mRNA_2226 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CAU3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU3_9STRA) HSP 1 Score: 391 bits (1004), Expect = 4.540e-138 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 Query: 1 QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAVMQALHDLGCPCDCPR 543 QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAVMQALHDLGCPCDCPR Sbjct: 1 QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAVMQALHDLGCPCDCPR 181
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835ZG85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG85_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.140e-61 Identity = 98/182 (53.85%), Postives = 123/182 (67.58%), Query Frame = 1 Query: 4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSIN-KLNMHTILWAVQSGCPFGRWSSRLCATCRSENA-AVMQALHDLGCPCDCPR 543 V SLV AAA+ AS LAWL+SE PNF T TM AA+ G + LEWLRA GCPH+INTIC + + P H+EW+R+C+GGDWSP+G+ MLV +L A+WLR++GAPWP +L + + + +H +LWAV+ GCPFGRWSS +CA S A A ALHDLGCPCDCPR Sbjct: 291 VMSLVDAAALGYCASVLAWLRSEQPNFNFTSITMEAAAYWGWMPALEWLRAHGCPHDINTICTALLHSAIATPPHMEWVRACNGGDWSPRGVADMLVTALMCGTPTLARWLRQQGAPWPKNLAGIVKVLGGSVKVHMVLWAVREGCPFGRWSSEVCAVLTSPQAMAAKHALHDLGCPCDCPR 472
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835Z7G5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G5_9STRA) HSP 1 Score: 177 bits (449), Expect = 8.400e-53 Identity = 91/183 (49.73%), Postives = 116/183 (63.39%), Query Frame = 1 Query: 10 SLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGA-LATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLCATCRSEN---AAVMQALHDLGCPCDCPR 543 +L A M DA+ L WLQS T +TM +AA GA LA L+WLRAQGCPH+I+ IC ++ + P + W+RSC GGDWSPQGMT ML K+L + A+WLR EGA WP DL + + S + L ILWA+Q GCPFGRW++++C + AV +ALHDLGCPC CPR Sbjct: 53 TLSDTATMANDAAVLQWLQSRNA-VQFTSKTMLVAADGGAVLANLKWLRAQGCPHDIDKICQIVLDTPWTPPPVMAWVRSCGGGDWSPQGMTDMLAKALLNNTPALARWLRAEGAQWPKDLAEVVTSKADILISSNILWALQQGCPFGRWTTQVCGLLEKSHDSGGAVKRALHDLGCPCACPR 234
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CDR0_9STRA (GPS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR0_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.350e-51 Identity = 95/186 (51.08%), Postives = 118/186 (63.44%), Query Frame = 1 Query: 4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMA--PRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLCATCRSENA---AVMQALHDLGCPCDCPR 543 V +L+ AAAM DA+AL WLQS P T TM +AA G L TL+WLRA CPH+IN I ++ + ++ P L W+RSC GGDWS QGMT MLV++L +S A WLR EGA WP DL + + + + + +LWAVQ GCPFGRWSS +C +A AV ALHDLGCPC CPR Sbjct: 447 VVTLLDAAAMSDDAAALHWLQSRQP-LEFTGVTMQLAAQWGGLPTLKWLRAHECPHDINAIASILLKSHFVVATPPKLAWVRSCGGGDWSAQGMTDMLVEALAHSTPALAHWLRAEGARWPADLAEVVRTKVEVVRPRNLLWAVQQGCPFGRWSSEICEVLSEHSAQAAAVKLALHDLGCPCTCPR 631
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835YR45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR45_9STRA) HSP 1 Score: 177 bits (449), Expect = 4.120e-50 Identity = 92/184 (50.00%), Postives = 112/184 (60.87%), Query Frame = 1 Query: 10 SLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICD--LMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDA-LNSINKLNMHTILWAVQSGCPFGRWSSRLCATCR---SENAAVMQALHDLGCPCDCPR 543 +LV AAAM DAS L WL + P T TM +AA G L T++WLRAQGC H+IN + L P +EW+RSC GGDWS QGMT MLV++L +S A+WLR EGA WP DL + + + T+LWAVQ GCPF W+S +C +E AAV ALHDLGCPC CPR Sbjct: 307 TLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPR 490
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CKN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN3_9STRA) HSP 1 Score: 173 bits (439), Expect = 8.990e-49 Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 1 Query: 4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSI-NKLNMHTILWAVQSGCPFGRWSSRLCATCRSENA---AVMQALHDLGCPCDCPR 543 V ++V AAAM + + L WL S+ T TM AA L +L+WL QGC ++IN I L+ + Y+ P + W+RS GGDWSPQGMT ML +L S G A+WLR EGAPWP +L +N N + TILWAVQ GCPFGRW++R+C S +A AV +ALHDLGCPC CPR Sbjct: 288 VLTVVDAAAMAANPTVLQWLHSQHAA-EFTSITMQEAASNAVLPSLKWLHQQGCAYDINQILQLVLVSVYVTPPAVAWVRSFGGGDWSPQGMTDMLATALLRSTPGLARWLRVEGAPWPQNLAQLVNRAGNYVKPLTILWAVQHGCPFGRWTTRVCERLESSSASGGAVKRALHDLGCPCACPR 470
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835YSQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ3_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.400e-48 Identity = 88/184 (47.83%), Postives = 115/184 (62.50%), Query Frame = 1 Query: 4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLC-ATCRS--ENAAVMQALHDLGCPCDCPR 543 V +L AAA + L WLQS T TM MAA AL ++WL+AQGCPH+IN +C ++ P L+W++SC GGDWSPQGM R+L +L G +WLR EGA WP+DL + + + I ++ ILWAVQ GCPFGRW++ +C + RS + AAV + LHDLGCPC CPR Sbjct: 169 VRTLTDAAATAYSVAVLQWLQSRHA-LEFTGMTMLMAASNAALPNMKWLQAQGCPHDINEVCIMLMRVGGTEPL-LDWVQSCGGGDWSPQGMARLLRSALSNDTPGLPRWLRAEGARWPEDLAEVVTTEIEEVKPSMILWAVQQGCPFGRWTTEVCDSLVRSHPDGAAVKRTLHDLGCPCACPR 350
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835Z1B9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B9_9STRA) HSP 1 Score: 161 bits (407), Expect = 3.730e-47 Identity = 79/159 (49.69%), Postives = 99/159 (62.26%), Query Frame = 1 Query: 82 FTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDAL-NSINKLNMHTILWAVQSGCPFGRWSSRLC----ATCRSENAAVMQALHDLGCPCDCPR 543 FT + AA G LA L+WLRA GCPH+I+ + + N+ P W+RSC GGDWSP GMT ML +L + A+WLR EGA WP+DL + + I L TI+WAVQ GCPFGRW+S++C +TC AA +ALHDLGCPC CPR Sbjct: 23 FTSITMQVAAAAGSGQLANLKWLRAHGCPHDISAVSQTLLHNNSATPPSAAWVRSCGGGDWSPHGMTLMLEAALLDATPTMARWLRAEGARWPEDLAEVVATDIKHLTPSTIVWAVQQGCPFGRWTSQVCDLLESTCAGSGAAK-RALHDLGCPCACPR 180
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835Z262_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z262_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.200e-44 Identity = 77/157 (49.04%), Postives = 95/157 (60.51%), Query Frame = 1 Query: 31 MHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAV 498 M D + L WLQS T TM AA G L L++LRAQGCPH+IN IC L+ + P + W+R C GGDWSPQGMT ML K+L + A+WLR EGA WP DL + + S ++ L TILWAVQ GCPFGRW+S++C S A Sbjct: 1 MANDTAVLQWLQSR-NEVQFTSITMQFAAANGVLPNLQFLRAQGCPHDINKICRLVVKSLRRTPPVMAWVRCCGGGDWSPQGMTDMLAKALLNTTPALARWLRAEGAQWPKDLAEVVTSDVDDLTPSTILWAVQQGCPFGRWTSQVCELLESSQACA 156
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CE86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE86_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.790e-44 Identity = 82/158 (51.90%), Postives = 105/158 (66.46%), Query Frame = 1 Query: 4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGA-LATLEWLRAQGCPHNINTICD-LMRCN-DYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRL 465 + +LV AAA DA+ L WL S P T TM +AA G L TL+WL AQGCPH+IN +C+ LMRCN +AP LEW+RSC GGDWS QGMT MLV++L + A+WLR EGA WP DL D + + ++ ++ +LWA+Q GCPFGRW+ L Sbjct: 178 IVALVDAAAAFSDATVLRWLHSRQP-LQFTSITMKVAAARGGGLPTLKWLYAQGCPHDINEVCEGLMRCNLSGVAPPMLEWVRSCGGGDWSAQGMTSMLVEALAHMTPTLARWLRAEGAQWPADLSDVVVAKVDSVHPRNLLWAIQQGCPFGRWTFEL 334 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2226 ID=mRNA_2226|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_6:1667214..1667756- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAAGTGACGTCGCTCGTGCACGCTGCGGCCATGCACCGCGACGCGAGCGCback to top protein sequence of jgi.p|Trimin1|128718 >Trimin1|128718|gw1.6.2.1 ID=Trimin1|128718|gw1.6.2.1|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLback to top mRNA from alignment at Contig_6:1667214..1667756- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2226 ID=mRNA_2226|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_6:1667214..1667756- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:1667214..1667756- >mRNA_2226 ID=mRNA_2226|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_6:1667214..1667756- (Tribonema minus UTEX_B_3156 )back to top |