mRNA_224 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346559
Unique NamemRNA_224
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|346559 vs. uniprot
Match: A0A835Z0Y3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y3_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.050e-41
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 2 
Query:  122 MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTXXXXXXXXXXXXXXXXXXXXXXXXITALRARVLLFLLPIALSFPLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAPVLLPQEIYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPTATLARAELVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPAPLEHVEQAKPSALPAHSEXXXXXXXXXXXQPAAPVWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPTLLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPALQAHQQRQKAQEKHPVP 1426
            MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTXXXXXXXXXXXXXXXXXXXXXXXXITALRARVLLFLLPIALSFPLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAPVLLPQEIYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPTATLARAELVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPAPLEHVEQAKPSALPAHSEXXXXXXXXXXXQPAAPVWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPTLLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPALQAHQQRQKAQEKHPVP
Sbjct:    1 MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTXXXXXXXXXXXXXXXXXXXXXXXXITALRARVLLFLLPIALSFPLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAPVLLPQEIYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPTATLARAELVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPAPLEHVEQAKPSALPAHSEXXXXXXXXXXXQPAAPVWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPTLLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPALQAHQQRQKAQEKHPVP 435
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346559 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0Y3_9STRA2.050e-41100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:765787..768470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346559|estExt_Genemark1.C_Ctg_3_t10211
Hectar predicted targeting categorysignal anchor
TranscriptId346881
TrackFilteredModels1
ProteinId346559
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346559gene_224Tribonema minus UTEX_B_3156 geneContig_3 765787..768470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346559Trimin1|346559|estExt_Genemark1.C_Ctg_3_t10211Tribonema minus UTEX_B_3156 polypeptideContig_3 765787..768349 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_224_5exon_224_5Tribonema minus UTEX_B_3156 exonContig_3 765787..765843 -
exon_224_4exon_224_4Tribonema minus UTEX_B_3156 exonContig_3 766762..767670 -
exon_224_3exon_224_3Tribonema minus UTEX_B_3156 exonContig_3 767740..767838 -
exon_224_2exon_224_2Tribonema minus UTEX_B_3156 exonContig_3 767940..768132 -
exon_224_1exon_224_1Tribonema minus UTEX_B_3156 exonContig_3 768300..768470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_224CDS_224Tribonema minus UTEX_B_3156 CDSContig_3 768300..768349 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_224UTR5_224Tribonema minus UTEX_B_3156 five_prime_UTRContig_3 768350..768470 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_224 ID=mRNA_224|Name=jgi.p|Trimin1|346559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1429bp|location=Sequence derived from alignment at Contig_3:765787..768470- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCGCAGTCCCGACTTGATGCTCCGCCCCTTGAGCGCAGGCCCCGCCAAAG
CCGCACATGTTTGCGACTGATTGGCATCCATCAGGAATGGCACATCGTCG
TCTTTGGGATCGTAGTTGTTGATGCTGGAGAACTGGGCGCCGTCTGAAGT
GAGGATCACAAGCTCCCCGCGCACCACCCCCTGCCTCAACCTCCTCATCG
TCATCGTCGCCGCCCTCACCATCCTCATCGTGATCGCCGCCGCCCTCACT
GTGCTCATCGACATCGCCGCCGCCCTCACCGTCCTCATCGTCATCACTGC
TCTCCGCGCCCGAGTGCTCCTCTTCCTGCTCCCCATTGCCCTCAGCTTCC
CGCTCCTGCTCCTTCCGCCGCAGGCGCACCGCGCTCCGCTGCTGCAGCGG
CAGCGGAGCGTGGTGCGCGGGGAGCAGGTGAGGCCGACGGCGACGTTGGC
GCGCGGGGAGCAGCAGGTGAAGCCCACGGCGGCGCTGGCGCGCCGGGAGC
AGGTAAAGCCGACGGCAGCGCTGGCGCGCGCGGAGCCAGTGGCTGCGCCG
GTGCTGCTGCCGCAGGAGATATATTTGAAGCCGACGACGCCGTCCGCGGG
CGGGGAGCAGGTGAAGCCGCCGGCGCTGTCGGTGTGCGTGGAGCAGGTGC
AGCCGTCGGCGCCGCTCGCGTGCGGGGAGCAGGTGAAGCCGATGGCGGCG
CAGGTGAAGCCGACGACGGTGCAGCCGCCAGCGCCGCTCGCGTGCACGGA
GCAGGTGAACCAGACGGCGGCACAGGTGAACAAGCCGACGGCGACGCTGG
CGCGCGCAGAGCTGGTGGCTGCGCCGCTCGCGTGCGGGGAGCAGGTGAAC
CAGACGGCGGCACAGGTGAACAAGCCGACGGCGACGCTGGCGCGCGCAGA
GCTGGTGGCTGCGCCGCTCGCGTGCGGGGAGCAGGTGCAGCCGCCGGCGC
CACTCGAGCATGTGGAGCAGGCGAAGCCGTCAGCGTTGCCGGCGCACTCA
GAGCCGGTGCAGTCGCCGGCGCATGTGGAGCCTGTGCAGCCAGCGGCGCC
GGTCTGGCGCCGGGAGCAGGTGCAGCCGGCGGCGCCGGTCTGGCGCGGGG
AGCAGGCGAAGCCGTCAGCGTTGCCGGCGCACTCAGAGCCGGTGCAGTCA
CCGGCGCACGCGGAGCCGGTGCAGCCGGCGGCGCCGGTCTGGCGCGGGGA
GCAGGTGCAGCTGCCAACGCTGCTGCCACAGGGGGACCAGGTGCAGCCAC
CAGCGCCGCTGCCGCGGGGAGAGCCGGTGAAGCCGATGGCGCTGCTGCCT
CGGGAGGAACCGGTGAAGCCGACGGCACCGCTGCCGTGGGGGGGGGCAGA
GAAGCCGAATGCGCGTGCACCGGCTCTGCAGGCCCACCAGCAGCGGCAGA
AGGCGCAGGAGAAGCATCCGGTGCCATAG
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protein sequence of jgi.p|Trimin1|346559

>Trimin1|346559|estExt_Genemark1.C_Ctg_3_t10211 ID=Trimin1|346559|estExt_Genemark1.C_Ctg_3_t10211|Name=jgi.p|Trimin1|346559|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=436bp
MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTILIVIAAALTVLIDIAA
ALTVLIVITALRARVLLFLLPIALSFPLLLLPPQAHRAPLLQRQRSVVRG
EQVRPTATLARGEQQVKPTAALARREQVKPTAALARAEPVAAPVLLPQEI
YLKPTTPSAGGEQVKPPALSVCVEQVQPSAPLACGEQVKPMAAQVKPTTV
QPPAPLACTEQVNQTAAQVNKPTATLARAELVAAPLACGEQVNQTAAQVN
KPTATLARAELVAAPLACGEQVQPPAPLEHVEQAKPSALPAHSEPVQSPA
HVEPVQPAAPVWRREQVQPAAPVWRGEQAKPSALPAHSEPVQSPAHAEPV
QPAAPVWRGEQVQLPTLLPQGDQVQPPAPLPRGEPVKPMALLPREEPVKP
TAPLPWGGAEKPNARAPALQAHQQRQKAQEKHPVP*
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mRNA from alignment at Contig_3:765787..768470-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_224 ID=mRNA_224|Name=jgi.p|Trimin1|346559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2684bp|location=Sequence derived from alignment at Contig_3:765787..768470- (Tribonema minus UTEX_B_3156 )
TCGCAGTCCCGACTTGATGCTCCGCCCCTTGAGCGCAGGCCCCGCCAAAG
CCGCACATGTTTGCGACTGATTGGCATCCATCAGGAATGGCACATCGTCG
TCTTTGGGATCGTAGTTGTTGATGCTGGAGAACTGGGCGCCGTCTGAAGT
GAGGATCACAAGCTCCCCGCGGTGGGCAGATGGTCCTGGTACTGTGACCA
GCACAGCGAAACACTCACTACCGTGGTAGAAGAGCATCGACGGGTGCAGC
AGCGGCAGCTGCCCGTTCGCTTCTGCCTCACTGAGAAGCCACATGGTCAC
CAGCCCCGGGGCGCATGCTGCGGCCGCCTCCACCACAGCACCACCCCCTG
CCTCAACCTCCTCATCGTCATCGTCGCCGCCCTCACCATCCTCATCGTGA
TCGCCGCCGCCCTCACTGTGCTCATCGACATCGCCGCCGCCCTCACCGTC
CTCATCGTCATCACTGCTCTCCGCGCCCGAGTGCTCCTCTTCCTGCTCCC
CATTGCCCTCAGCTTCCCGCTCCTGCTCCTTGTCACGCGCCCCATCTTCC
CACTCCTGCTCCTCATTACGCGCCCCACCTTCCCCCTCCAGATCCATTAC
ATCATGCTCTGCCGCCGCCGGCACCTCGGCAGCCGCCGCAGGCGCACCGC
GCTCCGCTGCTGCAGCGGCAGCGGAGCGTGGTGCGCGGGGAGCAGGTGAG
GCCGACGGCGACGTTGGCGCGCGGGGAGCAGGTGAAGCGGACGGCGGCGC
TGGCGCGGGGGACTTAGGTGAAGCGGACAGCGCCGCCCGCGCGCGGGGAG
CAGGTGAAGCCCACGGCGGCGCTGGCGCGCCGGGAGCAGGTAAAGCCGAC
GGCAGCGCTGGCGCGCGCGGAGCCAGTGGCTGCGCCGGTGCTGCTGCCGC
AGGAGATATATTTGAAGCCGACGACGCCGTCCGCGGGCGGGGAGCAGGTG
AAGCCGCCGGCGCTGTCGGTGTGCGTGGAGCAGGTGCAGCCGTCGGCGCC
GCTCGCGTGCGGGGAGCAGGTGAAGCCGATGGCGGCGCAGGTGAAGCCGA
CGACGGTGCAGCCGCCAGCGCCGCTCGCGTGCACGGAGCAGGTGAACCAG
ACGGCGGCACAGGTGAACAAGCCGACGGCGACGCTGGCGCGCGCAGAGCT
GGTGGCTGCGCCGCTCGCGTGCGGGGAGCAGGTGAACCAGACGGCGGCAC
AGGTGAACAAGCCGACGGCGACGCTGGCGCGCGCAGAGCTGGTGGCTGCG
CCGCTCGCGTGCGGGGAGCAGGTGCAGCCGCCGGCGCCACTCGAGCATGT
GGAGCAGGCGAAGCCGTCAGCGTTGCCGGCGCACTCAGAGCCGGTGCAGT
CGCCGGCGCATGTGGAGCCTGTGCAGCCAGCGGCGCCGGTCTGGCGCCGG
GAGCAGGTGCAGCCGGCGGCGCCGGTCTGGCGCGGGGAGCAGGCGAAGCC
GTCAGCGTTGCCGGCGCACTCAGAGCCGGTGCAGTCACCGGCGCACGCGG
AGCCGGTGCAGCCGGCGGCGCCGGTCTGGCGCGGGGAGCAGGTGCAGCTG
CCAACGCTGCTGCCACAGGGGGACCAGGTGCAGCCACCAGCGCCGCTGCC
GCGGGGAGAGCCGGTGAAGCCGATGGCGCTGCTGCCTCGGGAGGAACCGG
TGAAGCCGACGGCACCGCTGCCGTGGGGGGGGGCAGAGAAGCCGAATGCG
CGTGCACCGGTGTGTTCATGGTGGCACGCGTTGCCACTTCAAGCGCAGCC
AGCGACGCGACCTCTTCTTCCTCCTCTTCTGAGCTGCTGTCTGGGCCACG
GTCGTCTTCTTCCTCCTCTTCTGAGCTGCTATCTGGGCCACGCTGCGTAT
CTGAAGTCTTTACTGACAAGCCAGCATCTGGCCCTCCTGCCATGGCAGCA
GATGATATGGAAGGGGGGGCGCAAAGTGATATGAGAACATGCACTAATGA
CTATGTGCACCGCTAGGCAAGACGCTTTGAAAGTGTCATTGAACATGCGG
CAAATAAACTCTGAGTGCCGCCTGTTTTACACAATAATTGAACACATGGT
ATCTGAACAAGTGCATAGCTAAGCAACAGAAACCTTTTACGGCAAATACT
GTCTCTTATGCGTGCTTTGCAAAATTGCATCACAGTGAATGCACGGCTAA
GGAACAGTACTTTTTTAGTTATGAGTGCAGCTGCCTACTCTCACACAGCG
ACAGTTTGCATACATCACATACAGCCTGCAATGCAACCACCCATGATATA
AAAGGAAGGTGTGAGCATGTCTGTGTTTACCGAACCATCCACATGTGGCT
CCGAAACAAGCCCAGTAGCAGCAGTGGTGTGCGTGGCCGCAGCAGCAGTT
GAAGAGGAATCAGCTGACGCAGTAGCAGCAGCATACGGGATCATGGGCAC
TGATGAGCTTACTGAGGGATGTGCTGCATTTTGGCACTGATGCTGCCGCC
TGTTCTGCAGGCTCACCAGCAGCGCTGTACGATGTAATGCAGCAGATTAT
GCGTCCGGAGCAGGCCTATCAGCAGCGCTGGCAGGAATTGCAGCTGCAAG
CAGCACAAGCATTCCGAGCAAATGAACACAGTACAGGATAATTCTTTGTG
GGGTATCCTCACCTGATGCTGCTTCAGGCTCTGCAGGCCCACCAGCAGCG
GCAGAAGGCGCAGGAGAAGCATCCGGTGCCATAG
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Coding sequence (CDS) from alignment at Contig_3:765787..768470-

>mRNA_224 ID=mRNA_224|Name=jgi.p|Trimin1|346559|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1308bp|location=Sequence derived from alignment at Contig_3:765787..768470- (Tribonema minus UTEX_B_3156 )
ATGCTGGAGAACTGGGCGCCGTCTGAAGTGAGGATCACAAGCTCCCCGCG
CACCACCCCCTGCCTCAACCTCCTCATCGTCATCGTCGCCGCCCTCACCA
TCCTCATCGTGATCGCCGCCGCCCTCACTGTGCTCATCGACATCGCCGCC
GCCCTCACCGTCCTCATCGTCATCACTGCTCTCCGCGCCCGAGTGCTCCT
CTTCCTGCTCCCCATTGCCCTCAGCTTCCCGCTCCTGCTCCTTCCGCCGC
AGGCGCACCGCGCTCCGCTGCTGCAGCGGCAGCGGAGCGTGGTGCGCGGG
GAGCAGGTGAGGCCGACGGCGACGTTGGCGCGCGGGGAGCAGCAGGTGAA
GCCCACGGCGGCGCTGGCGCGCCGGGAGCAGGTAAAGCCGACGGCAGCGC
TGGCGCGCGCGGAGCCAGTGGCTGCGCCGGTGCTGCTGCCGCAGGAGATA
TATTTGAAGCCGACGACGCCGTCCGCGGGCGGGGAGCAGGTGAAGCCGCC
GGCGCTGTCGGTGTGCGTGGAGCAGGTGCAGCCGTCGGCGCCGCTCGCGT
GCGGGGAGCAGGTGAAGCCGATGGCGGCGCAGGTGAAGCCGACGACGGTG
CAGCCGCCAGCGCCGCTCGCGTGCACGGAGCAGGTGAACCAGACGGCGGC
ACAGGTGAACAAGCCGACGGCGACGCTGGCGCGCGCAGAGCTGGTGGCTG
CGCCGCTCGCGTGCGGGGAGCAGGTGAACCAGACGGCGGCACAGGTGAAC
AAGCCGACGGCGACGCTGGCGCGCGCAGAGCTGGTGGCTGCGCCGCTCGC
GTGCGGGGAGCAGGTGCAGCCGCCGGCGCCACTCGAGCATGTGGAGCAGG
CGAAGCCGTCAGCGTTGCCGGCGCACTCAGAGCCGGTGCAGTCGCCGGCG
CATGTGGAGCCTGTGCAGCCAGCGGCGCCGGTCTGGCGCCGGGAGCAGGT
GCAGCCGGCGGCGCCGGTCTGGCGCGGGGAGCAGGCGAAGCCGTCAGCGT
TGCCGGCGCACTCAGAGCCGGTGCAGTCACCGGCGCACGCGGAGCCGGTG
CAGCCGGCGGCGCCGGTCTGGCGCGGGGAGCAGGTGCAGCTGCCAACGCT
GCTGCCACAGGGGGACCAGGTGCAGCCACCAGCGCCGCTGCCGCGGGGAG
AGCCGGTGAAGCCGATGGCGCTGCTGCCTCGGGAGGAACCGGTGAAGCCG
ACGGCACCGCTGCCGTGGGGGGGGGCAGAGAAGCCGAATGCGCGTGCACC
GGCTCTGCAGGCCCACCAGCAGCGGCAGAAGGCGCAGGAGAAGCATCCGG
TGCCATAG
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