mRNA_229 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152243
Unique NamemRNA_229
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A836CE24_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE24_9STRA)

HSP 1 Score: 214 bits (545), Expect = 3.750e-70
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query:    1 RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVXXXXXXXXXXXXXXXXXXXSKNIFDRNVGDPD 351
            RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVXXXXXXXXXXXXXXXXXXXSKNIFDRNVGDPD
Sbjct:    1 RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVXXXXXXXXXXXXXXXXXXXSKNIFDRNVGDPD 117          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7MES1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MES1_TETTS)

HSP 1 Score: 102 bits (255), Expect = 3.420e-24
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHS 252
            C  QCP G+RDDG   C KPSAYGRG G+PW+FGD  F  D A  RCEK N  GCE+ GLI YPKC+ GFH+
Sbjct:  118 CASQCPPGFRDDGFF-CAKPSAYGRGAGYPWQFGDA-FNLDNATKRCEKDNSQGCEQNGLIIYPKCQQGFHN 187          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A835Z7X4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.770e-23
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    4 CKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFP-WKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
            C  G+ G+L RC   CP G++DDG++ C+KP++YGRG G+  W+           E  C+K NP GCE+ G ++YPKC++G+H+V
Sbjct:   11 CDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWR-----------EGACKKDNPQGCEKNGALWYPKCKAGYHNV 84          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: Q22N72_TETTS (Transmembrane protein, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22N72_TETTS)

HSP 1 Score: 100 bits (249), Expect = 3.330e-23
Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 RCKAGYDG-KLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
            +CK GY       C Q CPSG+RDDG+  C KP AYGRG G+PWKFGD  F  + A SRC   +PSGCE+ G I YPKC   FHSV
Sbjct:  111 KCKQGYHPFGCCICAQDCPSGFRDDGLY-CAKPEAYGRGVGYPWKFGDG-FNLNNANSRCLHDHPSGCEQSGAIIYPKCAQNFHSV 194          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7MEW1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MEW1_TETTS)

HSP 1 Score: 99.0 bits (245), Expect = 9.880e-23
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
            C  QCP G+RDDG+  C KP +YGRG G+PW+FGD     + A +RC++ NP GCE+ GLI YPKC  GFHSV
Sbjct:  121 CESQCPPGFRDDGLF-CAKPDSYGRGAGYPWEFGDD-LNLNDAYNRCQRDNPQGCEQNGLIIYPKCAQGFHSV 191          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: Q237R9_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q237R9_TETTS)

HSP 1 Score: 98.2 bits (243), Expect = 1.970e-22
Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHS 252
            C  QCP G+RDDG+  C KP AYGRG G+PWKFGD     + A  RCE  N  GCE+ GLI YPKCR GFHS
Sbjct:  121 CESQCPPGFRDDGLF-CAKPEAYGRGVGYPWKFGDD-LNLNNALKRCESENSQGCEQNGLIIYPKCRQGFHS 190          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A3P1C216_9BACT (Uncharacterized protein n=1 Tax=Larkinella rosea TaxID=2025312 RepID=A0A3P1C216_9BACT)

HSP 1 Score: 100 bits (248), Expect = 2.040e-22
Identity = 45/99 (45.45%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 RCKAGYDGKLNRCYQQCPSGYRDDG--------------ITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
            +C  G +     CY +C +GY   G                 C KP+AYGRG G+PWKFGDTPF  D A +RC+K NP GCE+ G I YPKC+ GF+ V
Sbjct:  146 QCGPGQEYDAGLCYPKCQTGYAGVGPXXXXXXXXXXXXXXAFCAKPAAYGRGAGYPWKFGDTPFSLDGARARCQKDNPQGCEKSGEIIYPKCKPGFYPV 244          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7LT73_TETTS (Uncharacterized protein n=4 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LT73_TETTS)

HSP 1 Score: 97.8 bits (242), Expect = 3.050e-22
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 RCKAG-YDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
            +C+ G Y+     C   CP G+RDDG+  C KP AYGRG G+PWKFGD+    + A  RC+  N  GCE+ GL+ YPKC+ GFH+V
Sbjct:  108 KCEEGFYNVGCCLCESSCPPGFRDDGLF-CAKPEAYGRGAGYPWKFGDS-LNLNDASKRCQSENSQGCEQNGLVIYPKCKQGFHNV 191          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A1V5DB92_9DELT (Uncharacterized protein n=1 Tax=Syntrophus sp. PtaU1.Bin005 TaxID=1811712 RepID=A0A1V5DB92_9DELT)

HSP 1 Score: 97.8 bits (242), Expect = 1.080e-21
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSG-CERQGLIYYPKCRSGFHSV 255
            C+Q+CP G+RDDG   C KP +YGRG GFPWKFGD  F    A+ RCEK +  G CE+ G IYYPKC+ G+ ++
Sbjct:  102 CWQRCPPGFRDDGAY-CFKPKSYGRGVGFPWKFGDPAFNLSNAKKRCEKKHGQGQCEKYGAIYYPKCKPGYRAI 174          
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7M1S4_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M1S4_TETTS)

HSP 1 Score: 95.1 bits (235), Expect = 2.880e-21
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHS 252
            C  QCP G+RDDG+  C KPSAYGRG G+PWKFGD  F  + A  RC+  N  GCE  GLI YPKC  G+H+
Sbjct:  119 CESQCPPGFRDDGLF-CAKPSAYGRGAGYPWKFGDG-FNLNGATQRCQHDNSQGCESYGLIIYPKCSQGYHN 188          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE24_9STRA3.750e-70100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
I7MES1_TETTS3.420e-2462.50Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]
A0A835Z7X4_9STRA2.770e-2343.53Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
Q22N72_TETTS3.330e-2356.98Transmembrane protein, putative n=1 Tax=Tetrahymen... [more]
I7MEW1_TETTS9.880e-2357.53Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]
Q237R9_TETTS1.970e-2261.11Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]
A0A3P1C216_9BACT2.040e-2245.45Uncharacterized protein n=1 Tax=Larkinella rosea T... [more]
I7LT73_TETTS3.050e-2250.00Uncharacterized protein n=4 Tax=Tetrahymena thermo... [more]
A0A1V5DB92_9DELT1.080e-2155.41Uncharacterized protein n=1 Tax=Syntrophus sp. Pta... [more]
I7M1S4_TETTS2.880e-2158.33Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:785034..785384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152243|gw1.3.447.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DTY2@1|root,2S6IW@2759|Eukaryota
Evalue5.6e-25
Seed ortholog5911.EAR97486
Hectar predicted targeting categoryother localisation
TranscriptId152565
TrackFilteredModels1
ProteinId152243
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152243gene_229Tribonema minus UTEX_B_3156 geneContig_3 785034..785384 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_229_1exon_229_1Tribonema minus UTEX_B_3156 exonContig_3 785034..785384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_229CDS_229Tribonema minus UTEX_B_3156 CDSContig_3 785034..785384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152243Trimin1|152243|gw1.3.447.1Tribonema minus UTEX_B_3156 polypeptideContig_3 785034..785384 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_229 ID=mRNA_229|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:785034..785384- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGTGTAAAGCAGGTTACGACGGGAAGCTCAACCGATGCTACCAGCAATG
TCCGAGCGGTTACCGGGACGACGGCATCACCAGTTGCCTGAAACCGAGCG
CGTACGGCCGTGGTGGAGGATTTCCGTGGAAGTTCGGAGATACCCCATTT
CGCTACGACAAGGCCGAATCGCGCTGCGAAAAGGCAAACCCGTCAGGTTG
CGAACGTCAGGGCCTCATCTACTACCCAAAGTGCCGCTCCGGGTTCCATT
CCGTGGGCCTGGTGTGCAGCCCCGACTGTCCCGCCGGAATGCGCGACTTC
GGCATTGGCTGCTCTAAAAACATCTTCGACCGAAATGTGGGTGACCCGGA
T
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protein sequence of jgi.p|Trimin1|152243

>Trimin1|152243|gw1.3.447.1 ID=Trimin1|152243|gw1.3.447.1|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPF
RYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVGLVCSPDCPAGMRDF
GIGCSKNIFDRNVGDPD
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mRNA from alignment at Contig_3:785034..785384-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_229 ID=mRNA_229|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:785034..785384- (Tribonema minus UTEX_B_3156 )
AGGTGTAAAGCAGGTTACGACGGGAAGCTCAACCGATGCTACCAGCAATG TCCGAGCGGTTACCGGGACGACGGCATCACCAGTTGCCTGAAACCGAGCG CGTACGGCCGTGGTGGAGGATTTCCGTGGAAGTTCGGAGATACCCCATTT CGCTACGACAAGGCCGAATCGCGCTGCGAAAAGGCAAACCCGTCAGGTTG CGAACGTCAGGGCCTCATCTACTACCCAAAGTGCCGCTCCGGGTTCCATT CCGTGGGCCTGGTGTGCAGCCCCGACTGTCCCGCCGGAATGCGCGACTTC GGCATTGGCTGCTCTAAAAACATCTTCGACCGAAATGTGGGTGACCCGGA T
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Coding sequence (CDS) from alignment at Contig_3:785034..785384-

>mRNA_229 ID=mRNA_229|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_3:785034..785384- (Tribonema minus UTEX_B_3156 )
AGGTGTAAAGCAGGTTACGACGGGAAGCTCAACCGATGCTACCAGCAATG
TCCGAGCGGTTACCGGGACGACGGCATCACCAGTTGCCTGAAACCGAGCG
CGTACGGCCGTGGTGGAGGATTTCCGTGGAAGTTCGGAGATACCCCATTT
CGCTACGACAAGGCCGAATCGCGCTGCGAAAAGGCAAACCCGTCAGGTTG
CGAACGTCAGGGCCTCATCTACTACCCAAAGTGCCGCTCCGGGTTCCATT
CCGTGGGCCTGGTGTGCAGCCCCGACTGTCCCGCCGGAATGCGCGACTTC
GGCATTGGCTGCTCTAAAAACATCTTCGACCGAAATGTGGGTGACCCGGA
T
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