mRNA_2188 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158727
Unique NamemRNA_2188
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A836CA11_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA11_9STRA)

HSP 1 Score: 454 bits (1168), Expect = 9.260e-162
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1 
Query:    1 MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFVKG 660
            MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFVKG
Sbjct:    1 MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFVKG 220
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A6H5L9J7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9J7_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.970e-70
Identity = 116/219 (52.97%), Postives = 154/219 (70.32%), Query Frame = 1 
Query:   10 LNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGA--QPFGEATVLKWFVQVCMGVQHMHANQ-MLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFVK 657
            L HPC++ L D F+SAD R +CL  +YCESGDL + +K A     P GE TVL WF Q+C+GV ++H  + +LHRD+KP N+FL +   +V++GDFGLAK+++   +   +EVGTPYYTSPEM  +QPY FPSDVWSLG++LYE+L+L+ PFR R   DVVALV++V+    PPL   Y  EV AL  WMLQK P RRP +   LA   +R+H+ +FVK
Sbjct:  157 LKHPCVLTLFDVFLSADSRLVCLTTTYCESGDLAKIVKHASKTKSPLGEKTVLGWFAQLCLGVHNLHEEKKVLHRDIKPNNVFLMDSKKIVQLGDFGLAKVISDGDKQVKAEVGTPYYTSPEMCNNQPYGFPSDVWSLGIVLYELLSLDVPFRSR---DVVALVSQVIKAPPPPLPEVYSDEVTALARWMLQKDPLRRPTLTQALACQPLRRHMSSFVK 372
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A835YLD2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.140e-61
Identity = 105/194 (54.12%), Postives = 130/194 (67.01%), Query Frame = 1 
Query:    1 MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQ--PFGEATVLKWFVQVCMGVQHMHA-NQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVK----ALC 561
            M+ L HP LV L DAF+S DGR +CL M+YCESGDL + I+ A  +  P  E  V+ WF Q C+G+ H+HA +Q+LHRD+KP NL L E   L+R+GDFGLAK L    +T  +EVGTPYYTSPEM     Y +PSDVWSLGV+L+EMLAL+ PFR R   D V LV+ V     P L  +YG EV+    ALC
Sbjct:   48 MRQLRHPFLVTLVDAFISVDGRLVCLAMTYCESGDLAKVIEHARKRSAPLAEKQVVSWFCQACLGIAHLHARHQLLHRDIKPANLLLTESSRLLRIGDFGLAKTLGSHGQTVKTEVGTPYYTSPEMCSGAAYGYPSDVWSLGVVLHEMLALDVPFRGR---DTVELVSRVACAAPPALPARYGTEVRDERRALC 238
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A7S3X4R7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X4R7_9SPIT)

HSP 1 Score: 189 bits (480), Expect = 4.550e-56
Identity = 93/220 (42.27%), Postives = 148/220 (67.27%), Query Frame = 1 
Query:    1 MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIK--GAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLG--EGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRT 648
            ++ L+HP +V+ H+ F+S  G  +C+VM+YCE GDL R IK   A  +PF EA VL WFVQ+ M ++++H+ ++LHRDLK  N+F+   +   L+++GDFG+AK++ G+   A++ +GTPYY SPE+  +QPYS+ SDVW+LG ILYEM AL+  +      +++ LV ++V +  PPL   Y  +++ L   ML K P +RP +  +LAM  +R+ +++
Sbjct:   37 LRSLDHPGIVRYHEHFVS--GETLCVVMAYCEGGDLSREIKRRAAAKRPFSEAQVLDWFVQMVMALRYVHSKRILHRDLKTQNIFIAHHQAKALIKLGDFGIAKVMEGSMAAASTVIGTPYYMSPEVCQNQPYSYKSDVWALGCILYEMCALQQAWN---GSNLLGLVYKIVQQKYPPLPETYSPKLRELVGLMLAKLPNQRPSLDEILAMGFIREFLQS 251
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A7S1CCJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCJ9_9STRA)

HSP 1 Score: 189 bits (480), Expect = 8.860e-56
Identity = 92/220 (41.82%), Postives = 145/220 (65.91%), Query Frame = 1 
Query:    1 MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPF--GEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFV 654
            +++L HP +V+  +AFMS D   +C+VM+YCE GDL   IK A  +    GE  +++W VQVCM + ++H  ++LHRD+KP N+FL     +V++GDFG+ ++L      A + +GTPYY SPE+  ++PY+  SDVW++GV+LYE++AL  PF  +   D  AL  E+++ + PPL   Y ++++ L A ML K P +RP++  +LA P ++KH+R  V
Sbjct:   70 LKMLKHPNIVEFVEAFMSRDMGTLCIVMAYCEGGDLIGKIKSARKRGMLIGEDQIMEWVVQVCMALAYLHDQRILHRDIKPHNVFLTNHSRVVKLGDFGVTRVLDSTLAMAKTTIGTPYYVSPEICKNKPYNNKSDVWAMGVMLYELVALRVPFDAK---DFTALRVEILNSNPPPLPRAYTSDLRRLVAEMLIKDPLKRPNVRALLARPYVQKHLRLLV 286
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A1R2B6N3_9CILI (Protein kinase domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B6N3_9CILI)

HSP 1 Score: 192 bits (488), Expect = 9.490e-56
Identity = 93/216 (43.06%), Postives = 144/216 (66.67%), Query Frame = 1 
Query:   10 LNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRA-HGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFV 654
            L+HP ++KL +AF S  G+ +C+VM Y + GDL   IK    + F E  ++ WFVQ+C+ ++H+H  ++LHRDLK  N+F+ + G  +++GDFG+AKML+   E A + VGTPYY SPE++ ++PY+F SD+WS+GV+LYEM AL  PF+  + HG    L  ++V     PL P+Y  E+K L A +L    ++RP +  VL +PL+ ++V+ F+
Sbjct:   59 LDHPYIIKLKEAFFSKKGK-LCIVMDYADGGDLNALIKTRKGEKFSEDQIISWFVQICLALKHIHDRKILHRDLKSQNIFMNKDGS-IKLGDFGIAKMLSQTMENAKTIVGTPYYLSPELIDNKPYNFKSDIWSMGVLLYEMCALVPPFQSNSIHG----LALKIVRGTYAPLGPEYSRELKLLLASLLSVDAKQRPSIHEVLKIPLILRNVQKFL 268
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A7S3UUL5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL5_HETAK)

HSP 1 Score: 182 bits (463), Expect = 1.500e-53
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 1 
Query:    1 MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGA--GAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFR 459
            ++++ HP +V+LHD F+S D + +CLVM+YCESGDL + +K A    +P  E T+L WF QV +G+ ++H + +LHRDLKP NLFL +   L+++GD GLAK+L+G  E  ++E GTPYYT+PEMV  QPY  PSDVWSLGV LYE LAL+ PFR
Sbjct:  139 LKMMQHPTIVQLHDVFLSRDRKLLCLVMTYCESGDLAQIVKEARHARRPLPERTLLSWFAQVFLGIHYLHEHHLLHRDLKPQNLFLTDSKKLIKIGDLGLAKLLSG-DERESAEAGTPYYTAPEMVNQQPYGLPSDVWSLGVCLYECLALQLPFR 292
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A7S1UB12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB12_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.820e-52
Identity = 87/214 (40.65%), Postives = 136/214 (63.55%), Query Frame = 1 
Query:   10 LNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTF 651
            LNHP +V   ++F++ +   +C+VM YC+ GDL   IK A  Q F E+ VL WFVQ+ +G+ +MH+N++LHRDLK  N+FL   G LV +GD G++K+L G  + A + +GTPYY SPE+  ++PY+  SD+W+LG +LYE+  L   F   +      L ++++    PP+ P+Y   ++ L   ML KSP  RPD+  +L +P ++K ++ F
Sbjct:   58 LNHPNIVGYKESFLTRNKESLCIVMEYCDGGDLCDVIKKARRQLFPESKVLHWFVQMALGLHYMHSNRILHRDLKTQNIFLLGNGRLV-LGDLGISKVLEGTMDFAQTCIGTPYYMSPEIFKNKPYNHKSDIWALGCVLYELTTLNHAFDAASLN---GLASKIIRGKYPPIHPKYSRNLRNLIDSMLDKSPSARPDLEDILKLPFIKKQIQHF 267
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A7S1EAI5_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1EAI5_HEMAN)

HSP 1 Score: 179 bits (454), Expect = 4.960e-52
Identity = 89/216 (41.20%), Postives = 133/216 (61.57%), Query Frame = 1 
Query:   10 LNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRL-RAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTFV 654
            L+HP +++  +AF   D   +C+VM+Y E GDL   IK    +PF E T+L WFVQ+ + ++H+H  ++LHRDLK  N+FL   G L+++GDFG+AK+L    + A + +GTPYY SPE+   +PY+  SDVWS+GVILYE+  L  PF     HG    LV +++    PP++  +   +K L   +L K P+ RP +  VL MP+M   +  F+
Sbjct:   60 LSHPNIIEYREAF--EDQGQLCIVMAYAEGGDLTGKIKAQNGRPFPEDTILDWFVQISLALKHVHDRKILHRDLKAQNIFLTGKGKLIKLGDFGIAKVLGSTADVAKTAIGTPYYLSPEICEGKPYNNKSDVWSMGVILYELCMLRCPFDASNLHG----LVLKIIRGVYPPISANFSPSLKNLVTILLTKKPQSRPSINQVLTMPVMTGRISQFL 269
[Close]
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Match: A0A7S3HJZ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJZ2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.910e-52
Identity = 90/214 (42.06%), Postives = 135/214 (63.08%), Query Frame = 1 
Query:   10 LNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGEATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAKMLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPDMATVLAMPLMRKHVRTF 651
            LNHP +V+  D+F+S +   +C+ M YC+ GDL   IK A    F E+ +L WFVQ+ +G+ +MH N++LHRDLK  N+F+   G LV +GD G++K+L G  + A + +GTPYY SPE+  ++PYS+ SDVW+LG +LYEM  L   F   +      L T++V    PP+ P+Y   +  L   MLQ +P++RPD+  +L  P ++KH+  F
Sbjct:   60 LNHPNIVRYIDSFLSKNKESLCICMEYCDGGDLASQIKAARKNLFSESKILHWFVQLTLGLHYMHGNKVLHRDLKTQNVFMLGNGRLV-LGDLGISKVLDGTMDFAQTCIGTPYYMSPEIFKNKPYSYKSDVWALGCVLYEMTTLNHAFDANSLN---GLATKIVKGKYPPINPKYSKHLSELIGQMLQLNPQQRPDLDQILRKPFIKKHIVNF 269
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158727 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA11_9STRA9.260e-162100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5L9J7_9PHAE3.970e-7052.97Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YLD2_9STRA2.140e-6154.12Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3X4R7_9SPIT4.550e-5642.27Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S1CCJ9_9STRA8.860e-5641.82Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1R2B6N3_9CILI9.490e-5643.06Protein kinase domain-containing protein n=2 Tax=S... [more]
A0A7S3UUL5_HETAK1.500e-5354.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UB12_9STRA2.820e-5240.65Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1EAI5_HEMAN4.960e-5241.20Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A7S3HJZ2_9STRA6.910e-5242.06Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:1250790..1256201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158727|e_gw1.6.163.1
BRITEko00000,ko01000,ko01001,ko03036,ko03400
KEGG koko:K08857
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0589@1|root,KOG0589@2759|Eukaryota
Evalue1.4e-53
Seed ortholog2880.D7FHW8
Hectar predicted targeting categoryother localisation
TranscriptId159049
TrackFilteredModels1
ProteinId158727
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158727gene_2188Tribonema minus UTEX_B_3156 geneContig_6 1250790..1256201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158727Trimin1|158727|e_gw1.6.163.1Tribonema minus UTEX_B_3156 polypeptideContig_6 1250790..1256201 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2188_1exon_2188_1Tribonema minus UTEX_B_3156 exonContig_6 1250790..1250863 +
exon_2188_2exon_2188_2Tribonema minus UTEX_B_3156 exonContig_6 1252623..1252671 +
exon_2188_3exon_2188_3Tribonema minus UTEX_B_3156 exonContig_6 1252751..1252861 +
exon_2188_4exon_2188_4Tribonema minus UTEX_B_3156 exonContig_6 1254864..1255208 +
exon_2188_5exon_2188_5Tribonema minus UTEX_B_3156 exonContig_6 1256118..1256201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2188CDS_2188Tribonema minus UTEX_B_3156 CDSContig_6 1250790..1250863 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2188 ID=mRNA_2188|Name=jgi.p|Trimin1|158727|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_6:1250790..1256201+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGCTGAACCACCCGTGCCTGGTGAAGTTGCACGACGCCTTCAT
GTCCGCGGACGGCAGAGGAATCTGCCTGGTCATGAGCTACTGCGAGTCGG
GCGACCTGGGGCGCGCGATTAAGGGGGCGGGCGCTCAGCCGTTTGGAGAA
GCCACAGTGCTCAAGTGGTTCGTGCAGGTGTGCATGGGGGTGCAGCACAT
GCACGCCAACCAGATGCTGCACAGGGACCTCAAGCCCTGCAACCTCTTCC
TGGGGGAGGGCGGCCTCCTCGTGCGCGTGGGCGACTTCGGCCTGGCCAAG
ATGCTCACGGGTGCGCACGAAACCGCCACCTCGGAGGTCGGCACCCCCTA
CTACACGTCCCCCGAGATGGTCCTCAGCCAGCCGTACTCCTTCCCGAGCG
ACGTCTGGAGCCTCGGCGTGATCCTGTACGAGATGCTGGCGCTGGAGACG
CCGTTCCGGCTGCGCGCGCACGGCGACGTCGTCGCGCTCGTGACGGAGGT
CGTGTCGCGCGACGCGCCGCCGCTCGCGCCGCAGTACGGCGCCGAGGTGA
AGGCGCTGTGCGCGTGGATGCTGCAGAAGAGCCCCGAGCGGCGACCCGAC
ATGGCCACGGTGCTGGCCATGCCGCTCATGCGCAAGCACGTGCGGACGTT
CGTCAAGGGGTGA
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protein sequence of jgi.p|Trimin1|158727

>Trimin1|158727|e_gw1.6.163.1 ID=Trimin1|158727|e_gw1.6.163.1|Name=jgi.p|Trimin1|158727|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
MQVLNHPCLVKLHDAFMSADGRGICLVMSYCESGDLGRAIKGAGAQPFGE
ATVLKWFVQVCMGVQHMHANQMLHRDLKPCNLFLGEGGLLVRVGDFGLAK
MLTGAHETATSEVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALET
PFRLRAHGDVVALVTEVVSRDAPPLAPQYGAEVKALCAWMLQKSPERRPD
MATVLAMPLMRKHVRTFVKG*
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mRNA from alignment at Contig_6:1250790..1256201+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2188 ID=mRNA_2188|Name=jgi.p|Trimin1|158727|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5412bp|location=Sequence derived from alignment at Contig_6:1250790..1256201+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGCTGAACCACCCGTGCCTGGTGAAGTTGCACGACGCCTTCAT
GTCCGCGGACGGCAGAGGAATCTGGTGAGAATCGTTGGAAAGACTACCGT
AACCCCTCTGATGTTGATTTGCGCAGTACCTTGCGGCATGAGAAGTGACC
GCAGAGACATAACGGACATCCAGCCTTGCTGGAGGTTTCATGAGCCAGGA
CCATGAACACTTGAGGATGCAAACTTTCCCTGCTGCCATCTTTGTGAGCC
AAATGCGTACGCTGCAGGCAGTGACATGTGCAAGCTGTCGAGGTGACATC
TTTGCATGGCATGGCAGGACACAGATCGGGGCAGTTTTGCGACCTTACAA
AGCACCGGCAAGAAGTACACACTGCAGCCCGTTCACACTGCAGCCCGTTT
CTTGCCATGCATCTGGTTAGTACACCGCGCAGCATCACGCAACTCTTTGA
GGGAGGGCACCAGCCTCGAGAGGCGCACGCCTTAACAATAAACCAGTGCT
CAGCATAGTTGTGGTGAGGCAAGGTCAGCAAGTGTCGCCTGAGACGTGTT
CATGCACTGATGCCCGAGGATCCCCGCCCCGTAAATATGGCACCAGGTGC
TTGGTGTGTTCATGTAGTACTACAAGTGGGCAGCGTTCTCAATGTGTGGC
AGGAAATCGCCTTGTCGTGCAGGTGCTGCAGAATTTGCAGTTGGTCAGCG
CGCATGAGCAGTGTAAGTAGGCAAGCGCGCTGATGTTTACACTTCGACAA
GTGACTCTCTCCCTGTCTGCACGGCAGCCAGTCCCTCACCTTTTTAATGC
GGGGGGTCACGCAAGTCGAGCCATGCATACAGCACGCCACTGGTTGCATG
TCGGTATCTTTAAAATCCTCGCTCAATGAGAGTTGCAGCAACTTGCAGCT
GGGCTGGGGCTGTGTGTATCAAGCTCTCATTGTGACAAGACAAGAGCACG
CGCACACCGCTGCGCGCTGGCCTCCTTCAGGAAGGCACCGCTGGTCGCTG
CTGCAATTAGGGTCAGCGCTAGGGTCAGGGTTAGAGTCAGAATCAAAATT
CGGATTACAGGTAGGGTCAGGATTAGGGTGTTGGGCACCAGCTCGCGGCA
GCGCGCACGCGCACGCGCACAGCGTTGCGCAGCCGCATCAGTGAGCAGCA
AGCCGCCGCTCGACACGCGGCCATCAGCGCACACACCTACAGTAGCTGAG
CCTCGCTGCATTCCGACCAGGCCACAGCGAACCTCCGATGCATATGCACT
GCGCATGCGCTTGCTGCGGCCAGCAGCGAGTATGGATATGGACTGTTCCG
CTCTTTATGAGCCTCGCTCCGCCTGCCAATACGAGTCGTCATCAGCGCTC
TTCACATGTGTAGGCTAACAGTGTAACAAAGGCTTGCTGTTGGTTATTAA
TGCCAGCTAGCTATTTATAATAAAGTTGAAACAGTCATTAACGGCGTCTT
GTGCGTTTGCACATAGTGTACAAAGCAAAGCTTCATTCCGAACGCTGCGG
AGCGCATGACAAGGCACGCTTTTGCCACAACTGATGGAAGCCCGGCGAGA
GCAGGAGGCGCAGCAGATGGCTGCAAAAAGGCAACGGAAGGGGAAAACTG
AGGTTACTCCAAAGGGGGCAAACATGGGAGTGGGGAGTGGGGGGGGTCAC
CATCACGACACATACCTACAGTACCATCACCACACACATACATACCCATC
CCCCTCATCCCTACATGTTCGCGTATGCCTCCGTTGAAGAGCGCCGGTCT
TCTCTCTTGTCTTCAGGCGCGATTTCTCTCGCCGCTGATCACTGCTGCTG
CCCCCCCCCCCCCCCCCCCTTCTATCCCCCCAGCCTGGTCATGAGCTACT
GCGAGTCGGGCGACCTGGGGCGCGCGATTAAGGTGGCGAAGGAGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGCGGCGGGGGGGGAGGAG
GGGGCGCGAAGGGGGCGGGCGCTCAGCCGTTTGGAGAAGCCACAGTGCTC
AAGTGGTTCGTGCAGGTGTGCATGGGGGTGCAGCACATGCACGCCAACCA
GATGCTGCACAGGGACCTCAAGGTGAGCACGTGAGCGAGTGGGCGAGTGA
GTGAGTGAGTGACTGAGTGACTGAGTGAGTGAGCGCGCCGTGGTGCTTGC
GCACACATGAAGAATTTGGCGCGGAGGCGCAATAGCAGGACGATGGGCAG
CAGTGCTCAGCGCAATTGAGTGCGCCGCGGTCCGCTGCGGTTCGCCGCAG
CGCCGCGACGAACATCCGCTCCACGGCAACCTCAACAATCAGAAGAGGGC
ACCGCCGAGGGAACGACGGTCATACACATGACGGCGGCATGGTGCGCGGG
AGACTACACACGGACATCAAGATGAGAGCGCACGCGCGCAGCGCTAACCC
TAACCCTAACCCTAATGCACATCCTGATGAACATCCGCTCCACGGTACCT
CGACGAAAAAGAGGGCACTGCTGCCGAGCGCACGGCGGTCGTAAACGCGA
TGGTGGTATAGTGCGCAGAAGGCTTCACAGGGACATCAAGATGCCAGAGC
CCGTGTGCGCACCGCAGCGGAACCGCGGCACTCGCGCATACATGCACGAC
CAACTCACGCATAGTGCGGCGATGCCAAAATGGTGGGGCAGCAGTGCTCA
ATGCGTGCACGCGCACCGCGGGGCGCTGCGGAGTACAGCGCAGACGCACG
GCGAGCATCTGATGCACCGTGACCCCAGAAAAGGGCACCGCCAGCGCACG
ACGGGCGTAAACGTGACGGCGGTGTGGTGCGCATGCGCCGCATACCATAG
GCGGAGAAGGCTTGCACAGCAGCCTCATGTAGGCGCTGATGACCTCACAT
GGGCAACATCGTCTGCCTTCAAGTGTAGCGCAGCGAGCCGCGCGCATCCC
GGCTGCTCGCACGCCAGTATCAGAAGTCATTCGGGGCGGACTCTGATACT
TTTTCACCAGAGACGTTGCGGAAGTACGCACCTTTGTCGGTGCGCATGGA
GACCTTTTCAAACAAGACAGATGTAGATCCTGATAGCATGCTAGACATCT
GCCATCTGGGCTCTTTCGCGCCCTGAGCAAGAATTAATGAAAAGTACACA
CTTTTAAGAGGCAGGGGGCCGGCTATTGTCCGTGCTGCCCCATGCAAATG
TTGTAACGGCAGCTCACAGGAAGCGCGGGATGCCAGTGCATCGGCGTCCG
TGGCTGTATCGTCCTGTGTAGAGCAAATCCGAGTCGCGAGTGGTCCTGAC
CCTAACCCTAAACATGATCCTTACTCTGACCCTGCGCTGCAAACGGTAGC
CCTAGCCCTAATTAAGATCCTACTGCGACCCTACACCCCAGTTGGACACT
GCGATTTCTATGGCACTGTGAAGGCCCAATAATGTGCTCCTCACGTTCAT
AGTGATGTGTGGATGAGAGGTTAGAGTAAGGGTAAGGTGCGGGGTCGGTA
TCAAGTTAGGGTAGGGTGACGCCCCAAGATCGCGCGTTGCACACTGATTT
GCCCTGACCGACTCTATGCCAACCTAACCCCCCTACGCCCCCCCCCCCCT
CCCCCCCCCACCCCCTGCCCAGCCCTGCAACCTTTTCCTGGGGGGGCGGC
CTCCTATGCCCCCTCCCCCCTACCCACCCTACCTCTCTGCCCTATATCAG
CACATGCTTCAACGCCACGGTGAGGCATGCACCCAAGGAACTGAGCCCCC
CAGACCCCCCTCCCCCCCTCCCTACTCCCCCCCACGCAGCCCTGCAATCT
CTTCCCGGGGGAGGGCTGCCTCCTCGTCCTCGCACCCCCAAACCTAACCC
CCTGCCCCCCCCCCCCCCGCCCCCCCCTCCCCCCCCCTGCAGCCCTGCAA
CCTCTTCCCTGGGGAGGGGCTGCCTCCTCGTCCTCGTGCCTGACCCTAAC
CCCCAAACCTAACCCCCTGCCCCCCCTCCCCCCCCCAACATACACACAGC
CTTGCAACCTCTTCCCGGGAGGAACGGGGCCTCCTCCTGCGCGTGGGCAA
CCGGAACCTCCTAACCTGACCCCCTGCCGCCCCCCGTGCCCCCCCCCCCC
CGCGCGCCCGCCCCCCTCTTGCAGCCCTGCAACCTCTTCCTGGGGGAGGG
CGGCCTCCTCGTGCGCGTGGGCGACTTCGGCCTGGCCAAGATGCTCACGG
GTGCGCACGAAACCGCCACCTCGGAGGTCGGCACCCCCTACTACACGTCC
CCCGAGATGGTCCTCAGCCAGCCGTACTCCTTCCCGAGCGACGTCTGGAG
CCTCGGCGTGATCCTGTACGAGATGCTGGCGCTGGAGACGCCGTTCCGGC
TGCGCGCGCACGGCGACGTCGTCGCGCTCGTGACGGAGGTCGTGTCGCGC
GACGCGCCGCCGCTCGCGCCGCAGTACGGCGCCGAGGTGAAGGCGCTGTG
CGCGTGGATGCTGCAGAAGGTACGTGCATACTTCAAGTAGCAGTTGAAGT
TTAAGTGGTGACGCGCGCACGGCGACGTGGTGGCGCTCGTGACGGAGCTC
GTCTCGCGCGATGCGCCGCCGCTCGCGCCGCAGTACGGCGCCGAGGTGAA
GGCGCTGTGCGCGTGGATGCTGCAGAAGGTGCGTGGTACATACGTCAAGT
AGCGGTTGAAGTGTAAGTGGTGACGCGCGCACGGCGACGTGGTGGCGCTC
GTGACAGAGGTCGTGTGGCGCGACGCGCCGCCGCTCGCGCTGCAGTACGG
CGCCAACGTGAAGACGCAGTGCGCATGGGTGGTGCAGAAGGCGCGTCGCG
CGTATGCGCTAAATAGAGTTGGGCTTGTACTCAGGGGTGAGTGCTGAGTT
AGGTCTAGGGTGTTGCTAGGGCTAGGACCAGAGCTTGCGCAATGCGCCGC
CGCTCGAGCCGCAGTACGGCGCCCACATAAAAGGCGCTGTGCGCGTGGGT
GTTGCACAAGGTGAGCATATCCGAGCACTTGGCCAGACAACCAGGTACCA
AAGCGCACCGTACCTGTTGTTGAGTGCGTGCTGTGCAGAGCCCAGAACAA
CAAACCGTACGATCGCTGCAGCTGCCAACTGCCAGCACATGTGCTGCCTC
GACCAGACTGACTCTGTGAAAACTTTGCACTCTCTAAGGCCCGATTCCGC
AACTGTCGCATATTACCGCAACTGCCGTAATCGTAACGCGCGCGTGTGTG
TGCTAAGAGCACAGAACGGCGAACGTGGCTGCATGAACGCTGTAGCAGTC
AAATGCTGCCTCCCCCAGACTGACACCGTGCAAGAACTTCGTACTCTTAA
AAGCGCCTCTTCCCCAACTGTTGCATGCGGCTTTGTAACAGTTGTAACTG
TCACATGCGTGTGCGTGTGCCCGCGCAGAGCCCCGAGCGGCGACCCGACA
TGGCCACGGTGCTGGCCATGCCGCTCATGCGCAAGCACGTGCGGACGTTC
GTCAAGGGGTGA
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Coding sequence (CDS) from alignment at Contig_6:1250790..1256201+

>mRNA_2188 ID=mRNA_2188|Name=jgi.p|Trimin1|158727|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_6:1250790..1256201+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGCTGAACCACCCGTGCCTGGTGAAGTTGCACGACGCCTTCAT
GTCCGCGGACGGCAGAGGAATCTGCCTGGTCATGAGCTACTGCGAGTCGG
GCGACCTGGGGCGCGCGATTAAGGGGGCGGGCGCTCAGCCGTTTGGAGAA
GCCACAGTGCTCAAGTGGTTCGTGCAGGTGTGCATGGGGGTGCAGCACAT
GCACGCCAACCAGATGCTGCACAGGGACCTCAAGCCCTGCAACCTCTTCC
TGGGGGAGGGCGGCCTCCTCGTGCGCGTGGGCGACTTCGGCCTGGCCAAG
ATGCTCACGGGTGCGCACGAAACCGCCACCTCGGAGGTCGGCACCCCCTA
CTACACGTCCCCCGAGATGGTCCTCAGCCAGCCGTACTCCTTCCCGAGCG
ACGTCTGGAGCCTCGGCGTGATCCTGTACGAGATGCTGGCGCTGGAGACG
CCGTTCCGGCTGCGCGCGCACGGCGACGTCGTCGCGCTCGTGACGGAGGT
CGTGTCGCGCGACGCGCCGCCGCTCGCGCCGCAGTACGGCGCCGAGGTGA
AGGCGCTGTGCGCGTGGATGCTGCAGAAGAGCCCCGAGCGGCGACCCGAC
ATGGCCACGGTGCTGGCCATGCCGCTCATGCGCAAGCACGTGCGGACGTT
CGTCAAGGGGTGA
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