DLI++LLTVD +KRL+  EA+ H W++   S LAA  L  N  +L+ +NA+RK  AA+ ++I
Sbjct:   51 MWSLGVIIYIILGGYPPFIEQNQRELFRKIRRGQYEFHEEYWGSVSADAKDLISKLLTVDPAKRLSCEEALQHKWMMQDASVLAAADLGTNLSELRKYNAKRKFKAAVQAVI 162          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: D8LK21_ECTSI (Possible Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK21_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.730e-40
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336
            MWS+GVIIY LLGGYPPFH+  QT LFR+I+AG F+FH+EYW + S +A+DLI +LL VD +KR+TA +A  HPWLL+  + LA  +L KN +QL++FNA RKL  AI S+I
Sbjct:  265 MWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAKRMTATQAAEHPWLLTTGASLAGHNLGKNLDQLRIFNATRKLRGAIQSVI 376          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A7S2EJ83_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ83_TRICV)

HSP 1 Score: 139 bits (350), Expect = 3.620e-40
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSII 336
            MWS+G+I YILLGGYPPF E  Q  LFRKIR G+FEFH EYWG +S DA+DLI+ LLTVD  +R++A EA+ + W+   D DL  + L KN E+ K FNARRK  AA+  +I
Sbjct:   24 MWSLGIITYILLGGYPPFIEQNQRELFRKIRRGQFEFHVEYWGQVSQDAKDLISALLTVDPERRISAREALSNRWICGDDKDLMGKDLGKNLEEFKRFNARRKFKAAVKVVI 135          
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.580e-40
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQDLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNARRKLCAAIHSIITTFR 348
            MWSIGVI YILLGGYPPFH+ +Q+ LF KIRAG F FH EYW  +S +A+DLI +LLTVD +KR+TAAEA+ HPW+   D  LAAR+L+    +L+ FNARRK  + + +I+   R
Sbjct:  210 MWSIGVITYILLGGYPPFHDEKQSNLFAKIRAGDFVFHPEYWDPVSEEAKDLIRKLLTVDPNKRITAAEAMQHPWVTGADETLAARNLDSQLRELRRFNARRKFRSGVKAIVAANR 325          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQP6_9STRA3.450e-80100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YRH8_9STRA3.600e-6278.81Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YZ60_9STRA1.310e-5677.97Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D8LP07_ECTSI3.220e-5271.05Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5K8A8_9PHAE3.340e-4971.05Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KCN7_9PHAE4.160e-4259.82Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2LUX3_9STRA1.560e-4058.04Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
D8LK21_ECTSI1.730e-4059.82Possible Ca2+/calmodulin-dependent protein kinase,... [more]
A0A7S2EJ83_TRICV3.620e-4058.04Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2XV40_9STRA7.580e-4057.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1216104..1216859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147961|gw1.5.233.1
BRITEko00000,ko00001,ko01000,ko01001,ko03019
KEGG Pathwayko04010,ko04114,ko04150,ko04261,ko04668,ko04713,ko04714,ko04720,ko04722,ko04914,ko04931,ko05200,ko05206,ko05219,map04010,map04114,map04150,map04261,map04668,map04713,map04714,map04720,map04722,map04914,map04931,map05200,map05206,map05219
KEGG koko:K04373,ko:K04445
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0603@1|root,KOG0603@2759|Eukaryota
Evalue1.04e-39
Seed ortholog2880.D8LE50
Hectar predicted targeting categoryother localisation
TranscriptId148283
TrackFilteredModels1
ProteinId147961
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147961gene_2398Tribonema minus UTEX_B_3156 geneContig_5 1216104..1216859 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2398_1exon_2398_1Tribonema minus UTEX_B_3156 exonContig_5 1216104..1216292 +
exon_2398_2exon_2398_2Tribonema minus UTEX_B_3156 exonContig_5 1216695..1216859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2398CDS_2398Tribonema minus UTEX_B_3156 CDSContig_5 1216104..1216292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147961Trimin1|147961|gw1.5.233.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1216104..1216859 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2398 ID=mRNA_2398|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_5:1216104..1216859+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGCATTGGGGTGATCATCTACATCCTGCTGGGCGGCTACCCGCC
GTTCCACGAGAACAGGCAGACACTCCTGTTCCGCAAGATTCGCGCGGGCA
AGTTTGAGTTCCACAACGAGTACTGGGGCAGCATCTCCAGCGACGCCCAG
GACCTCATCACCAGGCTCCTGACGGTCGACATCAGCAAGCGGCTCACGGC
GGCGGAGGCCATCGTACACCCGTGGCTGCTGAGCAAGGACAGCGACCTCG
CCGCGCGCAGCCTCGAGAAGAATTTCGAGCAGCTCAAGCTGTTCAACGCG
CGGCGCAAGCTGTGCGCCGCCATCCACAGCATCATTACCACCTTCCGTTA
CGCC
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protein sequence of jgi.p|Trimin1|147961

>Trimin1|147961|gw1.5.233.1 ID=Trimin1|147961|gw1.5.233.1|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
MWSIGVIIYILLGGYPPFHENRQTLLFRKIRAGKFEFHNEYWGSISSDAQ
DLITRLLTVDISKRLTAAEAIVHPWLLSKDSDLAARSLEKNFEQLKLFNA
RRKLCAAIHSIITTFRYA
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mRNA from alignment at Contig_5:1216104..1216859+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2398 ID=mRNA_2398|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_5:1216104..1216859+ (Tribonema minus UTEX_B_3156 )
ATGTGGAGCATTGGGGTGATCATCTACATCCTGCTGGGCGGCTACCCGCC GTTCCACGAGAACAGGCAGACACTCCTGTTCCGCAAGATTCGCGCGGGCA AGTTTGAGTTCCACAACGAGTACTGGGGCAGCATCTCCAGCGACGCCCAG GACCTCATCACCAGGCTCCTGACGGTCGACATCAGCAAGGTGACATGGAG CTCGATCGTCATGATGTGTTTTTGACTGTACAACACAAAAAAACTGAGTC GGAGTATCATGGGCGTCAGCAACTTGAAGGCGACTCATAGAGGAATTGAA AAGGATGGGAAGTTTTGCAACACACTTCAAGAAATTAAAAAGACACCTGA GTTGAAGTATGAATGTGAAATTCCCATATGCGAAGGAAGTGGTCTGAAGT ACCAGCGGTCGGTCTGCAAGTTGTCGTTCTCGTGTGCACAGGCTCAACAG CTCATGGCAGCGGAGGCTCTCGTGCACGCACGAGTTGTTGCCTGGCATCA GACACAGCGCAGATCGTCACACTTATTGCCGCCGTCACCTGCCCCGCACC GCCTCTCCCCCAACCGCAACTATCCCCCCTCCCCCCTGCAGCGGCTCACG GCGGCGGAGGCCATCGTACACCCGTGGCTGCTGAGCAAGGACAGCGACCT CGCCGCGCGCAGCCTCGAGAAGAATTTCGAGCAGCTCAAGCTGTTCAACG CGCGGCGCAAGCTGTGCGCCGCCATCCACAGCATCATTACCACCTTCCGT TACGCC
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Coding sequence (CDS) from alignment at Contig_5:1216104..1216859+

>mRNA_2398 ID=mRNA_2398|Name=jgi.p|Trimin1|147961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_5:1216104..1216859+ (Tribonema minus UTEX_B_3156 )
ATGTGGAGCATTGGGGTGATCATCTACATCCTGCTGGGCGGCTACCCGCC
GTTCCACGAGAACAGGCAGACACTCCTGTTCCGCAAGATTCGCGCGGGCA
AGTTTGAGTTCCACAACGAGTACTGGGGCAGCATCTCCAGCGACGCCCAG
GACCTCATCACCAGGCTCCTGACGGTCGACATCAGCAAGCGGCTCACGGC
GGCGGAGGCCATCGTACACCCGTGGCTGCTGAGCAAGGACAGCGACCTCG
CCGCGCGCAGCCTCGAGAAGAATTTCGAGCAGCTCAAGCTGTTCAACGCG
CGGCGCAAGCTGTGCGCCGCCATCCACAGCATCATTACCACCTTCCGTTA
CGCC
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