mRNA_2353 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA) HSP 1 Score: 260 bits (664), Expect = 5.530e-88 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA
Sbjct: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.250e-68 Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 1
Query: 7 RLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
RLMG DM+IIAEV ARNEWWQATPAR EVQQ LL A PA SW +H+G DD A ERSVRE DVRDDLALALDGSIEM++PAGFADVVTATEVI+VK+ RNWKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 125
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.800e-58 Identity = 94/127 (74.02%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
VCRLMG DM+IIAEV AR++WWQ T AR EVQQALL PA WDE SGT D + RE DVRDDLALAL GSIE+ETPAGFADV+TAT VI+VK WRNWKH+LGQVLAYHAF SDK RIHLFA
Sbjct: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSD-----TTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.700e-54 Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
VCRLM DMKIIAEV RN WWQATPAR EVQ+ LL + P + + + +DD RER DVRD+LALAL G+IE++ AGFADVVTATEVI++K WR WKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRER-----DVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 106 bits (264), Expect = 6.370e-27 Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
+CR+MG D+ ++ E+E N W++ +QQAL+ + + + + SV+E VRD LA + G E+ETPAG DV++ TEVI+VK ++ WKH LGQVLAYH F +KR+HLFA
Sbjct: 1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQH---------VEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFA 118
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.890e-21 Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
+CR+MG D+ + ++E W +QQALL + +D ER VRE VRD LA + G+ E+ETP+G+ DV++ TEVI+VK +RNWK LGQVL Y + S+R+HLFA
Sbjct: 667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPV--------KNIEDCVTER-VRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFA 784
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.740e-20 Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 7 RLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
R+MG D+K++ +E N W + +Q+AL+ + +H T+ R VRE VRD LAL + G E ETP GF DV++ TEVI+VK + WKH LGQVL+Y KR+HLFA
Sbjct: 4 RVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPI------DH--TEKYVSGR-VREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.110e-19 Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
+CR+MG D+ + ++E W +QQALL + + ++ ER VRE VRD LA + G+ E+ETP+G+ DV++ TEVI+VK +R WK LGQVLAY + ++R+HLFA
Sbjct: 233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYK--------ENCVTER-VRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFA 350
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 5.670e-14 Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 175 VREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
V+E VRD LA + G E ETP GF DV++ TEVI+VK ++ W+ +LGQVLAY A+ +KR+HLFA
Sbjct: 204 VKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFA 272
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: UPI001683CC24 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683CC24) HSP 1 Score: 73.2 bits (178), Expect = 2.140e-13 Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 130 WDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLF 378
W+ T + E ++ LA L+G IE+ETP G DV+T+TE+I+VKA RNWK +LGQV+ Y + KRIHL+
Sbjct: 97 WENIYITKKYCKRAKKSEKSIQSTLAKELNGKIEIETPCGKIDVLTSTELIEVKAIRNWKEALGQVIVYGDYYPSHQKRIHLY 179 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2353 ID=mRNA_2353|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_5:988196..988576- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTGCCGGCTGATGGGTAGGGACATGAAGATCATTGCGGAGGTGGAGGCback to top protein sequence of jgi.p|Trimin1|153653 >Trimin1|153653|gw1.5.308.1 ID=Trimin1|153653|gw1.5.308.1|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTback to top mRNA from alignment at Contig_5:988196..988576- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_5:988196..988576- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_5:988196..988576- >mRNA_2353 ID=mRNA_2353|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_5:988196..988576- (Tribonema minus UTEX_B_3156 )back to top |