mRNA_2374 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158253
Unique NamemRNA_2374
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A836CBN9_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.130e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 MPPRRAPRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            MPPRRAPRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG
Sbjct:    1 MPPRRAPRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 97
[Close]
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A7L2ACY7_9GRUI (Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7L2ACY7_9GRUI)

HSP 1 Score: 151 bits (381), Expect = 1.080e-45
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVT++DVV ALKRQGRP+YGFG
Sbjct:   17 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRPLYGFG 102
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BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A6P3IRS0_BISBI (Histone H4 n=1 Tax=Bison bison bison TaxID=43346 RepID=A0A6P3IRS0_BISBI)

HSP 1 Score: 151 bits (381), Expect = 1.080e-45
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRHGK LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVT++DVV ALKRQGR +YGFG
Sbjct:   17 KRHGKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102
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BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A091UMG0_PHALP (Histone H4 (Fragment) n=3 Tax=Euteleostomi TaxID=117571 RepID=A0A091UMG0_PHALP)

HSP 1 Score: 150 bits (379), Expect = 1.520e-45
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:   31 PKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            PKRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVT++DVV ALKRQGR +YGFG
Sbjct:    4 PKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 90
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BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A671YEN9_SPAAU (Histone H4 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671YEN9_SPAAU)

HSP 1 Score: 150 bits (378), Expect = 3.400e-45
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:   16 APRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            AP    KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVT++DVV ALKRQGR +YGFG
Sbjct:   14 APSVTVKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 105
[Close]
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A8H7QSM7_9FUNG (Histone H4 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QSM7_9FUNG)

HSP 1 Score: 149 bits (377), Expect = 4.020e-45
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVTSLDVV ALKRQGR +YGFG
Sbjct:   14 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 99
[Close]
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A015N4X9_RHIIW (Histone H4 n=17 Tax=Eukaryota TaxID=2759 RepID=A0A015N4X9_RHIIW)

HSP 1 Score: 149 bits (377), Expect = 4.410e-45
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVTSLDVV ALKRQGR +YGFG
Sbjct:   17 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A168QLX8_ABSGL (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=A0A168QLX8_ABSGL)

HSP 1 Score: 149 bits (377), Expect = 4.410e-45
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVTSLDVV ALKRQGR +YGFG
Sbjct:   17 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: A0A8H7ZZZ6_9FUNG (Histone H4 n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZZZ6_9FUNG)

HSP 1 Score: 149 bits (377), Expect = 4.550e-45
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVTSLDVV ALKRQGR +YGFG
Sbjct:   18 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 103
[Close]
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Match: F4P7A4_BATDJ (Histone H4 n=4 Tax=Batrachochytrium TaxID=100474 RepID=F4P7A4_BATDJ)

HSP 1 Score: 149 bits (377), Expect = 4.830e-45
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   34 KRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEARGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG 291
            KRH K LRDNIQGITKPAIRRL RRGGVKRISGLIYEE RGVLKVFLENV+ DAVTYTEHAKRKTVTSLDVV ALKRQGR +YGFG
Sbjct:   20 KRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 105
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158253 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBN9_9STRA2.130e-62100.00Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A7L2ACY7_9GRUI1.080e-4588.37Histone H4 (Fragment) n=2 Tax=Amniota TaxID=32524 ... [more]
A0A6P3IRS0_BISBI1.080e-4588.37Histone H4 n=1 Tax=Bison bison bison TaxID=43346 R... [more]
A0A091UMG0_PHALP1.520e-4587.36Histone H4 (Fragment) n=3 Tax=Euteleostomi TaxID=1... [more]
A0A671YEN9_SPAAU3.400e-4583.70Histone H4 n=1 Tax=Sparus aurata TaxID=8175 RepID=... [more]
A0A8H7QSM7_9FUNG4.020e-4589.53Histone H4 n=1 Tax=Mucor saturninus TaxID=64648 Re... [more]
A0A015N4X9_RHIIW4.410e-4589.53Histone H4 n=17 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A168QLX8_ABSGL4.410e-4589.53Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A8H7ZZZ6_9FUNG4.550e-4589.53Histone H4 n=1 Tax=Olpidium bornovanus TaxID=27868... [more]
F4P7A4_BATDJ4.830e-4589.53Histone H4 n=4 Tax=Batrachochytrium TaxID=100474 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1035640..1035930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158253|e_gw1.5.141.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11254
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0008213,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0032993,GO:0034293,GO:0034622,GO:0034728,GO:0034729,GO:0034968,GO:0036211,GO:0040029,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043596,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044815,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051704,GO:0060255,GO:0061587,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Preferred nameHHF1
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
COG categoryB
Max annot lvl4751|Fungi
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,3A1HI@33154|Opisthokonta,3P3ZX@4751|Fungi
Evalue7.93e-46
Seed ortholog109871.XP_006680247.1
Hectar predicted targeting categoryother localisation
TranscriptId158575
TrackFilteredModels1
ProteinId158253
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158253gene_2374Tribonema minus UTEX_B_3156 geneContig_5 1035640..1035930 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2374_1exon_2374_1Tribonema minus UTEX_B_3156 exonContig_5 1035640..1035930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2374CDS_2374Tribonema minus UTEX_B_3156 CDSContig_5 1035640..1035930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158253Trimin1|158253|e_gw1.5.141.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1035640..1035930 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2374 ID=mRNA_2374|Name=jgi.p|Trimin1|158253|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_5:1035640..1035930+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCGACGTGCGCCGCGAACGCTACCAAAGAGACACGGGAAAAA
GTTGCGTGACAACATACAGGGCATCACAAAGCCCGCCATTCGCCGCCTCT
GTCGCCGCGGTGGAGTGAAGCGCATCAGCGGCCTGATATACGAGGAGGCC
CGTGGCGTCCTGAAGGTATTCCTGGAGAACGTCGTCTGCGACGCCGTCAC
GTACACCGAGCACGCCAAGCGCAAGACGGTGACCTCCCTCGACGTGGTTC
TGGCGCTCAAACGGCAGGGGCGACCCATTTACGGATTCGGT
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protein sequence of jgi.p|Trimin1|158253

>Trimin1|158253|e_gw1.5.141.1 ID=Trimin1|158253|e_gw1.5.141.1|Name=jgi.p|Trimin1|158253|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
MPPRRAPRTLPKRHGKKLRDNIQGITKPAIRRLCRRGGVKRISGLIYEEA
RGVLKVFLENVVCDAVTYTEHAKRKTVTSLDVVLALKRQGRPIYGFG
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mRNA from alignment at Contig_5:1035640..1035930+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2374 ID=mRNA_2374|Name=jgi.p|Trimin1|158253|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_5:1035640..1035930+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCGCGACGTGCGCCGCGAACGCTACCAAAGAGACACGGGAAAAA
GTTGCGTGACAACATACAGGGCATCACAAAGCCCGCCATTCGCCGCCTCT
GTCGCCGCGGTGGAGTGAAGCGCATCAGCGGCCTGATATACGAGGAGGCC
CGTGGCGTCCTGAAGGTATTCCTGGAGAACGTCGTCTGCGACGCCGTCAC
GTACACCGAGCACGCCAAGCGCAAGACGGTGACCTCCCTCGACGTGGTTC
TGGCGCTCAAACGGCAGGGGCGACCCATTTACGGATTCGGT
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Coding sequence (CDS) from alignment at Contig_5:1035640..1035930+

>mRNA_2374 ID=mRNA_2374|Name=jgi.p|Trimin1|158253|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_5:1035640..1035930+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCGCGACGTGCGCCGCGAACGCTACCAAAGAGACACGGGAAAAA
GTTGCGTGACAACATACAGGGCATCACAAAGCCCGCCATTCGCCGCCTCT
GTCGCCGCGGTGGAGTGAAGCGCATCAGCGGCCTGATATACGAGGAGGCC
CGTGGCGTCCTGAAGGTATTCCTGGAGAACGTCGTCTGCGACGCCGTCAC
GTACACCGAGCACGCCAAGCGCAAGACGGTGACCTCCCTCGACGTGGTTC
TGGCGCTCAAACGGCAGGGGCGACCCATTTACGGATTCGGT
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