mRNA_2385 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|158172
Unique Name	mRNA_2385
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|158172 vs. uniprot
Match: A0A835YZ50_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ50_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.400e-45
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1

Query:    1 MDGKWTPLAPLQQQPGEAHARTNLEHVXXXXXXXXXXXXXXCTHGLARDCNGTGSKGNYMCAHGRSCYTCRECGRPAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAKXXXXXXXXXXXXXXXSSVXAXXHRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPALTAVCPHGRKSRXXXXXXXXXXQAGRQRSQ 693
            MDGKWTPLAPLQQQPGEAHARTNLEHVXXXXXXXXXXXXXXCTHGLARDCNGTGSKGNYMCAHGRSCYTCRECGRPAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAKXXXXXXXXXXXXXXXSSVXAXXHRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPALTAVCPHGRKSRXXXXXXXXXXQAGRQRSQ
Sbjct:    1 MDGKWTPLAPLQQQPGEAHARTNLEHVXXXXXXXXXXXXXXCTHGLARDCNGTGSKGNYMCAHGRSCYTCRECGRPAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAKXXXXXXXXXXXXXXXSSVXAXXHRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPALTAVCPHGRKSRXXXXXXXXXXQAGRQRSQ 231

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|158172 vs. uniprot

BLAST of jgi.p|Trimin1|158172 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YZ50_9STRA	3.400e-45	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_5	contig	Contig_5:1112028..1114064 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|158172\|e_gw1.5.42.1
Hectar predicted targeting category	other localisation
TranscriptId	158494
Track	FilteredModels1
ProteinId	158172

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|158172	gene_2385	Tribonema minus UTEX_B_3156	gene	Contig_5 1112028..1114064 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_2385_1	exon_2385_1	Tribonema minus UTEX_B_3156	exon	Contig_5 1112028..1112690 +
exon_2385_2	exon_2385_2	Tribonema minus UTEX_B_3156	exon	Contig_5 1114035..1114064 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_2385	CDS_2385	Tribonema minus UTEX_B_3156	CDS	Contig_5 1112028..1112690 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|158172	Trimin1\|158172\|e_gw1.5.42.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_5 1112028..1114064 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_5:1112028..1114064+
coding sequence from alignment at Contig_5:1112028..1114064+

spliced messenger RNA

>mRNA_2385 ID=mRNA_2385|Name=jgi.p|Trimin1|158172|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_5:1112028..1114064+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGAAAATGGACTCCATTGGCGCCGCTGCAACAACAGCCCGGCGA
AGCGCATGCACGCACAAATTTGGAGCACGTGGACGGCGAATGGACTCCAT
TGGCGCCGCTGCGACAACAGCCGTGCACACATGGGCTGGCACGAGATTGC
AACGGCACAGGCAGCAAGGGAAACTACATGTGCGCGCACGGGCGGAGTTG
CTACACCTGCAGGGAGTGCGGCAGGCCTGCCTTCTGCACGCACGGGCAGC
GGCGCTCACAGTGCAGGAAGTGCCGCGGCAGTGCCATCTGCGCACACGGG
CACCGGCGCTACTACTGCAAGGACTGCGGCGGCAAAGGCATCTGCGAGCA
CGGACACTGCCGCTTGGCGTGCGGGGAGTGCGGTGTCGCCAAGTGCTCGC
ACGGGCAGCGGCGCTCACAGTGCAAGGAGTGCCACGGCAGTTCCGTCTGT
GCACACGGACACCGGCGCGCGCAGTGCACGGAGTGCAGCGGCTCTTCCAT
CTGCGCACACGGGCGGCGGCGCTACTATTGCAAGGACTGCGGCGGGAAAG
GCATCTGCGTGCACAGGCAGCTCCGGCGGAAATGCGAGACGTGCGACCCG
GCGCTGACGGCGGTGTGTCCGCACGGGCGGAAGAGCCGGTGCAAGGCTTG
CGGCGGCAAGCCCCTCTGTCAGGCTGGGCGGCAGCGGTCCCAG

protein sequence of jgi.p|Trimin1|158172

>Trimin1|158172|e_gw1.5.42.1 ID=Trimin1|158172|e_gw1.5.42.1|Name=jgi.p|Trimin1|158172|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MDGKWTPLAPLQQQPGEAHARTNLEHVDGEWTPLAPLRQQPCTHGLARDC
NGTGSKGNYMCAHGRSCYTCRECGRPAFCTHGQRRSQCRKCRGSAICAHG
HRRYYCKDCGGKGICEHGHCRLACGECGVAKCSHGQRRSQCKECHGSSVC
AHGHRRAQCTECSGSSICAHGRRRYYCKDCGGKGICVHRQLRRKCETCDP
ALTAVCPHGRKSRCKACGGKPLCQAGRQRSQ

mRNA from alignment at Contig_5:1112028..1114064+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2385 ID=mRNA_2385|Name=jgi.p|Trimin1|158172|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2037bp|location=Sequence derived from alignment at Contig_5:1112028..1114064+ (Tribonema minus UTEX_B_3156 )
ATGGACGGAAAATGGACTCCATTGGCGCCGCTGCAACAACAGCCCGGCGA
AGCGCATGCACGCACAAATTTGGAGCACGTGGACGGCGAATGGACTCCAT
TGGCGCCGCTGCGACAACAGCCGTGCACACATGGGCTGGCACGAGATTGC
AACGGCACAGGCAGCAAGGGAAACTACATGTGCGCGCACGGGCGGAGTTG
CTACACCTGCAGGGAGTGCGGCAGGCCTGCCTTCTGCACGCACGGGCAGC
GGCGCTCACAGTGCAGGAAGTGCCGCGGCAGTGCCATCTGCGCACACGGG
CACCGGCGCTACTACTGCAAGGACTGCGGCGGCAAAGGCATCTGCGAGCA
CGGACACTGCCGCTTGGCGTGCGGGGAGTGCGGTGTCGCCAAGTGCTCGC
ACGGGCAGCGGCGCTCACAGTGCAAGGAGTGCCACGGCAGTTCCGTCTGT
GCACACGGACACCGGCGCGCGCAGTGCACGGAGTGCAGCGGCTCTTCCAT
CTGCGCACACGGGCGGCGGCGCTACTATTGCAAGGACTGCGGCGGGAAAG
GCATCTGCGTGCACAGGCAGCTCCGGCGGAAATGCGAGACGTGCGACCCG
GCGCTGACGGCGGTGTGTCCGCACGGGCGGAAGAGCCGGTGCAAGGCTTG
CGGCGGCAAGCCCGTCAAGGACGCTGCTGCGGGGAAGCGGGCCAGCGGCA
CAGCGTAGCTGCAGCGGCGGGCTGGTGACAGACTAGCAGCTGGAGCCGCC
ATGACTACGATGGCTATTGCCGTACCAGGGCCTAGCCAGGAGCGAACGGC
AGCAGTGAAGTATTGCGGGAGGTCTGGCAGTCCGGACAAAGAGTCACTGG
CATTTTTTTTTATGCTGTGCTCAGTAGGCTAGTTGAACATTATCATCATC
ATCATCAAGCTATTGGAGTGGGGGCCAGGTGCCACAGTGGGCAAACTCGG
CAGTTGATCAGCAATGCAGCGCCGCAGTATGAGCCTCAACGGCCGTGGGC
TGCCCGCGGCGGAAGGAGAAATCGCTGCGTAGAGGCTGATCAAGTGATCA
AACAGCAGGCACACAATCACGACACTTGCAGGCAACAAGGTCCTGAGGAT
GTTTTGCATGCAATTGTCTTCTCTGTTTGATGGGTGGCAGAGGGTGTCTA
TGAGCGGCACAACATACACCCAGCGCATGGCTAGCGTTGCTCAACTGTGC
TCTGGAAATGTGAGCGACAACACAGCCATATTCTGGTAGCTTTTTGTGCA
ACTGACCAGCTAACGCACAGGAAAGGCGGTGTTAAAGTACGCAAGACCTC
AGAGCTGCGATAATACAAACACTCTGCTGCAGCGGTGTGGTGCATGGCAT
TTTGTAGCCACAGCATGAAGATGCCAGTGGCGCTTTCCTGCTCGGCGAGC
AGAGGCGGCCACAATGATGCAAAGACGTTTCTCGGTTGTATACTGGTGCA
CCCGCGCATGCAGATCAGTCACTGATATACCCTGCACCATCGTCATCAGA
ATCGCCGAAGTAGTCCCAAAGCTCAATGGCCCGGCTTACTACAGCATATG
GATATGATCGCGGGCAACTTACGTACGCCAACGGCAATACCGGCACTGGG
TGCATGTACTTGTTTCCTATGCGCAGCGTTTTGAGACCCTCCGGCAAGTG
CAAACGGTGCGTGTAACTGTCACCGATGGCCAACTTTTGCAGGGTCTCCG
GAAGCTCGACAGGCAAGTTGAAGCTGTCCCCCGTCGCGAATGTCCGCAGC
GCTGGCGGCAGAGCGCACTGCAGCGGCTGGTTGAATGCGTCCCCCAGCAG
CAGCACCGCCAGAGTTGGGGGCAGCGCCTGCAGCGGCTGGTTGAAGGCAT
CGCCAAGCCGCAGCTCCTGCAGCGCAGGCGGCAGCGCTCCGAGCGGAAAG
TCGAAGAAGTCGCAGCTGCTGAGGTCAAGCACGCGCAGCGACGCGGGCAG
CGGCCCCAGCGGGCAGTTGAAGCGGCATGTGGGGTAGTAGATAGTGTCGA
AGCGCAGCTCTGTCAGGCTGGGCGGCAGCGGTCCCAG

Coding sequence (CDS) from alignment at Contig_5:1112028..1114064+

>mRNA_2385 ID=mRNA_2385|Name=jgi.p|Trimin1|158172|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_5:1112028..1114064+ (Tribonema minus UTEX_B_3156 )
ATGGACGGAAAATGGACTCCATTGGCGCCGCTGCAACAACAGCCCGGCGA
AGCGCATGCACGCACAAATTTGGAGCACGTGGACGGCGAATGGACTCCAT
TGGCGCCGCTGCGACAACAGCCGTGCACACATGGGCTGGCACGAGATTGC
AACGGCACAGGCAGCAAGGGAAACTACATGTGCGCGCACGGGCGGAGTTG
CTACACCTGCAGGGAGTGCGGCAGGCCTGCCTTCTGCACGCACGGGCAGC
GGCGCTCACAGTGCAGGAAGTGCCGCGGCAGTGCCATCTGCGCACACGGG
CACCGGCGCTACTACTGCAAGGACTGCGGCGGCAAAGGCATCTGCGAGCA
CGGACACTGCCGCTTGGCGTGCGGGGAGTGCGGTGTCGCCAAGTGCTCGC
ACGGGCAGCGGCGCTCACAGTGCAAGGAGTGCCACGGCAGTTCCGTCTGT
GCACACGGACACCGGCGCGCGCAGTGCACGGAGTGCAGCGGCTCTTCCAT
CTGCGCACACGGGCGGCGGCGCTACTATTGCAAGGACTGCGGCGGGAAAG
GCATCTGCGTGCACAGGCAGCTCCGGCGGAAATGCGAGACGTGCGACCCG
GCGCTGACGGCGGTGTGTCCGCACGGGCGGAAGAGCCGGTGCAAGGCTTG
CGGCGGCAAGCCCCTCTGTCAGGCTGGGCGGCAGCGGTCCCAG