mRNA_229 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A836CE24_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE24_9STRA) HSP 1 Score: 214 bits (545), Expect = 3.750e-70 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query: 1 RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVXXXXXXXXXXXXXXXXXXXSKNIFDRNVGDPD 351
RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVXXXXXXXXXXXXXXXXXXXSKNIFDRNVGDPD
Sbjct: 1 RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSVXXXXXXXXXXXXXXXXXXXSKNIFDRNVGDPD 117
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7MES1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MES1_TETTS) HSP 1 Score: 102 bits (255), Expect = 3.420e-24 Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHS 252
C QCP G+RDDG C KPSAYGRG G+PW+FGD F D A RCEK N GCE+ GLI YPKC+ GFH+
Sbjct: 118 CASQCPPGFRDDGFF-CAKPSAYGRGAGYPWQFGDA-FNLDNATKRCEKDNSQGCEQNGLIIYPKCQQGFHN 187
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A835Z7X4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X4_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.770e-23 Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 4 CKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFP-WKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
C G+ G+L RC CP G++DDG++ C+KP++YGRG G+ W+ E C+K NP GCE+ G ++YPKC++G+H+V
Sbjct: 11 CDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWR-----------EGACKKDNPQGCEKNGALWYPKCKAGYHNV 84
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: Q22N72_TETTS (Transmembrane protein, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22N72_TETTS) HSP 1 Score: 100 bits (249), Expect = 3.330e-23 Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 RCKAGYDG-KLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
+CK GY C Q CPSG+RDDG+ C KP AYGRG G+PWKFGD F + A SRC +PSGCE+ G I YPKC FHSV
Sbjct: 111 KCKQGYHPFGCCICAQDCPSGFRDDGLY-CAKPEAYGRGVGYPWKFGDG-FNLNNANSRCLHDHPSGCEQSGAIIYPKCAQNFHSV 194
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7MEW1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MEW1_TETTS) HSP 1 Score: 99.0 bits (245), Expect = 9.880e-23 Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
C QCP G+RDDG+ C KP +YGRG G+PW+FGD + A +RC++ NP GCE+ GLI YPKC GFHSV
Sbjct: 121 CESQCPPGFRDDGLF-CAKPDSYGRGAGYPWEFGDD-LNLNDAYNRCQRDNPQGCEQNGLIIYPKCAQGFHSV 191
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: Q237R9_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q237R9_TETTS) HSP 1 Score: 98.2 bits (243), Expect = 1.970e-22 Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHS 252
C QCP G+RDDG+ C KP AYGRG G+PWKFGD + A RCE N GCE+ GLI YPKCR GFHS
Sbjct: 121 CESQCPPGFRDDGLF-CAKPEAYGRGVGYPWKFGDD-LNLNNALKRCESENSQGCEQNGLIIYPKCRQGFHS 190
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A3P1C216_9BACT (Uncharacterized protein n=1 Tax=Larkinella rosea TaxID=2025312 RepID=A0A3P1C216_9BACT) HSP 1 Score: 100 bits (248), Expect = 2.040e-22 Identity = 45/99 (45.45%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 1 RCKAGYDGKLNRCYQQCPSGYRDDG--------------ITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
+C G + CY +C +GY G C KP+AYGRG G+PWKFGDTPF D A +RC+K NP GCE+ G I YPKC+ GF+ V
Sbjct: 146 QCGPGQEYDAGLCYPKCQTGYAGVGPXXXXXXXXXXXXXXAFCAKPAAYGRGAGYPWKFGDTPFSLDGARARCQKDNPQGCEKSGEIIYPKCKPGFYPV 244
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7LT73_TETTS (Uncharacterized protein n=4 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LT73_TETTS) HSP 1 Score: 97.8 bits (242), Expect = 3.050e-22 Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 RCKAG-YDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHSV 255
+C+ G Y+ C CP G+RDDG+ C KP AYGRG G+PWKFGD+ + A RC+ N GCE+ GL+ YPKC+ GFH+V
Sbjct: 108 KCEEGFYNVGCCLCESSCPPGFRDDGLF-CAKPEAYGRGAGYPWKFGDS-LNLNDASKRCQSENSQGCEQNGLVIYPKCKQGFHNV 191
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: A0A1V5DB92_9DELT (Uncharacterized protein n=1 Tax=Syntrophus sp. PtaU1.Bin005 TaxID=1811712 RepID=A0A1V5DB92_9DELT) HSP 1 Score: 97.8 bits (242), Expect = 1.080e-21 Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSG-CERQGLIYYPKCRSGFHSV 255
C+Q+CP G+RDDG C KP +YGRG GFPWKFGD F A+ RCEK + G CE+ G IYYPKC+ G+ ++
Sbjct: 102 CWQRCPPGFRDDGAY-CFKPKSYGRGVGFPWKFGDPAFNLSNAKKRCEKKHGQGQCEKYGAIYYPKCKPGYRAI 174
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Match: I7M1S4_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M1S4_TETTS) HSP 1 Score: 95.1 bits (235), Expect = 2.880e-21 Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 37 CYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFRYDKAESRCEKANPSGCERQGLIYYPKCRSGFHS 252
C QCP G+RDDG+ C KPSAYGRG G+PWKFGD F + A RC+ N GCE GLI YPKC G+H+
Sbjct: 119 CESQCPPGFRDDGLF-CAKPSAYGRGAGYPWKFGDG-FNLNGATQRCQHDNSQGCESYGLIIYPKCSQGYHN 188 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152243 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_229 ID=mRNA_229|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:785034..785384- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGGTGTAAAGCAGGTTACGACGGGAAGCTCAACCGATGCTACCAGCAATGback to top protein sequence of jgi.p|Trimin1|152243 >Trimin1|152243|gw1.3.447.1 ID=Trimin1|152243|gw1.3.447.1|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp RCKAGYDGKLNRCYQQCPSGYRDDGITSCLKPSAYGRGGGFPWKFGDTPFback to top mRNA from alignment at Contig_3:785034..785384- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_229 ID=mRNA_229|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_3:785034..785384- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:785034..785384- >mRNA_229 ID=mRNA_229|Name=jgi.p|Trimin1|152243|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_3:785034..785384- (Tribonema minus UTEX_B_3156 )back to top |