mRNA_228 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157464
Unique NamemRNA_228
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157464 vs. uniprot
Match: A0A836CEU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU2_9STRA)

HSP 1 Score: 228 bits (582), Expect = 3.100e-69
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1 
Query:    1 MPSSTAAGKECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSNRHCVCGGAYPIFGFEEDERATCCAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQCLGDICGVKLGGSAQKYGGVQRRPIYRSPGGPLAVMSTERKV 1008
            MPSSTAAGKECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSNRHCVCGGAYPIFGFEEDERATCCAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQCLGDICGVKLGGSAQKYGGVQRRPIYRSPGGPLAVMSTERKV
Sbjct:    1 MPSSTAAGKECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSNRHCVCGGAYPIFGFEEDERATCCAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQCLGDICGVKLGGSAQKYGGVQRRPIYRSPGGPLAVMSTERKV 336
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BLAST of jgi.p|Trimin1|157464 vs. uniprot
Match: A0A835Z4C5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.150e-18
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   19 AGKECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSN 204
            A KECAF GC  +APRKWC EHK H++C+ P+CT    YNL  AG QWCKAH+G+ MVDV N
Sbjct:   74 ASKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVN 135
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BLAST of jgi.p|Trimin1|157464 vs. uniprot
Match: A0A836CPB0_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPB0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.980e-12
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   25 KECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSNRHC 213
            K C    C + A RKWC EHK+  ECK+  C K+P+YN+P AGAQ+CK H  +GM D+ ++ C
Sbjct:    7 KACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 69
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157464 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CEU2_9STRA3.100e-69100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4C5_9STRA7.150e-1862.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPB0_9STRA8.980e-1249.21EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:783444..784454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157464|e_gw1.3.429.1
Hectar predicted targeting categoryother localisation
TranscriptId157786
TrackFilteredModels1
ProteinId157464
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157464gene_228Tribonema minus UTEX_B_3156 geneContig_3 783444..784454 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_228_1exon_228_1Tribonema minus UTEX_B_3156 exonContig_3 783444..784454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_228CDS_228Tribonema minus UTEX_B_3156 CDSContig_3 783444..784454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157464Trimin1|157464|e_gw1.3.429.1Tribonema minus UTEX_B_3156 polypeptideContig_3 783444..784454 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_228 ID=mRNA_228|Name=jgi.p|Trimin1|157464|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_3:783444..784454- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGAGCACCGCTGCGGGCAAGGAGTGCGCCTTCCTCGGGTGCCC
CCGCAATGCCCCCCGCAAGTGGTGCCCTGAGCACAAACAGCACAGAGAAT
GCAAGGAGCCGTCGTGTACGAAGCAGCCAACTTACAACCTGCCCGATGCG
GGAGCGCAGTGGTGCAAGGCTCACAAAGGACAGGGTATGGTGGACGTCAG
CAACAGGCACTGCGTCTGCGGCGGGGCTTACCCGATCTTCGGGTTCGAGG
AGGACGAACGGGCCACGTGCTGTGCGCAATGCAAGCACGACGACATGATG
GACATCGTCAACAGGCGTTGCATCTGCGGCCGGGCACAACCGCACTTCGG
GTTCGCGGAGGACGAACGGCCCACGTGCTGTGCGCAATGCAAGCACGACG
ACATGATCAATGTCGTCAACAGGCGTTGCGTCTGCGGCCGGGCGGGTCCG
AGCTTCGGGTTCGAGGAGGACGAACGGGCCACGTGCTGTGCGCAATGCAA
GCACGACGACATGATGGACATCAAGCACAGGCGTTGCGTCTGCGGCCGGG
CGCGCCCGAGCTTCGGGTTCGAGGAGGACGAACGGCCCACGTGCTGTGCG
CAATGCAAGCACGACCACATGACGGACATCAAGCGCAGGCGTTGCGTCTG
CGGCCGGGCACAGCCGGGCTTCGGGTTCGATGGAGACAAACAGCCCACGC
GCTGTGCGCAATGCAAGCAAGGCAACATGATCGACATCATCAGCAGGCGT
TGCGTCTGCGGCCGGGCACGTCCGAGCTTCGGGTTCGAGGAGGACGAGAG
GCCCACATGCTGTGCGCAATGCAAGCGGGGCGACATGATCAATGTCGTCA
CGACGCGTTGTGAGCATGGTCGGTCCGGTCAGTGCCTCGGAGACATTTGC
GGCGTCAAGCTCGGGGGCAGCGCACAGAAATACGGAGGTGTGCAACGGAG
ACCGATATATCGGTCTCCGGGTGGTCCTTTGGCAGTGATGAGCACAGAAC
GAAAGGTTTAA
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protein sequence of jgi.p|Trimin1|157464

>Trimin1|157464|e_gw1.3.429.1 ID=Trimin1|157464|e_gw1.3.429.1|Name=jgi.p|Trimin1|157464|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp
MPSSTAAGKECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDA
GAQWCKAHKGQGMVDVSNRHCVCGGAYPIFGFEEDERATCCAQCKHDDMM
DIVNRRCICGRAQPHFGFAEDERPTCCAQCKHDDMINVVNRRCVCGRAGP
SFGFEEDERATCCAQCKHDDMMDIKHRRCVCGRARPSFGFEEDERPTCCA
QCKHDHMTDIKRRRCVCGRAQPGFGFDGDKQPTRCAQCKQGNMIDIISRR
CVCGRARPSFGFEEDERPTCCAQCKRGDMINVVTTRCEHGRSGQCLGDIC
GVKLGGSAQKYGGVQRRPIYRSPGGPLAVMSTERKV*
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mRNA from alignment at Contig_3:783444..784454-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_228 ID=mRNA_228|Name=jgi.p|Trimin1|157464|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_3:783444..784454- (Tribonema minus UTEX_B_3156 )
ATGCCGTCGAGCACCGCTGCGGGCAAGGAGTGCGCCTTCCTCGGGTGCCC
CCGCAATGCCCCCCGCAAGTGGTGCCCTGAGCACAAACAGCACAGAGAAT
GCAAGGAGCCGTCGTGTACGAAGCAGCCAACTTACAACCTGCCCGATGCG
GGAGCGCAGTGGTGCAAGGCTCACAAAGGACAGGGTATGGTGGACGTCAG
CAACAGGCACTGCGTCTGCGGCGGGGCTTACCCGATCTTCGGGTTCGAGG
AGGACGAACGGGCCACGTGCTGTGCGCAATGCAAGCACGACGACATGATG
GACATCGTCAACAGGCGTTGCATCTGCGGCCGGGCACAACCGCACTTCGG
GTTCGCGGAGGACGAACGGCCCACGTGCTGTGCGCAATGCAAGCACGACG
ACATGATCAATGTCGTCAACAGGCGTTGCGTCTGCGGCCGGGCGGGTCCG
AGCTTCGGGTTCGAGGAGGACGAACGGGCCACGTGCTGTGCGCAATGCAA
GCACGACGACATGATGGACATCAAGCACAGGCGTTGCGTCTGCGGCCGGG
CGCGCCCGAGCTTCGGGTTCGAGGAGGACGAACGGCCCACGTGCTGTGCG
CAATGCAAGCACGACCACATGACGGACATCAAGCGCAGGCGTTGCGTCTG
CGGCCGGGCACAGCCGGGCTTCGGGTTCGATGGAGACAAACAGCCCACGC
GCTGTGCGCAATGCAAGCAAGGCAACATGATCGACATCATCAGCAGGCGT
TGCGTCTGCGGCCGGGCACGTCCGAGCTTCGGGTTCGAGGAGGACGAGAG
GCCCACATGCTGTGCGCAATGCAAGCGGGGCGACATGATCAATGTCGTCA
CGACGCGTTGTGAGCATGGTCGGTCCGGTCAGTGCCTCGGAGACATTTGC
GGCGTCAAGCTCGGGGGCAGCGCACAGAAATACGGAGGTGTGCAACGGAG
ACCGATATATCGGTCTCCGGGTGGTCCTTTGGCAGTGATGAGCACAGAAC
GAAAGGTTTAA
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Coding sequence (CDS) from alignment at Contig_3:783444..784454-

>mRNA_228 ID=mRNA_228|Name=jgi.p|Trimin1|157464|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_3:783444..784454- (Tribonema minus UTEX_B_3156 )
ATGCCGTCGAGCACCGCTGCGGGCAAGGAGTGCGCCTTCCTCGGGTGCCC
CCGCAATGCCCCCCGCAAGTGGTGCCCTGAGCACAAACAGCACAGAGAAT
GCAAGGAGCCGTCGTGTACGAAGCAGCCAACTTACAACCTGCCCGATGCG
GGAGCGCAGTGGTGCAAGGCTCACAAAGGACAGGGTATGGTGGACGTCAG
CAACAGGCACTGCGTCTGCGGCGGGGCTTACCCGATCTTCGGGTTCGAGG
AGGACGAACGGGCCACGTGCTGTGCGCAATGCAAGCACGACGACATGATG
GACATCGTCAACAGGCGTTGCATCTGCGGCCGGGCACAACCGCACTTCGG
GTTCGCGGAGGACGAACGGCCCACGTGCTGTGCGCAATGCAAGCACGACG
ACATGATCAATGTCGTCAACAGGCGTTGCGTCTGCGGCCGGGCGGGTCCG
AGCTTCGGGTTCGAGGAGGACGAACGGGCCACGTGCTGTGCGCAATGCAA
GCACGACGACATGATGGACATCAAGCACAGGCGTTGCGTCTGCGGCCGGG
CGCGCCCGAGCTTCGGGTTCGAGGAGGACGAACGGCCCACGTGCTGTGCG
CAATGCAAGCACGACCACATGACGGACATCAAGCGCAGGCGTTGCGTCTG
CGGCCGGGCACAGCCGGGCTTCGGGTTCGATGGAGACAAACAGCCCACGC
GCTGTGCGCAATGCAAGCAAGGCAACATGATCGACATCATCAGCAGGCGT
TGCGTCTGCGGCCGGGCACGTCCGAGCTTCGGGTTCGAGGAGGACGAGAG
GCCCACATGCTGTGCGCAATGCAAGCGGGGCGACATGATCAATGTCGTCA
CGACGCGTTGTGAGCATGGTCGGTCCGGTCAGTGCCTCGGAGACATTTGC
GGCGTCAAGCTCGGGGGCAGCGCACAGAAATACGGAGGTGTGCAACGGAG
ACCGATATATCGGTCTCCGGGTGGTCCTTTGGCAGTGATGAGCACAGAAC
GAAAGGTTTAA
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