mRNA_2261 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158087
Unique NamemRNA_2261
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A836CC59_9STRA (Chloroplast 29 kDa ribonucleoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC59_9STRA)

HSP 1 Score: 357 bits (916), Expect = 2.880e-124
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1 
Query:    1 MSYGSEGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQRY 576
            MSYGSEGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQRY
Sbjct:    1 MSYGSEGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQRY 192
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A835Z0H8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0H8_9STRA)

HSP 1 Score: 263 bits (673), Expect = 8.300e-87
Identity = 149/222 (67.12%), Postives = 167/222 (75.23%), Query Frame = 1 
Query:    1 MSYGS-EGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASE-----------------------------GNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQRY 576
            MSYG+ EGCKLYVGNLGYDT +DTL  AF+ FG +QEASVA+DRETG SRGFGFVTY +P EAQAAMDNLN T+LDGRTIRVNLSQPR   +   XXXXXXXXXXX                                GNKLFIGNLGW+TTTD+L+ AF QYGQ+QDAIVMTDRETGSSRGFGFVTY  A +AQAAI+ +DG DFGGR+IRVNISEP+QR+
Sbjct:    1 MSYGAAEGCKLYVGNLGYDTRSDTLHAAFAPFGNIQEASVASDRETGQSRGFGFVTYSSPMEAQAAMDNLNGTELDGRTIRVNLSQPRYGGSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKLFIGNLGWSTTTDELYQAFSQYGQIQDAIVMTDRETGSSRGFGFVTYTDAGAAQAAIQGMDGRDFGGRSIRVNISEPKQRF 222
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A836CBQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ9_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.770e-64
Identity = 110/190 (57.89%), Postives = 144/190 (75.79%), Query Frame = 1 
Query:   16 EGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERA-----AGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQ 570
            +GCKLYVGNLGYDT  D L   F+++G + + +V TDR+TG+SRGFGF+TY +  EA AA DNL+  ++DGRTIRVN+S+PR         G XXXXXXXXXX  A + +KLF+GNLGW+TT++DL  AF QYG V DA V+TDRETG+SRGFGFVT+ + ++A+ AI  +DG +  GR IRVNIS+P++
Sbjct:  178 DGCKLYVGNLGYDTTADQLESRFAEYGTISDLTVVTDRDTGNSRGFGFITYSSAAEAAAAADNLDGAEVDGRTIRVNISRPRAERNTFSEGGGXXXXXXXXXXDSAVDSSKLFVGNLGWDTTSEDLQQAFAQYGDVVDAKVVTDRETGNSRGFGFVTFQSTEAAENAIGGMDGMELDGREIRVNISQPKK 367
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A8H8M5M6_9AGAM (RNA recognition motif protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M5M6_9AGAM)

HSP 1 Score: 165 bits (417), Expect = 4.870e-47
Identity = 104/208 (50.00%), Postives = 127/208 (61.06%), Query Frame = 1 
Query:   25 KLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPR---------------------------ERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPR 567
            K+YVGNL ++TN++TL QAFS+FG + ++ V  DRETG SRGFGFVTYGT QEA AA+ N+N+ +LDGR I+VN +  R                                XXXXXXXXXXXXX         GNL WNT  D L   F QYG V D+IVM DRETG SRGFGFVTYAT   A +AI+  + T+  GR I+VN++  R
Sbjct:    4 KIYVGNLSWNTNDETLRQAFSEFGQILDSIVMRDRETGRSRGFGFVTYGTEQEADAAIQNMNDQELDGRRIKVNGANQRGXXXXXXXXXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLSWNTNDDTLRQVFSQYGNVLDSIVMRDRETGRSRGFGFVTYATEGEAGSAIQKANNTELDGRQIKVNLANAR 211
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A8H8JW91_9AGAM (RNA recognition motif protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JW91_9AGAM)

HSP 1 Score: 159 bits (403), Expect = 6.420e-45
Identity = 100/211 (47.39%), Postives = 121/211 (57.35%), Query Frame = 1 
Query:   25 KLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFI------------------------------GNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPR 567
            K+YVGNL ++TN+DTL  AF QFG V ++ V  DRETG SRGFGFVTYGT QEA  A+ ++N+ +LDGR I+VN +  R    G XXXXX XXXXXX                                       GNL WNT  D L   F QYG V D+IVM DRETG SRGFGFVTYA+   A  AI+  +  +  GR I+VN++  R
Sbjct:    4 KIYVGNLSWNTNDDTLRDAFGQFGQVLDSIVMRDRETGRSRGFGFVTYGTQQEADNAISSMNDQELDGRRIKVNGANQRSGGGGGXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLSWNTNDDTLRQVFSQYGNVLDSIVMRDRETGRSRGFGFVTYASEGEASGAIQTANNIELDGRQIKVNLANAR 214
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A2K3NJ11_TRIPR (Ribonucleoprotein chloroplastic-like (Fragment) n=3 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NJ11_TRIPR)

HSP 1 Score: 156 bits (394), Expect = 1.770e-44
Identity = 81/187 (43.32%), Postives = 113/187 (60.43%), Query Frame = 1 
Query:   13 SEGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQR 573
            SE  K++VGNL +D +++ L++ F Q G V+ A V  +RET  SRGFGFVT  T +E + A++  +  +LDGR++ VN + PR    G                G +L++GNL W+     L   F ++G+VQ+A V+ DRET  SRGFGFVT A+ D    AI ALDG +F GR IRVN++E R R
Sbjct:   42 SEDLKIFVGNLPFDVDSERLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSTAEEVERAVNKFSRYELDGRSLTVNKAAPR----GAPRPERPPRSFDSGPPGLRLYVGNLPWDVDNSSLEQLFSEHGKVQNARVVYDRETSRSRGFGFVTMASEDDVNEAIAALDGQEFNGRAIRVNVAEERPR 224
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: UPI0008F8C106 (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI0008F8C106)

HSP 1 Score: 155 bits (393), Expect = 1.990e-44
Identity = 83/190 (43.68%), Postives = 115/190 (60.53%), Query Frame = 1 
Query:   16 EGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPR----ERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQR 573
            EG KL+VGNL ++ +N  L + F   G V + ++ TDRETG+SRGFGFVT  T +EA+  ++  N   L+GR + VN + PR    ER A               + G+K+++GNL W    + L   F ++G+V +A V+ DRETG SRGFGFVTY++      AI ALDGT+  GR +RVNI+E R R
Sbjct:   39 EGSKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMATVEEAEKGVELFNRYSLEGRLLTVNKAAPRGTKFERPA-------------QPASGSKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTELDGRPLRVNIAEDRSR 215
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A9NWK5_PICSI (Uncharacterized protein n=2 Tax=Picea sitchensis TaxID=3332 RepID=A9NWK5_PICSI)

HSP 1 Score: 156 bits (395), Expect = 7.430e-44
Identity = 82/186 (44.09%), Postives = 112/186 (60.22%), Query Frame = 1 
Query:   16 EGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQR 573
            E  KL+VGNL ++ +N  L + F   G V + ++ TDRETG+SRGFGFVT GT +EA+  ++  N   L+GR + VN + PR                   S  NK+++GNL W    + L   F ++G+V +A V+ DRETG SRGFGFVTY++      AI ALDGTD  GR +RVNI+E R+R
Sbjct:  111 EWTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVELFNRHSLEGRLLTVNKAAPRGTKV--------ERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAEDRRR 288
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: UPI001FB16B66 (28 kDa ribonucleoprotein, chloroplastic-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB16B66)

HSP 1 Score: 153 bits (387), Expect = 2.300e-42
Identity = 83/191 (43.46%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:   13 SEGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPR----ERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQR 573
            SE  K++VGNL YD +++ L+Q F Q G V+ A V  +RET  SRGFGFVT  +  EA+ A++  N  ++DGR + VN + PR    ERA                   NK+++GNL W+  +D L   F +YG+V DA V+ DRETG SRGFGFV+ +  D    AI  LDG    GR IR N++E R R
Sbjct:  127 SEDAKVFVGNLSYDVDSEKLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSSVAEAEKAVEMFNRYEIDGRLLTVNKAAPRGSKPERAP---RSSFPSSGSSFGQPSNKIYVGNLPWSVDSDRLQQVFSKYGKVLDARVVIDRETGRSRGFGFVSMSNEDEQNEAITNLDGQSLDGRAIRANVAEERPR 314
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BLAST of jgi.p|Trimin1|158087 vs. uniprot
Match: A0A2G9FY44_9LAMI (Splicing factor 3b, subunit 4 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9FY44_9LAMI)

HSP 1 Score: 152 bits (384), Expect = 2.820e-42
Identity = 77/181 (42.54%), Postives = 106/181 (58.56%), Query Frame = 1 
Query:   25 KLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRGFGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGXXXXXXXXXXXXXASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSSRGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPR 567
            KL+VGNL +  ++  L+  F Q G V+   V  D+ +G SRGFGFVT  T +EA AA   LN  +L GR +RVN   P  ++               ++  N++++GNL W    D L A F + G V++A V+ DRE+G SRGFGFVTY +A+    AI ALDG D  GR+IRV+ +E R
Sbjct:   99 KLFVGNLPFSVDSAELAGLFEQTGNVEMVEVIYDKHSGRSRGFGFVTMSTKEEADAAAQKLNGYELQGRVLRVNSGPPPPKSENSLFRGSRGRERTGSNSSNRVYVGNLAWGVDNDALEALFSEQGNVREARVVYDRESGRSRGFGFVTYGSAEEVNNAIEALDGMDLNGRSIRVSPAEDR 279
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158087 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC59_9STRA2.880e-124100.00Chloroplast 29 kDa ribonucleoprotein n=1 Tax=Tribo... [more]
A0A835Z0H8_9STRA8.300e-8767.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBQ9_9STRA7.770e-6457.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8H8M5M6_9AGAM4.870e-4750.00RNA recognition motif protein n=1 Tax=Ceratobasidi... [more]
A0A8H8JW91_9AGAM6.420e-4547.39RNA recognition motif protein n=2 Tax=Ceratobasidi... [more]
A0A2K3NJ11_TRIPR1.770e-4443.32Ribonucleoprotein chloroplastic-like (Fragment) n=... [more]
UPI0008F8C1061.990e-4443.68hypothetical protein n=1 Tax=Acinetobacter baumann... [more]
A9NWK5_PICSI7.430e-4444.09Uncharacterized protein n=2 Tax=Picea sitchensis T... [more]
UPI001FB16B662.300e-4243.4628 kDa ribonucleoprotein, chloroplastic-like n=1 T... [more]
A0A2G9FY44_9LAMI2.820e-4242.54Splicing factor 3b, subunit 4 n=1 Tax=Handroanthus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:97288..99959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158087|e_gw1.5.24.1
BRITEko00000,ko00001,ko03009,ko03036
KEGG Pathwayko05130,map05130
KEGG koko:K11294
GOsGO:0001101,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008187,GO:0008266,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009894,GO:0009895,GO:0009941,GO:0010033,GO:0010319,GO:0010468,GO:0010605,GO:0010608,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033993,GO:0034357,GO:0042221,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043489,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055035,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:0097305,GO:1901363,GO:1901700,GO:1902369
Description29 kDa ribonucleoprotein
COG categoryA
Max annot lvl35493|Streptophyta
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,37NJY@33090|Viridiplantae,3G7EB@35493|Streptophyta,4JIQ1@91835|fabids
Evalue5.94e-42
Seed ortholog102107.XP_008243948.1
Hectar predicted targeting categoryother localisation
TranscriptId158409
TrackFilteredModels1
ProteinId158087
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158087gene_2261Tribonema minus UTEX_B_3156 geneContig_5 97288..99959 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2261_1exon_2261_1Tribonema minus UTEX_B_3156 exonContig_5 97288..97333 +
exon_2261_2exon_2261_2Tribonema minus UTEX_B_3156 exonContig_5 98292..98553 +
exon_2261_3exon_2261_3Tribonema minus UTEX_B_3156 exonContig_5 99038..99120 +
exon_2261_4exon_2261_4Tribonema minus UTEX_B_3156 exonContig_5 99772..99959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2261CDS_2261Tribonema minus UTEX_B_3156 CDSContig_5 97288..97333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158087Trimin1|158087|e_gw1.5.24.1Tribonema minus UTEX_B_3156 polypeptideContig_5 97288..99959 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2261 ID=mRNA_2261|Name=jgi.p|Trimin1|158087|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_5:97288..99959+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACGGATCTGAAGGCTGCAAATTATACGTCGGGAACCTCGGCTA
TGACACCAACAACGACACGCTCTCGCAGGCGTTCTCCCAGTTCGGCGCCG
TGCAGGAGGCGTCCGTCGCCACGGACCGCGAGACCGGCAGCTCGCGCGGC
TTCGGCTTCGTGACCTACGGCACGCCCCAGGAGGCACAGGCCGCCATGGA
CAACCTCAACAACACGCAGCTCGACGGACGCACCATCCGCGTCAACCTGA
GCCAGCCCAGGGAGCGCGCCGCCGGCGGCGGCGGCTTCGGCGGTGGCAGC
GGCGGCGGCGGCGGTGCCAGCGAGGGCAACAAGCTCTTCATCGGCAACCT
GGGCTGGAACACGACCACCGACGACTTGCACGCGGCTTTCGGCCAGTACG
GCCAGGTCCAGGACGCCATCGTGATGACCGACAGGGAGACCGGCTCGTCG
CGCGGCTTTGGCTTTGTCACGTACGCCACCGCCGACTCCGCACAGGCGGC
CATCCGCGCCCTCGACGGCACCGACTTTGGCGGCCGCAACATCCGCGTCA
ACATCTCCGAGCCCAGGCAGCGCTACTAG
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protein sequence of jgi.p|Trimin1|158087

>Trimin1|158087|e_gw1.5.24.1 ID=Trimin1|158087|e_gw1.5.24.1|Name=jgi.p|Trimin1|158087|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
MSYGSEGCKLYVGNLGYDTNNDTLSQAFSQFGAVQEASVATDRETGSSRG
FGFVTYGTPQEAQAAMDNLNNTQLDGRTIRVNLSQPRERAAGGGGFGGGS
GGGGGASEGNKLFIGNLGWNTTTDDLHAAFGQYGQVQDAIVMTDRETGSS
RGFGFVTYATADSAQAAIRALDGTDFGGRNIRVNISEPRQRY*
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mRNA from alignment at Contig_5:97288..99959+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2261 ID=mRNA_2261|Name=jgi.p|Trimin1|158087|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2672bp|location=Sequence derived from alignment at Contig_5:97288..99959+ (Tribonema minus UTEX_B_3156 )
ATGTCGTACGGATCTGAAGGCTGCAAATTATACGTCGGGAACCTCGGTGA
GTGGAATTGAGGATTCGTGAATGCACGGCGGCTTTCCCTCGCTGTCACAC
TGGTTTGGCAAACCCACATTATACTTCCTTCAGCCAAGGCGCAATCAACG
CAAGTGCAAATGTGTCTCTAGTTCTGCTGCAGACCTATCTTCTGCCTCAC
CCAGTGCAAGGCCCGAAGCTGGCCTAAATGCCGCGTAGCCATGTGATGCC
TGTTGCACTCAGTTCAAGCTGTGCAAAGCTTTCGTTCACAACGCTGTTTG
ATGTATGCGCTACTGCTACTGTGCCTTATGAATCCGCTGCGAGCACTGGT
CGCTCTTGCATGTTGGATGGCGATAAGTCGCCACAGCTTTGGCAGCATCT
AGTGGAACACAAGTAGCCTGGTACTTTTTATTAATTCTCGCTCAGGGCTT
GAAAAAGCCCAGATGATTGGCATCTAGCTGTAAGGAATCTACATGTCGTA
TGACAGTCTGAAAAGTGTTGCAACGACACCTGGTACTTCTATATTCTTGT
ACACATCATCTTTTGAATGCATGGAACAGGGCGCACTGCAATGCGATGGT
GGACACACAGTCACCATCTCACGAGATTCATTCATTCTGTGATCTAAGGA
TTGTCTGTGGTTGCTCTTCTTGATGAGGTTTGTTTGATGTCCCTCACCTC
TGACGTGACACCATAAAGCAAGCATCACCGTCAGTGATGACATGGCTGCT
GTCGCCAGCAGTGGTGTCGTGACTTTTCCTCTGGTGTGAATGTGAGCAAA
GCAGTGCAAGGCAACCACGTCTTGCGCTGCTGGCTTTACATGTATACATG
TGTACCACCATGACAAGTGTTGAATACACGGCAGCCGCCCGTGTCTTCAC
CGTTGTCTGCCATTATTAAGCGTCATTGCAAGCGTCGTTCCGCTGATCGC
AGCAGTCAACTGACCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCCCGACC
ACAGGCTATGACACCAACAACGACACGCTCTCGCAGGCGTTCTCCCAGTT
CGGCGCCGTGCAGGAGGCGTCCGTCGCCACGGACCGCGAGACCGGCAGCT
CGCGCGGCTTCGGCTTCGTGACCTACGGCACGCCCCAGGAGGCACAGGCC
GCCATGGACAACCTCAACAACACGCAGCTCGACGGACGCACCATCCGCGT
CAACCTGAGCCAGCCCAGGGAGCGCGCCGCCGGCGGCGGCGGCTTCGGCG
GTGGCAGCGGCGGCGGGTACAGCGGCGGCGGTGGCGGCGGCTACAGCGGC
GGCGGCGGCGGCGGCGGCGGTGGGTCTCGTGGTGGCTACGGTGCTGGCGG
CGGTGGGGGTGGTGCGTGCATTATCAATGCGCCCCCATCGCTTGTGTGTT
GAGTTTGCATCAGCTGTGTTGTGCTACTAGTAGATAAGAGGCATATCGAG
TTTGATGCAGGATGTACATAGAGTTTGTTGGGTTCCTCGCTATTTTAGTT
GCGGCACGCCCGTATGCATCTACGCGCACTCCTGGCTGAGCGTACATTGC
TGCCTGCTGTTGAGCCAGCAGTGTGACGTGCCTGCCCTGCGTGCACACAT
TTACGCTTGTATTGTGCTGAAGATCTGTTGGCATTTGCTGTGCGCAGGCT
ACGGCGGCAGCAGCGGTGGCTACGGCGGCAGCAGCGGCGGCTACGGCGCC
AGCAGCGGCGGTGGCGGCGGCAGCTGGGGCGGCGGCGGTGGTGGCCGCAG
CGGCGGTGCCAGCGAGGGCAACAAGCTCTTCATCGGCAACCTGGGCTGGA
ACACGACCACCGACGACTTGCACGCGGCTTTCGGTGAGCTGATTTAACCT
CGTATTTGTTTTTTTCTTTTTTTGTTGAGCTCATCAAGCCTCAAATTTAG
GAGAAGCGTGACCAATGCATCGTTTTCAAGATTGGCTGCTCCTCTTTGCA
ATGAAGGGGTGGGATGGCAGGATGTGTGCAAACTCTTATCACTGCACCAA
CTTGGACTTCGAAGCATGTTGTTTTTCAACTTCAGTTGCTGTGAACATTT
TTGTGCACAAGATGGGTGCAGGAGCAGGATACCTTCACGATCATGATATG
CTTGTTGCCAGCGATTTGGTGGATCACACAATTCGAAGTCAGCCATGCGG
TATCACCACGGCGCATCATGCTCACTCCTCGTCCTACTATTTCTGGCAGC
GATGATTGCTGTCTTTGAGCTGTTGTATAGGTCACTGTATCATGCACCTG
TTCCATGGGTGCAGCACACCTCAATTTGCACCGCCCTTGCACACTCACAG
CATACTCGTCGATCACGTGCCCCCTGTTTATCATGGCCAAAACAGCCAGA
TCCATGACGCCATCGCCATGTTGTGCCTGTGTCACGACAACAGCATGCCC
CAGCTCGCACACCGCACACACACATACTGACCTCCCCCCCCCCCCCCCCG
CATACATACATACGCCCATTTTCCCTGTCTGCAGGCCAGTACGGCCAGGT
CCAGGACGCCATCGTGATGACCGACAGGGAGACCGGCTCGTCGCGCGGCT
TTGGCTTTGTCACGTACGCCACCGCCGACTCCGCACAGGCGGCCATCCGC
GCCCTCGACGGCACCGACTTTGGCGGCCGCAACATCCGCGTCAACATCTC
CGAGCCCAGGCAGCGCTACTAG
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Coding sequence (CDS) from alignment at Contig_5:97288..99959+

>mRNA_2261 ID=mRNA_2261|Name=jgi.p|Trimin1|158087|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=579bp|location=Sequence derived from alignment at Contig_5:97288..99959+ (Tribonema minus UTEX_B_3156 )
ATGTCGTACGGATCTGAAGGCTGCAAATTATACGTCGGGAACCTCGGCTA
TGACACCAACAACGACACGCTCTCGCAGGCGTTCTCCCAGTTCGGCGCCG
TGCAGGAGGCGTCCGTCGCCACGGACCGCGAGACCGGCAGCTCGCGCGGC
TTCGGCTTCGTGACCTACGGCACGCCCCAGGAGGCACAGGCCGCCATGGA
CAACCTCAACAACACGCAGCTCGACGGACGCACCATCCGCGTCAACCTGA
GCCAGCCCAGGGAGCGCGCCGCCGGCGGCGGCGGCTTCGGCGGTGGCAGC
GGCGGCGGCGGCGGTGCCAGCGAGGGCAACAAGCTCTTCATCGGCAACCT
GGGCTGGAACACGACCACCGACGACTTGCACGCGGCTTTCGGCCAGTACG
GCCAGGTCCAGGACGCCATCGTGATGACCGACAGGGAGACCGGCTCGTCG
CGCGGCTTTGGCTTTGTCACGTACGCCACCGCCGACTCCGCACAGGCGGC
CATCCGCGCCCTCGACGGCACCGACTTTGGCGGCCGCAACATCCGCGTCA
ACATCTCCGAGCCCAGGCAGCGCTACTAG
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