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Homology
BLAST of jgi.p|Trimin1|346786 vs. uniprot
Match: A0A836CC82_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC82_9STRA) HSP 1 Score: 579 bits (1492), Expect = 1.010e-202 Identity = 456/459 (99.35%), Postives = 456/459 (99.35%), Query Frame = 1
Query: 1 MARKKAKTAVRKGAKKPGANAAPAXXXXXXXXXXXXXXXXXXXGRLEGFVLREVLTCLGPYEWVFLAPVCKLWRASFLEQHGTHAHATNVSGALASASRLRYAHERCGLAFTDAGVEGGDXXXXXXXXXXSIPAIRIAKACDLRVLAEAQSVLGAPIPWVPDPNNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILASLQRAVAAGEYGAAWLEAECAXXXXXXXXXXXXPSRRARAASRATFAWLLRHAWRDVFPGGGRXXXXXXXXXXXXXXXXXXXXXXVADGLMWLCVRRGRGDLARLLLARGTAWPGGAAVAQGAADLDDCAEHGAQPQLPPVDAMDWALLXXXXXXXXXXXXXXXXXXVKHGLPWGAWDCRALSGHINCPEHGRDAAEMFLWGHASGCPCNCEQGAPXXXXXXXXXXXXXXXXXXXXXXXGGEDGSDEE 1377
MARKKAKTAVRKGAKKPGANAAPAXXXXXXXXXXXXXXXXXXXGRLEGFVLREVLTCLGPYEWVFLAPVCKLWRASFLEQHGTHAHATNVSGALASASRLRYAHERCGLAFTDAGVEGGDXXXXXXXXXXSIPAIRIAKACDLRVLAEAQSVLGAPIPWVPDPNNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILASLQRAVAAGEYGAAWLEAECAXXXXXXXXXXXXPSRRARAASRATFAWLLRHAWRDVFPGGGRXXXXXXXXXXXXXXXXXXXXXXVADGLMWLCVRRGRGDLARLLLARGTAWPGGAAVAQGAADLDDCAEHGAQPQLPPVDAMDWALLXXXXXXXXXXXXXXXXXXVKHGLPWGAWDCRALSGHINCPEHGRDAAEMFLWGHASGCPCNCEQ XXXXXXXXXXXXXXXXXXXXXXXGGEDGSDEE
Sbjct: 1 MARKKAKTAVRKGAKKPGANAAPAXXXXXXXXXXXXXXXXXXXGRLEGFVLREVLTCLGPYEWVFLAPVCKLWRASFLEQHGTHAHATNVSGALASASRLRYAHERCGLAFTDAGVEGGDXXXXXXXXXXSIPAIRIAKACDLRVLAEAQSVLGAPIPWVPDPNNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILASLQRAVAAGEYGAAWLEAECAXXXXXXXXXXXXPSRRARAASRATFAWLLRHAWRDVFPGGGRXXXXXXXXXXXXXXXXXXXXXXVADGLMWLCVRRGRGDLARLLLARGTAWPGGAAVAQGAADLDDCAEHGAQPQLPPVDAMDWALLXXXXXXXXXXXXXXXXXXVKHGLPWGAWDCRALSGHINCPEHGRDAAEMFLWGHASGCPCNCEQXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDGSDEE 459
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|346786|estExt_Genemark1.C_Ctg_50071 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 347108 |
| Track | FilteredModels1 |
| ProteinId | 346786 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2323 ID=mRNA_2323|Name=jgi.p|Trimin1|346786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1476bp|location=Sequence derived from alignment at Contig_5:770535..773412- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCCCGCAAGAAGGCGAAAACAGCCGTCCGCAAAGGCGCCAAGAAGCC
CGGCGCAAACGCGGCCCCTGCTGCCGCAGCTGCAGCGGCTGCCGCCGCCG
CCGCGCAGCCAGCGCCCCCCCCCCCGCCTGGGCGCCTGGAGGGCTTCGTG
CTGCGCGAGGTCCTGACGTGCCTGGGCCCCTACGAGTGGGTCTTCCTCGC
CCCCGTCTGCAAGCTCTGGCGCGCGAGCTTCCTGGAGCAGCACGGCACGC
ACGCGCACGCGACCAACGTCAGCGGCGCCCTCGCCTCCGCGTCGCGCCTA
CGCTACGCACACGAGCGCTGCGGCCTCGCGTTCACCGACGCCGGCGTGGA
GGGCGGCGACGGCGGCAGCGGCGGCGACGGCGGCGGCGGCAGTATTCCCG
CCATCCGCATCGCCAAGGCCTGCGACTTGCGCGTCCTGGCGGAAGCGCAG
TCAGTGCTCGGCGCCCCTATCCCGTGGGTGCCGGATCCCAACAACCCCGC
AGCCGCCGCGGCGGACGACGCTGGCGATAACAGTGACAACGACGAAGACG
AGGATGGCAACGGCGGCGACGCCCCCGTGCAGGAGGGCGACGATGAGGCC
GCGGTGGCCCCCCCCGAGCCCCCCATACTCGCGTCGCTGCAGCGCGCCGT
CGCCGCCGGCGAGTACGGCGCGGCGTGGCTCGAGGCGGAGTGCGCGGCGG
CGGCCGCGCGCGGCGGCGGCGGCGGCGGCGGCCCGTCGCGCCGCGCGCGC
GCCGCCAGCCGCGCCACCTTCGCCTGGCTCCTGCGGCACGCGTGGCGCGA
CGTGTTTCCCGGCGGGGGGCGCGGCGGCGGCGACAATGACGATGATGGTG
GTGAGCAGGAGGGGGAGGAGGAGGGCGAGGGGAGCGGCGTCGCGGACGGG
CTCATGTGGCTGTGCGTGCGGCGCGGGCGCGGGGACCTGGCGCGGCTGCT
GCTGGCGCGCGGCACGGCGTGGCCGGGCGGCGCCGCCGTCGCGCAGGGCG
CCGCGGACCTGGACGACTGCGCGGAGCACGGCGCACAGCCGCAGCTGCCG
CCGGTCGACGCCATGGACTGGGCGCTCCTGCCGGTGAACGCCGTGGACTG
GGCGCTGCTGCCAGTCGACGCCGTGGACTGGGCGGTGAAGCATGGCCTGC
CGTGGGGCGCGTGGGACTGCCGCGCGCTGTCGGGCCATATCAACTGCCCG
GAGCACGGGCGCGACGCCGCGGAGATGTTCCTCTGGGGGCACGCCAGCGG
GTGCCCGTGCAACTGCGAGCAGGGCGCGCCCGCCGCCGCCGCCGCCGGCG
ACAGCGAAGACGAAGAAGAGGAGGAGGACGAAGACGAAGGCGACGGCTCG
GGAGGCGAAGATGGCTCGGACGAGGAGTAGGCGCGGAGGCCGCCGAAGGG
GGGGCGGGCGCTGCTGCTGCTGCTGCTGCTGATGCGCAGCAGCTGGCCAA
CTGCCGGGCGAGCGCGCGTGCGGGGG back to topprotein sequence of jgi.p|Trimin1|346786 >Trimin1|346786|estExt_Genemark1.C_Ctg_50071 ID=Trimin1|346786|estExt_Genemark1.C_Ctg_50071|Name=jgi.p|Trimin1|346786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=460bp
MARKKAKTAVRKGAKKPGANAAPAAAAAAAAAAAAQPAPPPPPGRLEGFV
LREVLTCLGPYEWVFLAPVCKLWRASFLEQHGTHAHATNVSGALASASRL
RYAHERCGLAFTDAGVEGGDGGSGGDGGGGSIPAIRIAKACDLRVLAEAQ
SVLGAPIPWVPDPNNPAAAAADDAGDNSDNDEDEDGNGGDAPVQEGDDEA
AVAPPEPPILASLQRAVAAGEYGAAWLEAECAAAAARGGGGGGGPSRRAR
AASRATFAWLLRHAWRDVFPGGGRGGGDNDDDGGEQEGEEEGEGSGVADG
LMWLCVRRGRGDLARLLLARGTAWPGGAAVAQGAADLDDCAEHGAQPQLP
PVDAMDWALLPVNAVDWALLPVDAVDWAVKHGLPWGAWDCRALSGHINCP
EHGRDAAEMFLWGHASGCPCNCEQGAPAAAAAGDSEDEEEEEDEDEGDGS
GGEDGSDEE* back to topmRNA from alignment at Contig_5:770535..773412- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2323 ID=mRNA_2323|Name=jgi.p|Trimin1|346786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2878bp|location=Sequence derived from alignment at Contig_5:770535..773412- (Tribonema minus UTEX_B_3156 )
ATGGCCCGCAAGAAGGCGAAAACAGCCGTCCGCAAAGGCGCCAAGAAGCC
CGGCGCAAACGCGGCCCCTGCTGCCGCAGCTGCAGCGGCTGCCGCCGCCG
CCGCGCAGCCAGCGCCCCCCCCCCCGCCTGGGCGCCTGGAGGGCTTCGTG
CTGCGCGAGGTCCTGACGTGCCTGGGCCCCTACGAGTGGGTCTTCCTCGC
CCCCGTCTGCAAGCTCTGGCGCGCGAGCTTCCTGGAGCAGCACGGCACGC
ACGCGCACGCGACCAACGTCAGCGGCGCCCTCGCCTCCGCGTCGCGCCTA
CGCTACGCACACGAGCGCTGCGGCCTCGCGTTCACCGACGCCGGCGTGGA
GGGCGGCGACGGCGGCAGCGGCGGCGACGGCGGCGGCGGCAGTATTCCCG
CCATCCGCATCGCCAAGGCCTGCGACTTGCGCGTCCTGGCGGAAGCGCAG
TCAGTGCTCGGCGCCCCTATCCCGTGGGTGCCGGATCCCAACAACCCCGC
AGCCGCCGCGGCGGACGACGCTGGCGATAACAGTGACAACGACGAAGACG
AGGATGGCAACGGCGGCGACGCCCCCGTGCAGGAGGGCGACGATGAGGCC
GCGGTGGCCCCCCCCGAGCCCCCCATACTCGCGTCGCTGCAGCGCGCCGT
CGCCGCCGGCGAGTACGGCGCGGCGTGGCTCGAGGCGGAGTGCGCGGCGG
CGGCCGCGCGCGGCGGCGGCGGCGGCGGCGGCCCGTCGCGCCGCGCGCGC
GCCGCCAGCCGCGCCACCTTCGCCTGGCTCCTGCGGCACGCGTGGCGCGA
CGTGTTTCCCGGCGGGGGGCGCGGCGGCGGCGACAATGACGATGATGGTG
GTGAGCAGGAGGGGGAGGAGGAGGGCGAGGGGAGCGGCGTCGCGGACGGG
CTCATGTGGCTGTGCGTGCGGCGCGGGCGCGGGGACCTGGCGCGGCTGCT
GCTGGCGCGCGGCACGGCGTGGCCGGGCGGCGCCGCCGTCGCGCAGGGCG
CCGCGGACCTGGACGACTGCGCGGAGCACGGCGCACAGCCGCAGGTGCGA
CTCCAGTATACCTATGCGCTTGCTCGCTCGTTCATTCGTTGGCGCGCTTG
CTCGAAGCGCCGGCGGGCAGGGTCGAGTGCACTCGAACGCATCCTGGGGT
GCGGAAAAGCGCTCCAGCGATCACGAGTCACCTTCGTCGTCGTCGTCTCA
AGCTGTAATGTCCTCCAGCCTTTGCTTCCCGTGAGCATGTACATTTCCAC
AATGTGGACCTGTGTACAAGGCTGGTACGCGCGCACGAGCGCGCCGCCGC
TGCAGCCGCGGCGCGCAGCTGCCGGCGCCACTCAATGTGCATATTCACTT
GCTCGCTCGCTCGTTCATGCGATTACCCGACACGGTGGCGGGCAAGGCAG
AGTGGACTCGAACGGATTCTGGGGGTGCGAAATGCATTGATCGAGTCTAC
TTCGAGATGTGAAATCGTAATCCTACTAATCCTACGGTATTTGCTACTTG
TGAACGAGTGCGTGTCTCGCGACATGAGCCTGTGTAATGTATTTACTTCT
ACTTCTGCTTGAAGGCGGAAACCTACGTGTACAAGGCTGGTACGTGCACA
CAAGTTTCCCGCTGCCGCCGCTGCAGCACGGCTGATCCTGTTGAGTGGTC
AGTGTGCACATCGTTGTGTCGCTGACGCCACGTCCCGAATCGGTGCGCTT
GTGAGCAGTTGCAGCAGCGGAATGCGCACGTGAAGTTCGCCTTTGCAGCC
TCGCAAACCGATGGTTTTAGTGTCATCCCCCCCCCCCCCCCCCCCCACAC
ACACACACACACACGCCATGCATGCGCGTACGCAGCTGCCGCCGGTCGAC
GCCATGGACTGGGCGGTGAAGCACGGCCTGCAGACTCACATCGGCAAACT
GCTGGCACAATAACTCCCCGCGGATAAAAATACACTTTTTATACTGTCAC
ACGGCGAGTTCCCCCCCCCCCCCCCTGACGCATTCCCCTCCCCCCCCCCC
TGCTTGCCTGCAGCTCCTGCCGGTGAACGCCGTGGACTGGGCGGTGAAGC
ACGGCCTGCAGACTCACATCGGCGAACTGCTGGCACAGTTGCAACTCCCC
GCCGGAAAAAAATATGCTTTTATATTGTAATACGGCGAAAACCCCCTGCC
CCCCCCCTGACGAATTCCCCCCCCCCCCCCCCCCCTGTTCGCCTGCAGCT
GCTGCCAGTCGACGCCGTGGACTGGGCGGTGAAGCATGGCCTGCCGTGGG
GCGCGTGGGACTGCCGCGCGCTGTCGGGCCATATCAACTGCCCGGAGCAC
GGGCGCGACGCCGCGGAGGTGTGTGCAACTTCAACTTCCTGATAATAGTA
TTGCATACTAATGAAAACGAATCAAAAGATCGTTGAGCTCTGGTTGACAA
GGGATGGTCAGCCGCAAGTGCCTTCCACCAATAACCGTGGTCACCGCTGC
TGCAGCAATAGTATGCATGCCATGATGCCACACAGTGTCATATGCCATGC
GTGCCATGCATGCCATGTGACGCCGCGGAGGTGTGTAACTTCAACTTCCT
ACCCCGAACCCTGACCCTAACCGCTTGTGACCCAGATGCTCCTGTGGATG
GATTGCTTGACCTGCTCGTGACCCAGATGTTCCTCTGGGGGCACGCCAGC
GGGTGCCCGTGCAACTGCGAGCAGGGCGCGCCCGCCGCCGCCGCCGCCGG
CGACAGCGAAGACGAAGAAGAGGAGGAGGACGAAGACGAAGGCGACGGCT
CGGGAGGCGAAGATGGCTCGGACGAGGAGTAGGCGCGGAGGCCGCCGAAG
GGGGGGCGGGCGCTGCTGCTGCTGCTGCTGCTGATGCGCAGCAGCTGGCC
AACTGCCGGGCGAGCGCGCGTGCGGGGG back to topCoding sequence (CDS) from alignment at Contig_5:770535..773412- >mRNA_2323 ID=mRNA_2323|Name=jgi.p|Trimin1|346786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1380bp|location=Sequence derived from alignment at Contig_5:770535..773412- (Tribonema minus UTEX_B_3156 )
ATGGCCCGCAAGAAGGCGAAAACAGCCGTCCGCAAAGGCGCCAAGAAGCC
CGGCGCAAACGCGGCCCCTGCTGCCGCAGCTGCAGCGGCTGCCGCCGCCG
CCGCGCAGCCAGCGCCCCCCCCCCCGCCTGGGCGCCTGGAGGGCTTCGTG
CTGCGCGAGGTCCTGACGTGCCTGGGCCCCTACGAGTGGGTCTTCCTCGC
CCCCGTCTGCAAGCTCTGGCGCGCGAGCTTCCTGGAGCAGCACGGCACGC
ACGCGCACGCGACCAACGTCAGCGGCGCCCTCGCCTCCGCGTCGCGCCTA
CGCTACGCACACGAGCGCTGCGGCCTCGCGTTCACCGACGCCGGCGTGGA
GGGCGGCGACGGCGGCAGCGGCGGCGACGGCGGCGGCGGCAGTATTCCCG
CCATCCGCATCGCCAAGGCCTGCGACTTGCGCGTCCTGGCGGAAGCGCAG
TCAGTGCTCGGCGCCCCTATCCCGTGGGTGCCGGATCCCAACAACCCCGC
AGCCGCCGCGGCGGACGACGCTGGCGATAACAGTGACAACGACGAAGACG
AGGATGGCAACGGCGGCGACGCCCCCGTGCAGGAGGGCGACGATGAGGCC
GCGGTGGCCCCCCCCGAGCCCCCCATACTCGCGTCGCTGCAGCGCGCCGT
CGCCGCCGGCGAGTACGGCGCGGCGTGGCTCGAGGCGGAGTGCGCGGCGG
CGGCCGCGCGCGGCGGCGGCGGCGGCGGCGGCCCGTCGCGCCGCGCGCGC
GCCGCCAGCCGCGCCACCTTCGCCTGGCTCCTGCGGCACGCGTGGCGCGA
CGTGTTTCCCGGCGGGGGGCGCGGCGGCGGCGACAATGACGATGATGGTG
GTGAGCAGGAGGGGGAGGAGGAGGGCGAGGGGAGCGGCGTCGCGGACGGG
CTCATGTGGCTGTGCGTGCGGCGCGGGCGCGGGGACCTGGCGCGGCTGCT
GCTGGCGCGCGGCACGGCGTGGCCGGGCGGCGCCGCCGTCGCGCAGGGCG
CCGCGGACCTGGACGACTGCGCGGAGCACGGCGCACAGCCGCAGCTGCCG
CCGGTCGACGCCATGGACTGGGCGCTCCTGCCGGTGAACGCCGTGGACTG
GGCGCTGCTGCCAGTCGACGCCGTGGACTGGGCGGTGAAGCATGGCCTGC
CGTGGGGCGCGTGGGACTGCCGCGCGCTGTCGGGCCATATCAACTGCCCG
GAGCACGGGCGCGACGCCGCGGAGATGTTCCTCTGGGGGCACGCCAGCGG
GTGCCCGTGCAACTGCGAGCAGGGCGCGCCCGCCGCCGCCGCCGCCGGCG
ACAGCGAAGACGAAGAAGAGGAGGAGGACGAAGACGAAGGCGACGGCTCG
GGAGGCGAAGATGGCTCGGACGAGGAGTAG back to top
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