mRNA_2226 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128718
Unique NamemRNA_2226
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CAU3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU3_9STRA)

HSP 1 Score: 391 bits (1004), Expect = 4.540e-138
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
Query:    1 QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAVMQALHDLGCPCDCPR 543
            QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAVMQALHDLGCPCDCPR
Sbjct:    1 QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAVMQALHDLGCPCDCPR 181          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835ZG85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG85_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.140e-61
Identity = 98/182 (53.85%), Postives = 123/182 (67.58%), Query Frame = 1
Query:    4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSIN-KLNMHTILWAVQSGCPFGRWSSRLCATCRSENA-AVMQALHDLGCPCDCPR 543
            V SLV AAA+   AS LAWL+SE PNF  T  TM  AA+ G +  LEWLRA GCPH+INTIC  +  +    P H+EW+R+C+GGDWSP+G+  MLV +L       A+WLR++GAPWP +L   +  +   + +H +LWAV+ GCPFGRWSS +CA   S  A A   ALHDLGCPCDCPR
Sbjct:  291 VMSLVDAAALGYCASVLAWLRSEQPNFNFTSITMEAAAYWGWMPALEWLRAHGCPHDINTICTALLHSAIATPPHMEWVRACNGGDWSPRGVADMLVTALMCGTPTLARWLRQQGAPWPKNLAGIVKVLGGSVKVHMVLWAVREGCPFGRWSSEVCAVLTSPQAMAAKHALHDLGCPCDCPR 472          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835Z7G5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 8.400e-53
Identity = 91/183 (49.73%), Postives = 116/183 (63.39%), Query Frame = 1
Query:   10 SLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGA-LATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLCATCRSEN---AAVMQALHDLGCPCDCPR 543
            +L   A M  DA+ L WLQS       T +TM +AA  GA LA L+WLRAQGCPH+I+ IC ++    +  P  + W+RSC GGDWSPQGMT ML K+L  +    A+WLR EGA WP DL + + S  + L    ILWA+Q GCPFGRW++++C      +    AV +ALHDLGCPC CPR
Sbjct:   53 TLSDTATMANDAAVLQWLQSRNA-VQFTSKTMLVAADGGAVLANLKWLRAQGCPHDIDKICQIVLDTPWTPPPVMAWVRSCGGGDWSPQGMTDMLAKALLNNTPALARWLRAEGAQWPKDLAEVVTSKADILISSNILWALQQGCPFGRWTTQVCGLLEKSHDSGGAVKRALHDLGCPCACPR 234          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CDR0_9STRA (GPS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.350e-51
Identity = 95/186 (51.08%), Postives = 118/186 (63.44%), Query Frame = 1
Query:    4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMA--PRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLCATCRSENA---AVMQALHDLGCPCDCPR 543
            V +L+ AAAM  DA+AL WLQS  P    T  TM +AA  G L TL+WLRA  CPH+IN I  ++  + ++   P  L W+RSC GGDWS QGMT MLV++L +S    A WLR EGA WP DL + + + +  +    +LWAVQ GCPFGRWSS +C      +A   AV  ALHDLGCPC CPR
Sbjct:  447 VVTLLDAAAMSDDAAALHWLQSRQP-LEFTGVTMQLAAQWGGLPTLKWLRAHECPHDINAIASILLKSHFVVATPPKLAWVRSCGGGDWSAQGMTDMLVEALAHSTPALAHWLRAEGARWPADLAEVVRTKVEVVRPRNLLWAVQQGCPFGRWSSEICEVLSEHSAQAAAVKLALHDLGCPCTCPR 631          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835YR45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR45_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.120e-50
Identity = 92/184 (50.00%), Postives = 112/184 (60.87%), Query Frame = 1
Query:   10 SLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICD--LMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDA-LNSINKLNMHTILWAVQSGCPFGRWSSRLCATCR---SENAAVMQALHDLGCPCDCPR 543
            +LV AAAM  DAS L WL +  P    T  TM +AA  G L T++WLRAQGC H+IN +    L        P  +EW+RSC GGDWS QGMT MLV++L +S    A+WLR EGA WP DL +  +     +   T+LWAVQ GCPF  W+S +C       +E AAV  ALHDLGCPC CPR
Sbjct:  307 TLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPR 490          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CKN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN3_9STRA)

HSP 1 Score: 173 bits (439), Expect = 8.990e-49
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 1
Query:    4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNSI-NKLNMHTILWAVQSGCPFGRWSSRLCATCRSENA---AVMQALHDLGCPCDCPR 543
            V ++V AAAM  + + L WL S+      T  TM  AA    L +L+WL  QGC ++IN I  L+  + Y+ P  + W+RS  GGDWSPQGMT ML  +L  S  G A+WLR EGAPWP +L   +N   N +   TILWAVQ GCPFGRW++R+C    S +A   AV +ALHDLGCPC CPR
Sbjct:  288 VLTVVDAAAMAANPTVLQWLHSQHAA-EFTSITMQEAASNAVLPSLKWLHQQGCAYDINQILQLVLVSVYVTPPAVAWVRSFGGGDWSPQGMTDMLATALLRSTPGLARWLRVEGAPWPQNLAQLVNRAGNYVKPLTILWAVQHGCPFGRWTTRVCERLESSSASGGAVKRALHDLGCPCACPR 470          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835YSQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ3_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.400e-48
Identity = 88/184 (47.83%), Postives = 115/184 (62.50%), Query Frame = 1
Query:    4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLC-ATCRS--ENAAVMQALHDLGCPCDCPR 543
            V +L  AAA     + L WLQS       T  TM MAA   AL  ++WL+AQGCPH+IN +C ++       P  L+W++SC GGDWSPQGM R+L  +L     G  +WLR EGA WP+DL + + + I ++    ILWAVQ GCPFGRW++ +C +  RS  + AAV + LHDLGCPC CPR
Sbjct:  169 VRTLTDAAATAYSVAVLQWLQSRHA-LEFTGMTMLMAASNAALPNMKWLQAQGCPHDINEVCIMLMRVGGTEPL-LDWVQSCGGGDWSPQGMARLLRSALSNDTPGLPRWLRAEGARWPEDLAEVVTTEIEEVKPSMILWAVQQGCPFGRWTTEVCDSLVRSHPDGAAVKRTLHDLGCPCACPR 350          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835Z1B9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.730e-47
Identity = 79/159 (49.69%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   82 FTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDAL-NSINKLNMHTILWAVQSGCPFGRWSSRLC----ATCRSENAAVMQALHDLGCPCDCPR 543
            FT     +  AA  G LA L+WLRA GCPH+I+ +   +  N+   P    W+RSC GGDWSP GMT ML  +L  +    A+WLR EGA WP+DL + +   I  L   TI+WAVQ GCPFGRW+S++C    +TC    AA  +ALHDLGCPC CPR
Sbjct:   23 FTSITMQVAAAAGSGQLANLKWLRAHGCPHDISAVSQTLLHNNSATPPSAAWVRSCGGGDWSPHGMTLMLEAALLDATPTMARWLRAEGARWPEDLAEVVATDIKHLTPSTIVWAVQQGCPFGRWTSQVCDLLESTCAGSGAAK-RALHDLGCPCACPR 180          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A835Z262_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z262_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.200e-44
Identity = 77/157 (49.04%), Postives = 95/157 (60.51%), Query Frame = 1
Query:   31 MHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWLRAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRLCATCRSENAAV 498
            M  D + L WLQS       T  TM  AA  G L  L++LRAQGCPH+IN IC L+  +    P  + W+R C GGDWSPQGMT ML K+L  +    A+WLR EGA WP DL + + S ++ L   TILWAVQ GCPFGRW+S++C    S  A  
Sbjct:    1 MANDTAVLQWLQSR-NEVQFTSITMQFAAANGVLPNLQFLRAQGCPHDINKICRLVVKSLRRTPPVMAWVRCCGGGDWSPQGMTDMLAKALLNTTPALARWLRAEGAQWPKDLAEVVTSDVDDLTPSTILWAVQQGCPFGRWTSQVCELLESSQACA 156          
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Match: A0A836CE86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE86_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.790e-44
Identity = 82/158 (51.90%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    4 VTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGA-LATLEWLRAQGCPHNINTICD-LMRCN-DYMAPRHLEWMRSCSGGDWSPQGMTRMLVKSLEYSIDGGAKWLRREGAPWPDDLGDALNS-INKLNMHTILWAVQSGCPFGRWSSRL 465
            + +LV AAA   DA+ L WL S  P    T  TM +AA  G  L TL+WL AQGCPH+IN +C+ LMRCN   +AP  LEW+RSC GGDWS QGMT MLV++L +     A+WLR EGA WP DL D + + ++ ++   +LWA+Q GCPFGRW+  L
Sbjct:  178 IVALVDAAAAFSDATVLRWLHSRQP-LQFTSITMKVAAARGGGLPTLKWLYAQGCPHDINEVCEGLMRCNLSGVAPPMLEWVRSCGGGDWSAQGMTSMLVEALAHMTPTLARWLRAEGAQWPADLSDVVVAKVDSVHPRNLLWAIQQGCPFGRWTFEL 334          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836CAU3_9STRA4.540e-138100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZG85_9STRA1.140e-6153.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7G5_9STRA8.400e-5349.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDR0_9STRA1.350e-5151.08GPS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YR45_9STRA4.120e-5050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKN3_9STRA8.990e-4949.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSQ3_9STRA1.400e-4847.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1B9_9STRA3.730e-4749.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z262_9STRA1.200e-4449.04Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CE86_9STRA1.790e-4451.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:1667214..1667756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128718|gw1.6.2.1
Hectar predicted targeting categoryother localisation
TranscriptId129040
TrackFilteredModels1
ProteinId128718
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128718gene_2226Tribonema minus UTEX_B_3156 geneContig_6 1667214..1667756 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2226_1exon_2226_1Tribonema minus UTEX_B_3156 exonContig_6 1667214..1667756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2226CDS_2226Tribonema minus UTEX_B_3156 CDSContig_6 1667214..1667756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128718Trimin1|128718|gw1.6.2.1Tribonema minus UTEX_B_3156 polypeptideContig_6 1667214..1667756 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2226 ID=mRNA_2226|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_6:1667214..1667756- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAGTGACGTCGCTCGTGCACGCTGCGGCCATGCACCGCGACGCGAGCGC
ACTGGCGTGGCTGCAGTCCGAGCTGCCGAACTTCACGCTGACAGAGAGGA
CGATGCATATGGCGGCATTCGAGGGGGCGCTGGCGACGCTCGAGTGGCTG
CGCGCCCAGGGCTGCCCGCACAACATCAACACAATCTGCGACTTGATGAG
GTGCAACGATTATATGGCGCCGCGGCACCTGGAGTGGATGCGCAGCTGCA
GCGGCGGCGACTGGAGCCCGCAAGGCATGACGCGAATGCTCGTCAAGTCG
CTTGAGTACAGCATCGACGGTGGCGCCAAGTGGCTGCGCCGGGAAGGGGC
ACCGTGGCCGGATGACCTGGGTGACGCTCTTAATTCCATAAATAAATTGA
ACATGCACACTATCCTCTGGGCAGTGCAATCGGGCTGCCCCTTCGGCCGC
TGGTCTTCAAGGCTCTGCGCCACTTGCAGGTCTGAAAATGCTGCGGTCAT
GCAAGCGTTGCATGACCTCGGGTGCCCCTGTGACTGCCCGCGT
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protein sequence of jgi.p|Trimin1|128718

>Trimin1|128718|gw1.6.2.1 ID=Trimin1|128718|gw1.6.2.1|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp
QVTSLVHAAAMHRDASALAWLQSELPNFTLTERTMHMAAFEGALATLEWL
RAQGCPHNINTICDLMRCNDYMAPRHLEWMRSCSGGDWSPQGMTRMLVKS
LEYSIDGGAKWLRREGAPWPDDLGDALNSINKLNMHTILWAVQSGCPFGR
WSSRLCATCRSENAAVMQALHDLGCPCDCPR
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mRNA from alignment at Contig_6:1667214..1667756-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2226 ID=mRNA_2226|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_6:1667214..1667756- (Tribonema minus UTEX_B_3156 )
CAAGTGACGTCGCTCGTGCACGCTGCGGCCATGCACCGCGACGCGAGCGC ACTGGCGTGGCTGCAGTCCGAGCTGCCGAACTTCACGCTGACAGAGAGGA CGATGCATATGGCGGCATTCGAGGGGGCGCTGGCGACGCTCGAGTGGCTG CGCGCCCAGGGCTGCCCGCACAACATCAACACAATCTGCGACTTGATGAG GTGCAACGATTATATGGCGCCGCGGCACCTGGAGTGGATGCGCAGCTGCA GCGGCGGCGACTGGAGCCCGCAAGGCATGACGCGAATGCTCGTCAAGTCG CTTGAGTACAGCATCGACGGTGGCGCCAAGTGGCTGCGCCGGGAAGGGGC ACCGTGGCCGGATGACCTGGGTGACGCTCTTAATTCCATAAATAAATTGA ACATGCACACTATCCTCTGGGCAGTGCAATCGGGCTGCCCCTTCGGCCGC TGGTCTTCAAGGCTCTGCGCCACTTGCAGGTCTGAAAATGCTGCGGTCAT GCAAGCGTTGCATGACCTCGGGTGCCCCTGTGACTGCCCGCGT
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Coding sequence (CDS) from alignment at Contig_6:1667214..1667756-

>mRNA_2226 ID=mRNA_2226|Name=jgi.p|Trimin1|128718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_6:1667214..1667756- (Tribonema minus UTEX_B_3156 )
CAAGTGACGTCGCTCGTGCACGCTGCGGCCATGCACCGCGACGCGAGCGC
ACTGGCGTGGCTGCAGTCCGAGCTGCCGAACTTCACGCTGACAGAGAGGA
CGATGCATATGGCGGCATTCGAGGGGGCGCTGGCGACGCTCGAGTGGCTG
CGCGCCCAGGGCTGCCCGCACAACATCAACACAATCTGCGACTTGATGAG
GTGCAACGATTATATGGCGCCGCGGCACCTGGAGTGGATGCGCAGCTGCA
GCGGCGGCGACTGGAGCCCGCAAGGCATGACGCGAATGCTCGTCAAGTCG
CTTGAGTACAGCATCGACGGTGGCGCCAAGTGGCTGCGCCGGGAAGGGGC
ACCGTGGCCGGATGACCTGGGTGACGCTCTTAATTCCATAAATAAATTGA
ACATGCACACTATCCTCTGGGCAGTGCAATCGGGCTGCCCCTTCGGCCGC
TGGTCTTCAAGGCTCTGCGCCACTTGCAGGTCTGAAAATGCTGCGGTCAT
GCAAGCGTTGCATGACCTCGGGTGCCCCTGTGACTGCCCGCGT
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