mRNA_2281 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|72109
Unique NamemRNA_2281
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|72109 vs. uniprot
Match: A0A835YS82_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS82_9STRA)

HSP 1 Score: 319 bits (818), Expect = 9.790e-109
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 3 
Query:  135 MQLCSVVGSSMTCIQLLAGGFDDTATTAVGLLLGQFELLFLTVQLCFSVGLIAFLATILTRVWVLYCAESERSLANAITALLGCVSLLMIRILTRPIAGANVGRSLLRYARLVWRDVLFQPAAAVGLCFVALAVRYSDTRKVREDRGFKYGFKGLFHRSKAPEPEE 632
            MQLCSVVGSSMTCIQLLAGGFDDTATTAVGLLLGQFELLFLTVQLCFSVGLIAFLATILTRVWVLYCAESERSLANAITALLGCVSLLMIRILTRPIAGANVGRSLLRYARLVWRDVLFQPAAAVGLCFVALAVRYSDTRKVREDRGFKYGFKGLFHRSKAPEPEE
Sbjct:    1 MQLCSVVGSSMTCIQLLAGGFDDTATTAVGLLLGQFELLFLTVQLCFSVGLIAFLATILTRVWVLYCAESERSLANAITALLGCVSLLMIRILTRPIAGANVGRSLLRYARLVWRDVLFQPAAAVGLCFVALAVRYSDTRKVREDRGFKYGFKGLFHRSKAPEPEE 166
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|72109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS82_9STRA9.790e-109100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:334036..337692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|72109|CE72108_30
Hectar predicted targeting categorysignal anchor
TranscriptId72431
TrackFilteredModels1
ProteinId72109
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|72109gene_2281Tribonema minus UTEX_B_3156 geneContig_5 334036..337692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|72109Trimin1|72109|CE72108_30Tribonema minus UTEX_B_3156 polypeptideContig_5 334157..337558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2281_3exon_2281_3Tribonema minus UTEX_B_3156 exonContig_5 334036..334234 -
exon_2281_2exon_2281_2Tribonema minus UTEX_B_3156 exonContig_5 335424..335787 -
exon_2281_1exon_2281_1Tribonema minus UTEX_B_3156 exonContig_5 337500..337692 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2281UTR3_2281Tribonema minus UTEX_B_3156 three_prime_UTRContig_5 334036..334156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2281CDS_2281Tribonema minus UTEX_B_3156 CDSContig_5 337500..337558 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2281UTR5_2281Tribonema minus UTEX_B_3156 five_prime_UTRContig_5 337559..337692 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2281 ID=mRNA_2281|Name=jgi.p|Trimin1|72109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_5:334036..337692- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCAAGTCCTGACGCCGTCCGCGTTCCTGGCGGGAGCGTCGCTGACGGCG
ATAACTTCAATAGAGGGCGACGACTTGCCGCGCACGCGCACGGTCAAATC
CATCAACATCCTGTGCGCGTACCTAAGCTTTGGGATGCAGCTGTGCTCGG
TGGTGGGGAGCAGCATGACGTGCATACAGCTGCTGGCGGGAGGATTCGAC
GACACGGCGACCACCGCCGTCGGCCTCCTCCTGGGCCAGTTTGAGCTGCT
CTTCCTCACCGTCCAGCTGTGCTTCTCGGTGGGCCTCATCGCGTTCCTGG
CGACGATCCTCACGCGCGTCTGGGTCCTCTACTGCGCCGAGTCGGAGCGC
TCGCTGGCCAACGCCATCACGGCGCTCCTCGGCTGCGTCTCGCTACTCAT
GATCCGCATCCTCACGCGCCCGATCGCGGGCGCGAACGTCGGCCGCAGCC
TGCTGCGCTACGCGCGCCTCGTGTGGCGCGACGTGCTCTTCCAGCCCGCC
GCCGCCGTCGGGCTGTGCTTCGTCGCGCTCGCCGTGCGCTACTCCGACAC
GCGCAAGGTCCGGGAAGACAGGGGATTCAAGTACGGCTTCAAGGGCCTCT
TTCACCGCTCGAAAGCACCGGAACCAGAAGAGTGAAGCCCTCCACCGCCA
TCTACTTCAAGTCCCACTTCAACATACAGTTGGATCATATGGGTCAGCGG
CTCAGTCAGCAGCTGCAGAAGGGATTTGAATAGGGGCATCTCCCCATATC
ATGGGG
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protein sequence of jgi.p|Trimin1|72109

>Trimin1|72109|CE72108_30 ID=Trimin1|72109|CE72108_30|Name=jgi.p|Trimin1|72109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=167bp
MQLCSVVGSSMTCIQLLAGGFDDTATTAVGLLLGQFELLFLTVQLCFSVG
LIAFLATILTRVWVLYCAESERSLANAITALLGCVSLLMIRILTRPIAGA
NVGRSLLRYARLVWRDVLFQPAAAVGLCFVALAVRYSDTRKVREDRGFKY
GFKGLFHRSKAPEPEE*
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mRNA from alignment at Contig_5:334036..337692-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2281 ID=mRNA_2281|Name=jgi.p|Trimin1|72109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3657bp|location=Sequence derived from alignment at Contig_5:334036..337692- (Tribonema minus UTEX_B_3156 )
GCCAAGTCCTGACGCCGTCCGCGTTCCTGGCGGGAGCGTCGCTGACGGCG
ATAACTTCAATAGAGGGCGACGACTTGCCGCGCACGCGCACGGTCAAATC
CATCAACATCCTGTGCGCGTACCTAAGCTTTGGGATGCAGCTGTGCTCGG
TGGTGGGGAGCAGCATGACGTGCATACAGCTGCTGGCGGGAGGGTGAGTG
AGTGCGCAGCCGCGTACCGCAAAGAACTAGAGTGGACTAGCAGCTAGGGC
TATATCTAACCTAGTTGATGAACCGCGCAATCTCTACACAAAAAGGCAGC
GCACACACAATGCAGGGACGGCTGCCGCGTTGTGCGCAGAGAGGCCAGGT
TGCAATCATCAGGGAATTGAACCGAGTTTTCTTCAAAAAGATGTTCATTA
CACATCATGAATTGTCTTGAAAGCATGTGACTGAGGTACAACCTAACACA
GTTACAACGCTGACCTGTCATGCCATGCCCATGGGTAGGATCAGATTCAG
GCTTAGGGCTAGGGTGCTTGACCGGTCCTTGCCTAAACACTCCAGGTGTC
GCGATTGTGTAGAGGTTATATGGTTCTCCTGTGTCAGGGACTGTATATTG
CCCAGTGCATGTATTTGCAGCACATCACTGCCGTTGTTGTCATGTGTAGG
GTTAGGCACAGGTGATATGACACTTGATTATCTTGCGAATTGAGGCTGCA
ATTTGTCTTGACCAATTTCTGTATTCAAACCAGAGGCTTTCGGCAATTGC
AAAATTGTTAACCGCACCTATGAGGCCCATCGGCAGTGCTATGAAAATTC
TATGGATGTGAAGTTCAGATCCACAACAGGCAAAAACAGCAATTACAATT
GTAATTTACGAGGCTTGCGACACGAACTTTCTTGTGCTACCCGCATCTCA
TGGTTGGGGCTAGGGGTAGGTACCTCTATCCCTAATCTAACCCTTCTTTA
CAAAAAGTATGTCCCAGCCGCAGATGGCGTTATCTCACTCAGACTCTGTA
GCAGTGCGATTCAGCTCGACGGAGAGGGTTAGGCTTAGGCTGAGGCTGTG
GCGGAGGCTGCGCGCACCGCATGGAGACACGCATCGTTAACGTCTCAGTG
CGCGCCAAGTATAGCACCATAGCGGTTCACGCGCATGTGCATTGTCATAC
AGCCGGCTCCCTACCCAGGAGAGAGATGGAGGCACTTCTAAAAATTCTAG
CCCTACCCCTAAGTTCGCACTGCAGTGCTTACTCAGCTTGACCTGTGTTT
CATGTTCAACTTCCCGTTCTGCCAGTTGCTTGTAGTGTCGTGCTTACCTC
AGAGTGCACGGCGGCATGTGTAAACCGCTGGCGTTTGAAGCCTGCAGCAG
ACAAGCCGAAGATGCAGAAAAAAATCAGAGTATAGCTCCTGCATGACAGA
GCTCAGAACAAGCATGCAGTAGTACATTGGTAGTGCTTTTAATTGTGCAG
ATGATTGGACGCTGGCAGGCCGGCAAGGCTGCAAGCGTCCGCGAATCTGC
CTTGTGTTACGACATACCTGATAATGCCTGATAACGCTCAGCGCGCAGTG
ATGTTTTAGGCCTCGAACATACTGTACCCCCTGCTTTCGAACACATCACA
GCGAAGTAGCTAGTTACAAGCAAGGGAGAAACTTGCACATTTTCTTCCAC
ACGGGCGCCCCCCAGGCCTTCAACCCCCCCCCCCCCCCCCCCGCCAACAC
ACACACACACCCCAGATTTGACGACACTGCGACCACCGCAGTCGGCCTTT
GAGCTGCTCTTCCGGACAAGTTTACACTTCGATTGACTACAATCACATGT
AGAGTGCTGCCAGGGAAAAGTTTCACATTTTCTTCACGCAGGCGCCTCAG
GCATCCCCCCCCTCCCCTCACCCCTCCCCCCCCCTTCCCCCCCCCCCACC
CCCAGATTCGACGACACGGCGACCACCGCCGTCGGCCTCCTCCTGGGCCA
GTTTGAGCTGCTCTTCCTCACCGTCCAGCTGTGCTTCTCGGTGGGCCTCA
TCGCGTTCCTGGCGACGATCCTCACGCGCGTCTGGGTCCTCTACTGCGCC
GAGTCGGAGCGCTCGCTGGCCAACGCCATCACGGCGCTCCTCGGCTGCGT
CTCGCTACTCATGATCCGCATCCTCACGCGCCCGATCGCGGGCGCGAACG
TCGGCCGCAGCCTGCTGCGCTACGCGCGCCTCGTGTGGCGCGACGTGCTC
TTCCAGCCCGCCGCCGCCGTCGGGCTGTGCTTCGTCGCGCTCGCCGTGCG
CTACTCCGACACGCGCAAGGTGAGCACGCATCCTTTTTTTATGACCCGTA
TGCAGCCCCTGTTGGAGCCATCAGAGTTGCAACCGTAGCGGTGTCGCGCT
CGCCATGCGCTACTTCGACACGCGCAAGGTGAGCGCCTTACTTTTTTTCA
TGGCTCCTACACGGCCCCTGTTCGTGCCGTCGGACTTGTAACTCAAGCTT
CAAGCGCAGTGGTCCGCACTTGCGTTGCGCGCGTCTGACGGCTTGCAAGC
GTACATAGTGCTTGTCGCGCTCGCCGTGCACTACTCCGACACGCGCAAGG
TGAGTCTCTTGTACCCGCCACAGTTCCCCCTGCTGATGCCGCCAGGCTTG
TAAGCTTAGTGTCACCCTTGTCGTGCCCCCTACATAGCCCCTGTGGCGTA
AGGCTTGTAACTGTAGCAGTGTCGCGCTCGCCGTGCGCTACTCCGACAGG
CGCAAGGCGAGCGCTCGGCTGCCTGTTGCACCCCCCTTACAGCACAGCCC
CTATTAGCACCGTCAAGCTTGCGAGTGGTTTCGCCCACTGCTGCGCGTGT
CTGACGGATTGCAAGCGTAGTGGCTCGCCCTGCCTGTGCGCGTGTCTGAT
GGCATGCGACTGCAGCGGTGTCGCGCTCGCCGTGCGCCGCTCTGACTCGT
GCGTGGCGAGCCCCTGCCCGTCTGTCATACCCCCTGCATAGCCCCCTGCT
GATACGATCGGGCTCGCAAGCGTAGTGGTTTGCGGCCGCGTGCGCGCCCG
TCGGACACGGCTGCGCTGCATGAACTGTGTGGTGCGACACCCCCGTTCCA
GCGCGCCGCTGCTGATCATCACCATCATCATCACCATCGTCATCCGCTAC
TCAAGACACGCATGATGTGGTGCTTTCAGCCTTGTCCCACAATCAAATTT
TGGCCAGTTGGCTGAGCGCTGCCCCTTGGCAGGTCCAATGCGGCCGACTG
CCCGGCGGACAATGCGTGGTGCGTCGTCCTCTCCCAGCGCGCCGCCACCG
TTAGCCCGCTATGCGTCGCCATGATTGCGCGGTAGTTGCACACGCGTGAG
ATGAGCATCCTCACCCTCCGACATTTCGTCTTAGTTGACCATAGTAGTGT
TGGCATGGTTAAGCATTGTATACCTCCAGACATAACAGTGTTTTATGTCA
GGATGCTTACGCGTCACTTGTGACTCAAATGCTGAGCGCTGCCTTTGGTG
CTGTGCAGGTCCGGGAAGACAGGGGATTCAAGTACGGCTTCAAGGGCCTC
TTTCACCGCTCGAAAGCACCGGAACCAGAAGAGTGAAGCCCTCCACCGCC
ATCTACTTCAAGTCCCACTTCAACATACAGTTGGATCATATGGGTCAGCG
GCTCAGTCAGCAGCTGCAGAAGGGATTTGAATAGGGGCATCTCCCCATAT
CATGGGG
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Coding sequence (CDS) from alignment at Contig_5:334036..337692-

>mRNA_2281 ID=mRNA_2281|Name=jgi.p|Trimin1|72109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=501bp|location=Sequence derived from alignment at Contig_5:334036..337692- (Tribonema minus UTEX_B_3156 )
ATGCAGCTGTGCTCGGTGGTGGGGAGCAGCATGACGTGCATACAGCTGCT
GGCGGGAGGATTCGACGACACGGCGACCACCGCCGTCGGCCTCCTCCTGG
GCCAGTTTGAGCTGCTCTTCCTCACCGTCCAGCTGTGCTTCTCGGTGGGC
CTCATCGCGTTCCTGGCGACGATCCTCACGCGCGTCTGGGTCCTCTACTG
CGCCGAGTCGGAGCGCTCGCTGGCCAACGCCATCACGGCGCTCCTCGGCT
GCGTCTCGCTACTCATGATCCGCATCCTCACGCGCCCGATCGCGGGCGCG
AACGTCGGCCGCAGCCTGCTGCGCTACGCGCGCCTCGTGTGGCGCGACGT
GCTCTTCCAGCCCGCCGCCGCCGTCGGGCTGTGCTTCGTCGCGCTCGCCG
TGCGCTACTCCGACACGCGCAAGGTCCGGGAAGACAGGGGATTCAAGTAC
GGCTTCAAGGGCCTCTTTCACCGCTCGAAAGCACCGGAACCAGAAGAGTG
A
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