mRNA_2262 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158270
Unique NamemRNA_2262
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A836CBK5_9STRA (ADP-ribosylation factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK5_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.530e-68
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 LQGLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYVYCLNLYVWKGMEIS 300
            LQGLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYVYCLNLYVWKGMEIS
Sbjct:    1 LQGLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYVYCLNLYVWKGMEIS 100
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A0L0BXW3_LUCCU (Uncharacterized protein n=2 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0BXW3_LUCCU)

HSP 1 Score: 99.4 bits (246), Expect = 3.840e-24
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRL 240
            GLDGAGKTT+L++++  G ++ T PTIGFN E VE   +S  +WD+GGQ TIRSLW HY  + + ++FVVDSSDV+R+
Sbjct:   24 GLDGAGKTTILFKLKL-GEVISTIPTIGFNVETVEYKNISFTVWDIGGQKTIRSLWYHYFPNTAAIIFVVDSSDVARV 100
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: UPI000E55CFB1 (ADP-ribosylation factor 4 n=1 Tax=Urocitellus parryii TaxID=9999 RepID=UPI000E55CFB1)

HSP 1 Score: 97.4 bits (241), Expect = 4.600e-24
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYV 258
            GLD AGKTT+LY+++  G IV T PTIGFN E VE   +   +WD+GGQ  IR LW HY ++  GL+FVVDS+D  R+ EG  V
Sbjct:   24 GLDAAGKTTILYKLKL-GEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAQV 106
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A0L1I9Z6_PLAFA (ADP-ribosylation factor n=1 Tax=Plasmodium falciparum IGH-CR14 TaxID=580059 RepID=A0A0L1I9Z6_PLAFA)

HSP 1 Score: 98.6 bits (244), Expect = 6.620e-24
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYVYCLNLYVWKGME 294
            GLD AGKTT+LY+V+  G +V T PTIGFN E VE   +S  +WD+GGQ  IR LW HY  +  GL+FVVDS+D  R+++G       +  WK ++
Sbjct:   24 GLDAAGKTTILYKVKL-GEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDGK-----KIKKWKDVK 113
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A6P6EGX7_OCTDE (ADP-ribosylation factor 4 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6EGX7_OCTDE)

HSP 1 Score: 97.1 bits (240), Expect = 6.700e-24
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYV 258
            GLD AGKTT+LY+++  G IV T PTIGFN E VE   +   +WD+GGQ  IR LW HY ++  GL+FVVDS+D  R+ EG  V
Sbjct:   24 GLDAAGKTTILYKLKL-GEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGATV 106
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A1I8MSA5_MUSDO (Uncharacterized protein n=3 Tax=Muscinae TaxID=43910 RepID=A0A1I8MSA5_MUSDO)

HSP 1 Score: 98.6 bits (244), Expect = 7.130e-24
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNE 246
            GLDGAGKTT+LY+++  G ++ T PTIGFN E VE   +   +WD+GGQ  IR+LW HY  + S ++FVVDSSDV R+++
Sbjct:   24 GLDGAGKTTILYKLKI-GEVISTIPTIGFNVETVEYKNICFTVWDIGGQKKIRNLWNHYYPNTSAVIFVVDSSDVQRMDD 102
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A024W847_PLAFA (Uncharacterized protein n=1 Tax=Plasmodium falciparum Tanzania (2000708) TaxID=1036725 RepID=A0A024W847_PLAFA)

HSP 1 Score: 98.2 bits (243), Expect = 8.250e-24
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEG 249
            GLD AGKTT+LY+V+  G +V T PTIGFN E VE   +S  +WD+GGQ  IR LW HY  +  GL+FVVDS+D  R+++G
Sbjct:   24 GLDAAGKTTILYKVKL-GEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDG 103
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A1A6GM97_NEOLE (Uncharacterized protein (Fragment) n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6GM97_NEOLE)

HSP 1 Score: 97.8 bits (242), Expect = 8.350e-24
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 LQGLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYV 258
            L GLD AGKTT+LY+++  G IV T PTIGFN E VE   +   +WD+GGQ  IR LW HY ++  GL+FVVDS+D  R+ EG  V
Sbjct:    9 LVGLDAAGKTTILYKLKL-GEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAV 93
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A0G4IL85_PLABS (ADP-ribosylation factor n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IL85_PLABS)

HSP 1 Score: 98.6 bits (244), Expect = 8.910e-24
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    7 GLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGM 252
            GLD AGKTT+LY+++  G +V T PTIGFN E VE   +S  +WD+GGQ  IR LW HY ++  G++FVVDS+D  RL+EG+
Sbjct:   24 GLDAAGKTTILYKLKL-GEVVTTIPTIGFNVETVEYKTISFTVWDVGGQDKIRPLWRHYYQNTQGIIFVVDSNDRERLDEGL 104
[Close]
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Match: A0A822H894_9NEOB (ADP-ribosylation factor n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822H894_9NEOB)

HSP 1 Score: 97.8 bits (242), Expect = 1.170e-23
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 LQGLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGGQATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYV 258
            L GLD AGKTT+LY+++  G IV T PTIGFN E VE   +   +WD+GGQ  IR LW HY ++  GL+FVVDS+D  R+ EG  V
Sbjct:   13 LVGLDAAGKTTILYKLKL-GEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAV 97
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158270 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBK5_9STRA1.530e-68100.00ADP-ribosylation factor (Fragment) n=1 Tax=Tribone... [more]
A0A0L0BXW3_LUCCU3.840e-2456.41Uncharacterized protein n=2 Tax=Lucilia cuprina Ta... [more]
UPI000E55CFB14.600e-2454.76ADP-ribosylation factor 4 n=1 Tax=Urocitellus parr... [more]
A0A0L1I9Z6_PLAFA6.620e-2448.96ADP-ribosylation factor n=1 Tax=Plasmodium falcipa... [more]
A0A6P6EGX7_OCTDE6.700e-2454.76ADP-ribosylation factor 4 n=1 Tax=Octodon degus Ta... [more]
A0A1I8MSA5_MUSDO7.130e-2453.75Uncharacterized protein n=3 Tax=Muscinae TaxID=439... [more]
A0A024W847_PLAFA8.250e-2455.56Uncharacterized protein n=1 Tax=Plasmodium falcipa... [more]
A0A1A6GM97_NEOLE8.350e-2454.65Uncharacterized protein (Fragment) n=1 Tax=Neotoma... [more]
A0A0G4IL85_PLABS8.910e-2454.88ADP-ribosylation factor n=1 Tax=Plasmodiophora bra... [more]
A0A822H894_9NEOB1.170e-2354.65ADP-ribosylation factor n=1 Tax=Ranitomeya imitato... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:116697..117638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158270|e_gw1.5.200.1
BRITEko00000,ko04031
KEGG koko:K07977
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363
DescriptionADP-ribosylation factor
COG categoryU
Max annot lvl35493|Streptophyta
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota,37QYU@33090|Viridiplantae,3GP1F@35493|Streptophyta,3HWAX@3699|Brassicales
Evalue2.46e-26
Seed ortholog3702.AT2G15310.1
Hectar predicted targeting categoryother localisation
TranscriptId158592
TrackFilteredModels1
ProteinId158270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158270gene_2262Tribonema minus UTEX_B_3156 geneContig_5 116697..117638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158270Trimin1|158270|e_gw1.5.200.1Tribonema minus UTEX_B_3156 polypeptideContig_5 116697..117638 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2262_2exon_2262_2Tribonema minus UTEX_B_3156 exonContig_5 116697..116894 -
exon_2262_1exon_2262_1Tribonema minus UTEX_B_3156 exonContig_5 117534..117638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2262CDS_2262Tribonema minus UTEX_B_3156 CDSContig_5 117534..117638 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2262 ID=mRNA_2262|Name=jgi.p|Trimin1|158270|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_5:116697..117638- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGGGCTTGGATGGCGCGGGCAAGACGACGCTGCTGTACAGGGTCCA
GACCAACGGCTCCATCGTGCCCACAAAACCCACGATTGGCTTCAATGCAG
AACAGGTGGAGATTGACGGCGTGAGCGTGGTGATGTGGGATTTGGGGGGG
CAGGCGACGATACGCAGTCTGTGGGGACACTATGTAAAGGACGCTAGCGG
GCTGGTGTTTGTGGTGGACTCCTCGGACGTGTCACGGTTAAATGAAGGTA
TGTATGTATATTGCTTGAATCTGTATGTTTGGAAAGGAATGGAAATATCG
TAG
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protein sequence of jgi.p|Trimin1|158270

>Trimin1|158270|e_gw1.5.200.1 ID=Trimin1|158270|e_gw1.5.200.1|Name=jgi.p|Trimin1|158270|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
LQGLDGAGKTTLLYRVQTNGSIVPTKPTIGFNAEQVEIDGVSVVMWDLGG
QATIRSLWGHYVKDASGLVFVVDSSDVSRLNEGMYVYCLNLYVWKGMEIS
*
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mRNA from alignment at Contig_5:116697..117638-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2262 ID=mRNA_2262|Name=jgi.p|Trimin1|158270|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_5:116697..117638- (Tribonema minus UTEX_B_3156 )
TTGCAGGGCTTGGATGGCGCGGGCAAGACGACGCTGCTGTACAGGGTCCA
GACCAACGGCTCCATCGTGCCCACAAAACCCACGATTGGCTTCAATGCAG
AACAGGTCGGCCACTTTTCGCATGGCTCGGGATTTGGAAACCCATCATCA
CTGCTATACTCGATCCATCATCTGATGTTCACAGCTGTGCACGCGCTGTC
AGGCTGCGTGACTGTCTGCTAGATTGGATATGAAATGTCTGCGCTTGCGT
CTGGAACAGCCAGAAATTCGCATCGACCCTGCACAACTTCGTGCTGTTGG
TGCAAAGGGTGGCCGGCACAGAGTTGCTGTCAGTGTACGGCTGGCAAGTG
TAACTCAATGGTCAGCAAAGTTGTTGAAATTGGTGAATGAATGAGTTGTT
GCATGGCGCTTAGACGTGATGCTGCAGAGAAGGCTCAGCAGTGTACCACC
TACATGCATGGCAGGCAGTGAAGGTCCGACCACGTTGTATCTCGCAAGGC
GTGGGGCTTCTGCACTGATGGCAAGACATTTTGCTGCGTAACGACGCCTT
GACATGACAACCAACGTCAATAATCTTGCACCCATTGCATCTCTTCAAGA
GCTGGACAGACGACGCGTTCATACCCTGTGCACAGATGCTACACCCATGA
ACTTCAAGTGCGGAGCTCTGCCCGCAAATTGGTCCTGCCCTTCTACTTCG
CTTCTGCTGCTGACGACGGTTACTCAATGCGTAACCGCCGGCAGGTGGAG
ATTGACGGCGTGAGCGTGGTGATGTGGGATTTGGGGGGGCAGGCGACGAT
ACGCAGTCTGTGGGGACACTATGTAAAGGACGCTAGCGGGCTGGTGTTTG
TGGTGGACTCCTCGGACGTGTCACGGTTAAATGAAGGTATGTATGTATAT
TGCTTGAATCTGTATGTTTGGAAAGGAATGGAAATATCGTAG
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Coding sequence (CDS) from alignment at Contig_5:116697..117638-

>mRNA_2262 ID=mRNA_2262|Name=jgi.p|Trimin1|158270|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_5:116697..117638- (Tribonema minus UTEX_B_3156 )
TTGCAGGGCTTGGATGGCGCGGGCAAGACGACGCTGCTGTACAGGGTCCA
GACCAACGGCTCCATCGTGCCCACAAAACCCACGATTGGCTTCAATGCAG
AACAGGTGGAGATTGACGGCGTGAGCGTGGTGATGTGGGATTTGGGGGGG
CAGGCGACGATACGCAGTCTGTGGGGACACTATGTAAAGGACGCTAGCGG
GCTGGTGTTTGTGGTGGACTCCTCGGACGTGTCACGGTTAAATGAAGGTA
TGTATGTATATTGCTTGAATCTGTATGTTTGGAAAGGAATGGAAATATCG
TAG
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