mRNA_2365 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158138
Unique NamemRNA_2365
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA)

HSP 1 Score: 305 bits (780), Expect = 4.310e-104
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAAAXXXXXXXXXXXXXXXXXGVEESKTDE 525
            MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAAAXXXXXXXXXXXXXXXXXGVEESKTDE
Sbjct:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAAAXXXXXXXXXXXXXXXXXGVEESKTDE 175
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.090e-82
Identity = 122/148 (82.43%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAA 444
            MNSRKPVPHHLTDSSQRYCVMTVVAP GTNQK++EL IRVHGC+ES+AEANRWA+ LR+ N FFDVY LKTNEWAPLPPR+DEID+VNFTDGRVQAVFDSHREHQKG+K+EM++RLAQAHEEKTQRAALKASEEF ++ ++VA E AA
Sbjct:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAA 148
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A836CEP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 5.230e-75
Identity = 111/149 (74.50%), Postives = 133/149 (89.26%), Query Frame = 1 
Query:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAAA 447
            MNSRKPVPHHLTDSSQRYCVMT+VAP GTNQKA++L IRVHGCRE++AEANRWAK++R++N FFDV+ LKTN WA LPP ++EIDNVN TDGRVQA+ DSHREH+KG K+EM++RLAQAHE+K +RAALKA+EEF  I E  A+E+AAA
Sbjct:   15 MNSRKPVPHHLTDSSQRYCVMTIVAPHGTNQKAEQLTIRVHGCRETMAEANRWAKAIRDDNTFFDVFCLKTNAWAALPPNVNEIDNVNMTDGRVQAILDSHREHEKGTKREMVERLAQAHEDKARRAALKANEEFKGIVEGAAEENAAA 163
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA)

HSP 1 Score: 152 bits (384), Expect = 7.340e-45
Identity = 69/101 (68.32%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   46 QRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRL 348
            QR+CVMTVVAP GTNQK+++++IRV+GC+E+LAEANRWAKS+R+  + +DVY +KTN WAPLPPRI EID V FTD RVQAV DS+ EHQ+G+K++MM+RL
Sbjct:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.240e-38
Identity = 66/129 (51.16%), Postives = 98/129 (75.97%), Query Frame = 1 
Query:   16 PVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEE----KTQRAALK 390
            PV   L D+ Q+Y V+++VAP GT QK+K+++IR++GCR ++ +AN +A+ LR+ NNFFDVYT++T+EWAPLPPRID I++V  TD R+Q++ DS+ EH KG+K E+++RL    +E    + QR ALK
Sbjct:    2 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALK 130
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.020e-37
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    4 NSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKE 333
            ++R+PVP  L D  QR+CV+TVVAP GT Q+ K++LIR+HGC+E+  EA+ WA+SLR+ N+F+DVY   TNEW PLPP +  ++ V FTD RVQ + D+     KGEK E
Sbjct:   15 DARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.550e-28
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:   16 PVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQ 354
            PVP  L +  Q + V++V+AP+GTNQ A +L+IRV+GC ++L  AN +A+SLR+ N+ +DV  +   EW PLPP  +EID VN+TD RV  + +++  H KGEK  M++RL Q
Sbjct:   19 PVPDRLKNPKQNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKAAMIERLQQ 131
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A6G6XP11_9PHYC (Uncharacterized protein n=1 Tax=Dishui Lake phycodnavirus 4 TaxID=2704072 RepID=A0A6G6XP11_9PHYC)

HSP 1 Score: 59.7 bits (143), Expect = 1.410e-7
Identity = 28/95 (29.47%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   31 LTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQ 315
            L    Q+Y V++ + P    QK ++  I++ GC ++  EA + A  L+ E+  FD+Y     +W  +PP   +ID+V++T+ ++Q + + ++E+Q
Sbjct:   38 LVVPGQKYVVLSCIGPEAP-QKHEKFGIKIRGCFDTQDEAAKHAAKLQAEDPTFDIYVSDMYQWVLIPPDPSKIDDVHYTNDKLQEIMNGYKENQ 131
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BLAST of jgi.p|Trimin1|158138 vs. uniprot
Match: A0A835YPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.880e-5
Identity = 24/56 (42.86%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  235 PRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEE 402
            P + +IDNV FTD R+Q++ DS+ +H KG+K++M++RL +   ++T  AA  A+ E
Sbjct:   54 PHVTQIDNVQFTDSRIQSIRDSYIDHVKGQKRDMIERLEEVDRQRTAEAAATAAVE 109
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158138 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YQY9_9STRA4.310e-104100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEC6_9STRA1.090e-8282.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEP3_9STRA5.230e-7574.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF96_9STRA7.340e-4568.32Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4I9_9STRA2.240e-3851.16Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CNB8_9STRA4.020e-3753.64Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6B0_9STRA2.550e-2847.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G6XP11_9PHYC1.410e-729.47Uncharacterized protein n=1 Tax=Dishui Lake phycod... [more]
A0A835YPU8_9STRA5.880e-542.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1019792..1020319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158138|e_gw1.5.323.1
Max annot lvl10239|Viruses
EggNOG OGs4QE6F@10239|Viruses,4QXY1@35237|dsDNA viruses no RNA stage
Evalue5.95e-09
Seed ortholog97195.Q91DI1_HAV01
Hectar predicted targeting categoryother localisation
TranscriptId158460
TrackFilteredModels1
ProteinId158138
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158138gene_2365Tribonema minus UTEX_B_3156 geneContig_5 1019792..1020319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2365_1exon_2365_1Tribonema minus UTEX_B_3156 exonContig_5 1019792..1020319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2365CDS_2365Tribonema minus UTEX_B_3156 CDSContig_5 1019792..1020319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158138Trimin1|158138|e_gw1.5.323.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1019792..1020319 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2365 ID=mRNA_2365|Name=jgi.p|Trimin1|158138|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_5:1019792..1020319- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCGCGCAAGCCCGTCCCACACCACCTCACCGACTCGTCACAGCG
TTACTGTGTGATGACAGTCGTCGCGCCGTCCGGCACGAATCAGAAAGCAA
AGGAGCTTTTGATTCGTGTTCATGGCTGCCGCGAATCGTTGGCTGAAGCC
AACAGGTGGGCGAAGAGCCTTCGCAATGAAAACAATTTCTTTGATGTGTA
CACACTCAAGACGAATGAGTGGGCACCTCTGCCGCCCCGCATCGATGAGA
TCGACAATGTCAACTTCACGGATGGCAGAGTTCAGGCTGTGTTCGATTCA
CACCGCGAGCACCAGAAGGGTGAGAAAAAAGAGATGATGCAGCGCCTCGC
ACAAGCGCACGAAGAGAAGACGCAGCGCGCGGCGCTCAAAGCGAGCGAGG
AGTTCGGAAAGATCGCTGAAGAAGTCGCACAGGAGGACGCTGCTGCGCAG
AAGGAGGACGCTGTCGTGGAGGAGGAGGAAGTCGCCCCTGAGGATGAGGG
TGTGGAGGAGAGCAAGACCGACGAGTGA
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protein sequence of jgi.p|Trimin1|158138

>Trimin1|158138|e_gw1.5.323.1 ID=Trimin1|158138|e_gw1.5.323.1|Name=jgi.p|Trimin1|158138|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp
MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEA
NRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDS
HREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAAAQ
KEDAVVEEEEVAPEDEGVEESKTDE*
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mRNA from alignment at Contig_5:1019792..1020319-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2365 ID=mRNA_2365|Name=jgi.p|Trimin1|158138|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_5:1019792..1020319- (Tribonema minus UTEX_B_3156 )
ATGAACTCGCGCAAGCCCGTCCCACACCACCTCACCGACTCGTCACAGCG
TTACTGTGTGATGACAGTCGTCGCGCCGTCCGGCACGAATCAGAAAGCAA
AGGAGCTTTTGATTCGTGTTCATGGCTGCCGCGAATCGTTGGCTGAAGCC
AACAGGTGGGCGAAGAGCCTTCGCAATGAAAACAATTTCTTTGATGTGTA
CACACTCAAGACGAATGAGTGGGCACCTCTGCCGCCCCGCATCGATGAGA
TCGACAATGTCAACTTCACGGATGGCAGAGTTCAGGCTGTGTTCGATTCA
CACCGCGAGCACCAGAAGGGTGAGAAAAAAGAGATGATGCAGCGCCTCGC
ACAAGCGCACGAAGAGAAGACGCAGCGCGCGGCGCTCAAAGCGAGCGAGG
AGTTCGGAAAGATCGCTGAAGAAGTCGCACAGGAGGACGCTGCTGCGCAG
AAGGAGGACGCTGTCGTGGAGGAGGAGGAAGTCGCCCCTGAGGATGAGGG
TGTGGAGGAGAGCAAGACCGACGAGTGA
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Coding sequence (CDS) from alignment at Contig_5:1019792..1020319-

>mRNA_2365 ID=mRNA_2365|Name=jgi.p|Trimin1|158138|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_5:1019792..1020319- (Tribonema minus UTEX_B_3156 )
ATGAACTCGCGCAAGCCCGTCCCACACCACCTCACCGACTCGTCACAGCG
TTACTGTGTGATGACAGTCGTCGCGCCGTCCGGCACGAATCAGAAAGCAA
AGGAGCTTTTGATTCGTGTTCATGGCTGCCGCGAATCGTTGGCTGAAGCC
AACAGGTGGGCGAAGAGCCTTCGCAATGAAAACAATTTCTTTGATGTGTA
CACACTCAAGACGAATGAGTGGGCACCTCTGCCGCCCCGCATCGATGAGA
TCGACAATGTCAACTTCACGGATGGCAGAGTTCAGGCTGTGTTCGATTCA
CACCGCGAGCACCAGAAGGGTGAGAAAAAAGAGATGATGCAGCGCCTCGC
ACAAGCGCACGAAGAGAAGACGCAGCGCGCGGCGCTCAAAGCGAGCGAGG
AGTTCGGAAAGATCGCTGAAGAAGTCGCACAGGAGGACGCTGCTGCGCAG
AAGGAGGACGCTGTCGTGGAGGAGGAGGAAGTCGCCCCTGAGGATGAGGG
TGTGGAGGAGAGCAAGACCGACGAGTGA
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