mRNA_2369 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158184
Unique NamemRNA_2369
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158184 vs. uniprot
Match: A0A835YZ39_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ39_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.090e-13
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 MKAHVKGVHLKIKTVICTEDGCTRKFTSKQHMQ 99
            MKAHVKGVHLKIKTVICTEDGCTRKFTSKQHMQ
Sbjct:    1 MKAHVKGVHLKIKTVICTEDGCTRKFTSKQHMQ 33
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158184 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZ39_9STRA4.090e-13100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1027438..1027929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158184|e_gw1.5.187.1
Hectar predicted targeting categoryother localisation
TranscriptId158506
TrackFilteredModels1
ProteinId158184
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158184gene_2369Tribonema minus UTEX_B_3156 geneContig_5 1027438..1027929 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2369_1exon_2369_1Tribonema minus UTEX_B_3156 exonContig_5 1027438..1027929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2369CDS_2369Tribonema minus UTEX_B_3156 CDSContig_5 1027438..1027929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158184Trimin1|158184|e_gw1.5.187.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1027438..1027929 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2369 ID=mRNA_2369|Name=jgi.p|Trimin1|158184|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_5:1027438..1027929+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCTCACGTCAAAGGCGTCCACCTGAAAATCAAGACTGTGATCTG
CACTGAAGATGGGTGCACCCGAAAGTTCACATCCAAGCAACATATGCAGA
GTCACGTCAGCGCCGTTCACCACGGAGTCAAGAACATCGTGTGCACTGAA
GAAGGGTGCTCACAAAGGTTTTCCATTCCTCAAAACATGGCAACACACAT
CAAAGCCGTTCACCGCGGAATTCAGGACATGATGTGCACTGAAGACGGGT
GCACACAAAAGTTCTTCAGGAAAGAGCATATGCAAAAACACGTCAACACC
ATACATCTGAAAACCAAGGATGTGGCGTGTGAACACAAGGGATGCTTACA
ACTGTTTTCCGACGCCGGCAACATGAGAAAGCACGTGAAATTTGTTCACC
TCAAAGTGAAAGACGTGCCGTGCACTCAGGAGGGCTGCGCACAGATGTTC
AGCGGCGGTGGCAACATGCGGCACCACGTCAAGGCTGTGCAC
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protein sequence of jgi.p|Trimin1|158184

>Trimin1|158184|e_gw1.5.187.1 ID=Trimin1|158184|e_gw1.5.187.1|Name=jgi.p|Trimin1|158184|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=164bp
MKAHVKGVHLKIKTVICTEDGCTRKFTSKQHMQSHVSAVHHGVKNIVCTE
EGCSQRFSIPQNMATHIKAVHRGIQDMMCTEDGCTQKFFRKEHMQKHVNT
IHLKTKDVACEHKGCLQLFSDAGNMRKHVKFVHLKVKDVPCTQEGCAQMF
SGGGNMRHHVKAVH
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mRNA from alignment at Contig_5:1027438..1027929+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2369 ID=mRNA_2369|Name=jgi.p|Trimin1|158184|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_5:1027438..1027929+ (Tribonema minus UTEX_B_3156 )
ATGAAGGCTCACGTCAAAGGCGTCCACCTGAAAATCAAGACTGTGATCTG
CACTGAAGATGGGTGCACCCGAAAGTTCACATCCAAGCAACATATGCAGA
GTCACGTCAGCGCCGTTCACCACGGAGTCAAGAACATCGTGTGCACTGAA
GAAGGGTGCTCACAAAGGTTTTCCATTCCTCAAAACATGGCAACACACAT
CAAAGCCGTTCACCGCGGAATTCAGGACATGATGTGCACTGAAGACGGGT
GCACACAAAAGTTCTTCAGGAAAGAGCATATGCAAAAACACGTCAACACC
ATACATCTGAAAACCAAGGATGTGGCGTGTGAACACAAGGGATGCTTACA
ACTGTTTTCCGACGCCGGCAACATGAGAAAGCACGTGAAATTTGTTCACC
TCAAAGTGAAAGACGTGCCGTGCACTCAGGAGGGCTGCGCACAGATGTTC
AGCGGCGGTGGCAACATGCGGCACCACGTCAAGGCTGTGCAC
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Coding sequence (CDS) from alignment at Contig_5:1027438..1027929+

>mRNA_2369 ID=mRNA_2369|Name=jgi.p|Trimin1|158184|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=492bp|location=Sequence derived from alignment at Contig_5:1027438..1027929+ (Tribonema minus UTEX_B_3156 )
ATGAAGGCTCACGTCAAAGGCGTCCACCTGAAAATCAAGACTGTGATCTG
CACTGAAGATGGGTGCACCCGAAAGTTCACATCCAAGCAACATATGCAGA
GTCACGTCAGCGCCGTTCACCACGGAGTCAAGAACATCGTGTGCACTGAA
GAAGGGTGCTCACAAAGGTTTTCCATTCCTCAAAACATGGCAACACACAT
CAAAGCCGTTCACCGCGGAATTCAGGACATGATGTGCACTGAAGACGGGT
GCACACAAAAGTTCTTCAGGAAAGAGCATATGCAAAAACACGTCAACACC
ATACATCTGAAAACCAAGGATGTGGCGTGTGAACACAAGGGATGCTTACA
ACTGTTTTCCGACGCCGGCAACATGAGAAAGCACGTGAAATTTGTTCACC
TCAAAGTGAAAGACGTGCCGTGCACTCAGGAGGGCTGCGCACAGATGTTC
AGCGGCGGTGGCAACATGCGGCACCACGTCAAGGCTGTGCAC
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