mRNA_2353 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153653
Unique NamemRNA_2353
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA)

HSP 1 Score: 260 bits (664), Expect = 5.530e-88
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA
Sbjct:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.250e-68
Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 1
Query:    7 RLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            RLMG DM+IIAEV ARNEWWQATPAR EVQQ LL A PA SW +H+G DD A ERSVRE DVRDDLALALDGSIEM++PAGFADVVTATEVI+VK+ RNWKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 125          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.800e-58
Identity = 94/127 (74.02%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            VCRLMG DM+IIAEV AR++WWQ T AR EVQQALL   PA  WDE SGT D     + RE DVRDDLALAL GSIE+ETPAGFADV+TAT VI+VK WRNWKH+LGQVLAYHAF SDK  RIHLFA
Sbjct:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSD-----TTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.700e-54
Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            VCRLM  DMKIIAEV  RN WWQATPAR EVQ+ LL + P  +  + + +DD  RER     DVRD+LALAL G+IE++  AGFADVVTATEVI++K WR WKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRER-----DVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.370e-27
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            +CR+MG D+ ++ E+E  N  W++      +QQAL+  +  +          + +  SV+E  VRD LA  + G  E+ETPAG  DV++ TEVI+VK ++ WKH LGQVLAYH F    +KR+HLFA
Sbjct:    1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQH---------VEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFA 118          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.890e-21
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            +CR+MG D+ +  ++E     W        +QQALL  +           +D   ER VRE  VRD LA  + G+ E+ETP+G+ DV++ TEVI+VK +RNWK  LGQVL Y +     S+R+HLFA
Sbjct:  667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPV--------KNIEDCVTER-VRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFA 784          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.740e-20
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    7 RLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            R+MG D+K++  +E  N  W +      +Q+AL+  +      +H  T+     R VRE  VRD LAL + G  E ETP GF DV++ TEVI+VK +  WKH LGQVL+Y        KR+HLFA
Sbjct:    4 RVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPI------DH--TEKYVSGR-VREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-19
Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            +CR+MG D+ +  ++E     W        +QQALL  +  +        ++   ER VRE  VRD LA  + G+ E+ETP+G+ DV++ TEVI+VK +R WK  LGQVLAY +     ++R+HLFA
Sbjct:  233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYK--------ENCVTER-VRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFA 350          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.670e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  175 VREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 381
            V+E  VRD LA  + G  E ETP GF DV++ TEVI+VK ++ W+ +LGQVLAY A+    +KR+HLFA
Sbjct:  204 VKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFA 272          
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Match: UPI001683CC24 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683CC24)

HSP 1 Score: 73.2 bits (178), Expect = 2.140e-13
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  130 WDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLF 378
            W+    T    +     E  ++  LA  L+G IE+ETP G  DV+T+TE+I+VKA RNWK +LGQV+ Y  +     KRIHL+
Sbjct:   97 WENIYITKKYCKRAKKSEKSIQSTLAKELNGKIEIETPCGKIDVLTSTELIEVKAIRNWKEALGQVIVYGDYYPSHQKRIHLY 179          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153653 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835YUG7_9STRA5.530e-88100.00FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YW01_9STRA1.250e-6883.20FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z393_9STRA1.800e-5874.02FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YNY8_9STRA4.700e-5468.50FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
D7G319_ECTSI6.370e-2742.52FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5N7_9PHAE1.890e-2141.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP52_ECTSI1.740e-2042.40FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJP2_9PHAE1.110e-1940.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L807_9PHAE5.670e-1453.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001683CC242.140e-1343.37hypothetical protein n=1 Tax=Anabaena sphaerica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:988196..988576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153653|gw1.5.308.1
Max annot lvl1117|Cyanobacteria
EggNOG OGs2EUDG@1|root,30HRK@2|Bacteria,1GI2U@1117|Cyanobacteria,1H6T7@1142|Synechocystis
Evalue3.41e-11
Seed ortholog1148.1001480
Hectar predicted targeting categoryother localisation
TranscriptId153975
TrackFilteredModels1
ProteinId153653
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153653gene_2353Tribonema minus UTEX_B_3156 geneContig_5 988196..988576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2353_1exon_2353_1Tribonema minus UTEX_B_3156 exonContig_5 988196..988576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2353CDS_2353Tribonema minus UTEX_B_3156 CDSContig_5 988196..988576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153653Trimin1|153653|gw1.5.308.1Tribonema minus UTEX_B_3156 polypeptideContig_5 988196..988576 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_5:988196..988576- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCCGGCTGATGGGTAGGGACATGAAGATCATTGCGGAGGTGGAGGC
GCGCAACGAATGGTGGCAGGCGACGCCTGCACGCAGTGAGGTCCAGCAGG
CGCTTCTGGGGGCACTACCTGCCCGCAGCTGGGACGAGCACAGCGGCACT
GACGACATCGCTCGTGAGCGCAGCGTGCGTGAGCACGACGTGCGCGATGA
CCTGGCGCTGGCGCTGGATGGCAGCATCGAGATGGAGACGCCAGCAGGCT
TTGCGGACGTCGTCACCGCCACCGAGGTCATCAAAGTGAAGGCTTGGCGA
AACTGGAAGCACTCGCTCGGGCAGGTGCTGGCCTACCATGCATTCATGAG
CGACAAGAGCAAGCGCATCCACCTCTTCGCC
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protein sequence of jgi.p|Trimin1|153653

>Trimin1|153653|gw1.5.308.1 ID=Trimin1|153653|gw1.5.308.1|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGT
DDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWR
NWKHSLGQVLAYHAFMSDKSKRIHLFA
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mRNA from alignment at Contig_5:988196..988576-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_5:988196..988576- (Tribonema minus UTEX_B_3156 )
GTGTGCCGGCTGATGGGTAGGGACATGAAGATCATTGCGGAGGTGGAGGC GCGCAACGAATGGTGGCAGGCGACGCCTGCACGCAGTGAGGTCCAGCAGG CGCTTCTGGGGGCACTACCTGCCCGCAGCTGGGACGAGCACAGCGGCACT GACGACATCGCTCGTGAGCGCAGCGTGCGTGAGCACGACGTGCGCGATGA CCTGGCGCTGGCGCTGGATGGCAGCATCGAGATGGAGACGCCAGCAGGCT TTGCGGACGTCGTCACCGCCACCGAGGTCATCAAAGTGAAGGCTTGGCGA AACTGGAAGCACTCGCTCGGGCAGGTGCTGGCCTACCATGCATTCATGAG CGACAAGAGCAAGCGCATCCACCTCTTCGCC
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Coding sequence (CDS) from alignment at Contig_5:988196..988576-

>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Trimin1|153653|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_5:988196..988576- (Tribonema minus UTEX_B_3156 )
GTGTGCCGGCTGATGGGTAGGGACATGAAGATCATTGCGGAGGTGGAGGC
GCGCAACGAATGGTGGCAGGCGACGCCTGCACGCAGTGAGGTCCAGCAGG
CGCTTCTGGGGGCACTACCTGCCCGCAGCTGGGACGAGCACAGCGGCACT
GACGACATCGCTCGTGAGCGCAGCGTGCGTGAGCACGACGTGCGCGATGA
CCTGGCGCTGGCGCTGGATGGCAGCATCGAGATGGAGACGCCAGCAGGCT
TTGCGGACGTCGTCACCGCCACCGAGGTCATCAAAGTGAAGGCTTGGCGA
AACTGGAAGCACTCGCTCGGGCAGGTGCTGGCCTACCATGCATTCATGAG
CGACAAGAGCAAGCGCATCCACCTCTTCGCC
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