mRNA_217 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157677
Unique NamemRNA_217
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A835YYE7_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE7_9STRA)

HSP 1 Score: 504 bits (1297), Expect = 2.340e-180
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD
Sbjct:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 252
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A836CG78_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG78_9STRA)

HSP 1 Score: 426 bits (1094), Expect = 2.040e-149
Identity = 206/252 (81.75%), Postives = 231/252 (91.67%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLPP APPAMHFINAKGS+VP+EFAIAAR NPD+IPQMAET KE + L +EALARQYV+IVDMSGSMA RDG+GTRWDSAR AVEKMVDTIF YDVDHTVPLYLFDS+VTF+GELT  SQVKAVFKEFGPRG+TGLG ALREAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE +V RVLQEFADP++GY+ NHTQ+A+SF+Q+GDDA ASAFL++LDD ITPDICDF +DDIL+Q GGLD LL++AIFD
Sbjct:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A835ZEJ5_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ5_9STRA)

HSP 1 Score: 363 bits (932), Expect = 9.890e-125
Identity = 179/253 (70.75%), Postives = 208/253 (82.21%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRG-TRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLPP APP+  F+NA+GS VPKE+A+ AR+NPD+I  MAET KE  DL +EAL RQYV+IVD SGSM+  DG G TRWDSA  A+EKMVDTIF+YDVDH VPLYLFDS+V FVGELTSP+QV+ +FKEF PRGSTGL  AL EAL TYAGTKRPNYE+VPGTTFIVLLDGGADDE  V R ++ FADP + +++NHTQ+A+SF+QIGDD  A  FLKRLDD   PDICD  KDDIL Q+GGLD LL++AIFD
Sbjct:    1 MKLPPTAPPSTMFVNAQGSDVPKEYALPARSNPDLIVTMAETPKEKMDLQKEALVRQYVLIVDRSGSMSNPDGSGRTRWDSAGAAIEKMVDTIFQYDVDHQVPLYLFDSEVIFVGELTSPAQVRQIFKEFKPRGSTGLDKALHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDEEAVLRTIKYFADPANRFIANHTQIAISFVQIGDDPNAERFLKRLDDTSDPDICDTKKDDILYQAGGLDRLLFDAIFD 253
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A836CHH8_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH8_9STRA)

HSP 1 Score: 360 bits (923), Expect = 2.240e-123
Identity = 176/252 (69.84%), Postives = 205/252 (81.35%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLP    P   F+NA+GS VP+E+AIAAR +PD I  MAETS E KDL +EALARQYV+IVD SGSMA  DGRGTRWDSAR AV KM+DTIF+YDVDHTVP+Y+FD++  F+GE+T  SQVK +F EF PRG+T L   L EA+ TYAGTKRPNY L+PGTTFIVLLDGGADDE  V R L+ FADP++GYV+NHTQ+A+SF+QIGDDAGA+ FLKRLDD I PDICD  KDD+L  SGGLD LLY+AIFD
Sbjct:    1 MKLPSAPAPRTQFVNAQGSHVPQEYAIAARADPDCIKDMAETSNELKDLQKEALARQYVIIVDRSGSMAASDGRGTRWDSARDAVAKMIDTIFKYDVDHTVPVYVFDNESVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEAIETYAGTKRPNYSLIPGTTFIVLLDGGADDEEAVMRSLRHFADPRNGYVANHTQIALSFLQIGDDAGATRFLKRLDDEIEPDICDTKKDDVLKTSGGLDQLLYDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A835Z7E0_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E0_9STRA)

HSP 1 Score: 352 bits (904), Expect = 1.740e-120
Identity = 171/252 (67.86%), Postives = 203/252 (80.56%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLPP + P+  F+NAKGS+V +E+AIAAR NPD IP MAET +E KDL +EALARQYV+IVD SGSM   DGRGT WDSAR AV +M+DT+  YD+DHTVP+Y+FD++  F+GE+T  SQVK +F EF PRG+T L   L EAL TYAGTKRPNYELVPGTTFIVLLDGGADDE  V + +  FADP++GYV+NHTQ+A+S  QIGDD  A+ FLKRLDD I PDICD  KDDILS++GGLD LLY+AIFD
Sbjct:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 252
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A835YR58_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR58_9STRA)

HSP 1 Score: 342 bits (876), Expect = 3.280e-116
Identity = 175/253 (69.17%), Postives = 200/253 (79.05%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRG-TRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLPP A  +  F+NA+GS VPKEFA+ AR+NPD+I  MAET KE   L REAL RQYV+IVD SGSMA  D  G TRWDSA VAVE MVDTIF+YD DH VPLYLFDS+VT VGELTSPSQVK VF+E+ PRGSTGL  AL EAL TYAGTKRPNYE+VPGTTFIVLLDG ADDE  V R ++ FADP + +++NHTQ+A+SF+QIGDD  A  FL  LD+   PDICD  KDDIL Q+GGLD LL++AIFD
Sbjct:    1 MKLPPAAALSTMFVNAQGSDVPKEFALPARSNPDLIATMAETPKEKTTLQREALIRQYVLIVDRSGSMAAPDRNGRTRWDSAGVAVENMVDTIFKYDNDHQVPLYLFDSEVTSVGELTSPSQVKQVFREYRPRGSTGLDKALHEALNTYAGTKRPNYEVVPGTTFIVLLDGSADDEEPVMRTIRYFADPANKFIANHTQIALSFVQIGDDPNAERFLNCLDETAEPDICDTKKDDILYQAGGLDRLLHDAIFD 253
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A835ZDC5_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC5_9STRA)

HSP 1 Score: 340 bits (873), Expect = 1.470e-115
Identity = 170/252 (67.46%), Postives = 198/252 (78.57%), Query Frame = 1 
Query:    4 KLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRG-TRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            +LPP   PA  F+NAKGS VPK++A+AAR NPD+I  MA+TS E  DL +EALARQYV+IVD S SM   DG G TRWDSAR AVE MV TIFE+D+DHTVPLY FD  V FVGELTS SQV+  F+E+ P GST L  AL EALGTYAGTKRPNYELVPGTTFIVLLDGGADDE  V R ++ FADP +GY++NHTQ+A+S +QIGDD  A  FLK LD+ + PDICD  KDDIL Q+GG+D +LY+AIFD
Sbjct:   15 QLPPAPAPATEFVNAKGSDVPKQYALAARANPDLIHTMADTSTELSDLKKEALARQYVLIVDKSTSMGWGDGAGKTRWDSARAAVETMVLTIFEHDIDHTVPLYFFDRNVDFVGELTSASQVQQAFREYSPGGSTNLDAALLEALGTYAGTKRPNYELVPGTTFIVLLDGGADDESAVLRTIRHFADPANGYIANHTQIAISLVQIGDDDVAERFLKTLDNTVDPDICDTKKDDILYQAGGIDKMLYDAIFD 266
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: A0A835YW67_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW67_9STRA)

HSP 1 Score: 340 bits (871), Expect = 1.650e-115
Identity = 173/245 (70.61%), Postives = 198/245 (80.82%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRG-TRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQL--AVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGL 726
            MKLPP APP+  F+NA+GS VPKE+A+ AR NPD+I  MAET KE  DL REAL RQYV+IV+ SGSM   DG G TRWDSA  AVEKMVDTIF+YDVDHTVPLY+FDS+V FVGELTSP+QVK VF+EFGPRGSTGL   L EAL TYAGTKRPNYE+VPGTTFIVLLDGGADDE E  R ++ FADP + +++NHTQ+  A+SF+QIGDD  A  FLKRLDD + PDI D  KDDIL Q+GGL
Sbjct:    1 MKLPPTAPPSTLFVNAQGSDVPKEYALPARANPDLIVSMAETPKEKMDLQREALDRQYVLIVERSGSMFNPDGSGKTRWDSAGAAVEKMVDTIFDYDVDHTVPLYVFDSEVIFVGELTSPAQVKQVFREFGPRGSTGLDKGLHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDE-EAVRTIRYFADPANRFIANHTQIQIAISFVQIGDDTNAERFLKRLDDTVEPDIFDTKKDDILYQAGGL 244
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: Q8QNB1_ESV1K (EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB1_ESV1K)

HSP 1 Score: 308 bits (790), Expect = 4.050e-103
Identity = 158/254 (62.20%), Postives = 189/254 (74.41%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGI--TPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLP  AP +  F NA+GSSVPKEFA+ AR NP++I QMAET  E   L +EALARQYV+++D SGSM   DG  TRW+SAR AVEK+V+  F YD DH VP+YLFD +V FVGE TS SQV  VFK + PRG+T L   L  A+  YAG KRPNYE+ PGTTFIV+LDG ADD+  V RVL++F+DP SGYV+NHTQLA+SF+QI DD GA+AFL  LD G   +PDI D  KDDILS  GG+D L ++AIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSSVPKEFALEARKNPEVISQMAETPSEKSALEKEALARQYVLLIDRSGSMGWADGSTTRWESARKAVEKLVEAAFIYDTDHRVPVYLFDDKVEFVGECTSSSQVVDVFKNYQPRGTTDLAQCLEVAMEEYAGRKRPNYEVCPGTTFIVVLDGCADDKDAVKRVLRKFSDPVSGYVANHTQLAISFLQIADDPGATAFLNELDRGFVGSPDIVDTKKDDILSLPGGIDKLFHDAIFD 254
[Close]
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Match: D8LPJ6_ECTSI (EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ6_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.340e-101
Identity = 149/254 (58.66%), Postives = 193/254 (75.98%), Query Frame = 1 
Query:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGI--TPDICDFVKDDILSQSGGLDTLLYNAIFD 756
            MKLP  AP +  F NA+GS+VPKEFA+ AR NP++I QMAE+  E +DL +EALARQYV+I+D SGSM+  DG+ TRW+SAR AVEK+V+++F+YD+D ++PLYLFD QV FVGE T+  Q+ +VF ++ PRG T L   L  A+ TY G  R N+E VPGTTF+V+LDG ADD   V  V++++ADP SG+V NHT  A+SF+QI DD GA+AFLK LDDGI  TPDICDF  D+ LS+  G+D LL++AIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSTVPKEFALEARKNPEVISQMAESPSEKRDLEKEALARQYVLIIDRSGSMSWPDGKTTRWESARKAVEKIVESVFKYDIDGSIPLYLFDDQVEFVGECTNSGQIVSVFNDYQPRGRTDLAKCLDVAMKTYLGKNRINFETVPGTTFLVILDGDADDRQAVKDVIRKYADPASGFVENHTNAAISFVQIADDPGATAFLKDLDDGIIGTPDICDFKVDNFLSEKDGVDRLLFDAIFD 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157677 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYE7_9STRA2.340e-180100.00VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CG78_9STRA2.040e-14981.75VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835ZEJ5_9STRA9.890e-12570.75VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A836CHH8_9STRA2.240e-12369.84VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z7E0_9STRA1.740e-12067.86VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YR58_9STRA3.280e-11669.17VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZDC5_9STRA1.470e-11567.46VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YW67_9STRA1.650e-11570.61VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
Q8QNB1_ESV1K4.050e-10362.20EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPJ6_ECTSI1.340e-10158.66EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:740381..741222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157677|e_gw1.3.510.1
Descriptionvon Willebrand factor, type A
COG categoryS
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,1G11R@1117|Cyanobacteria,1H7TP@1150|Oscillatoriales
Evalue7.25e-24
Seed ortholog1173022.Cri9333_2321
Hectar predicted targeting categoryother localisation
TranscriptId157999
TrackFilteredModels1
ProteinId157677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157677gene_217Tribonema minus UTEX_B_3156 geneContig_3 740381..741222 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_217_1exon_217_1Tribonema minus UTEX_B_3156 exonContig_3 740381..740521 +
exon_217_2exon_217_2Tribonema minus UTEX_B_3156 exonContig_3 740605..741222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_217CDS_217Tribonema minus UTEX_B_3156 CDSContig_3 740381..740521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157677Trimin1|157677|e_gw1.3.510.1Tribonema minus UTEX_B_3156 polypeptideContig_3 740381..741222 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_217 ID=mRNA_217|Name=jgi.p|Trimin1|157677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_3:740381..741222+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCCACCCTGTGCACCGCCCGCGATGCACTTCATCAACGCCAA
GGGCAGTAGCGTGCCGAAAGAGTTTGCCATAGCGGCTCGCACGAATCCTG
ACATGATACCGCAAATGGCGGAGACTTCAAAGGAGAGCAAGGATCTGCAC
AGAGAGGCTTTAGCGAGGCAGTACGTGGTTATTGTGGACATGTCGGGCTC
CATGGCCACCAGGGACGGCAGAGGCACGCGCTGGGACTCGGCGCGCGTCG
CAGTGGAGAAGATGGTTGACACGATTTTCGAGTACGACGTGGATCACACG
GTGCCGCTTTATCTATTCGACAGCCAAGTCACATTCGTCGGCGAACTCAC
CAGCCCATCACAGGTGAAGGCGGTGTTCAAGGAATTCGGCCCCAGAGGGA
GCACGGGCCTTGGCCCTGCTCTGCGCGAGGCTCTCGGCACGTATGCAGGC
ACCAAGCGCCCCAATTACGAACTGGTGCCCGGCACCACGTTCATCGTGCT
CTTGGACGGCGGCGCAGATGATGAAGGCGAGGTCACGAGGGTCCTGCAGG
AGTTCGCGGATCCCAAGAGCGGCTACGTCTCAAACCACACACAGCTCGCG
GTCTCCTTTATTCAAATCGGAGACGACGCAGGGGCATCGGCATTCTTGAA
GAGGCTGGACGACGGCATCACTCCGGACATTTGTGATTTTGTCAAAGATG
ATATCCTGTCTCAGTCAGGAGGGCTTGACACGCTCCTGTACAATGCCATC
TTCGATTAG
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protein sequence of jgi.p|Trimin1|157677

>Trimin1|157677|e_gw1.3.510.1 ID=Trimin1|157677|e_gw1.3.510.1|Name=jgi.p|Trimin1|157677|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLH
REALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHT
VPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAG
TKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLA
VSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAI
FD*
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mRNA from alignment at Contig_3:740381..741222+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_217 ID=mRNA_217|Name=jgi.p|Trimin1|157677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=842bp|location=Sequence derived from alignment at Contig_3:740381..741222+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCACCCTGTGCACCGCCCGCGATGCACTTCATCAACGCCAA
GGGCAGTAGCGTGCCGAAAGAGTTTGCCATAGCGGCTCGCACGAATCCTG
ACATGATACCGCAAATGGCGGAGACTTCAAAGGAGAGCAAGGTGAGGCTT
TTCACATGTCGCGTTGCATCGCTAAGCCCGCGTCATAACCACTGCGCACT
CACGTGATCGCACGCTCACCGCAGGATCTGCACAGAGAGGCTTTAGCGAG
GCAGTACGTGGTTATTGTGGACATGTCGGGCTCCATGGCCACCAGGGACG
GCAGAGGCACGCGCTGGGACTCGGCGCGCGTCGCAGTGGAGAAGATGGTT
GACACGATTTTCGAGTACGACGTGGATCACACGGTGCCGCTTTATCTATT
CGACAGCCAAGTCACATTCGTCGGCGAACTCACCAGCCCATCACAGGTGA
AGGCGGTGTTCAAGGAATTCGGCCCCAGAGGGAGCACGGGCCTTGGCCCT
GCTCTGCGCGAGGCTCTCGGCACGTATGCAGGCACCAAGCGCCCCAATTA
CGAACTGGTGCCCGGCACCACGTTCATCGTGCTCTTGGACGGCGGCGCAG
ATGATGAAGGCGAGGTCACGAGGGTCCTGCAGGAGTTCGCGGATCCCAAG
AGCGGCTACGTCTCAAACCACACACAGCTCGCGGTCTCCTTTATTCAAAT
CGGAGACGACGCAGGGGCATCGGCATTCTTGAAGAGGCTGGACGACGGCA
TCACTCCGGACATTTGTGATTTTGTCAAAGATGATATCCTGTCTCAGTCA
GGAGGGCTTGACACGCTCCTGTACAATGCCATCTTCGATTAG
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Coding sequence (CDS) from alignment at Contig_3:740381..741222+

>mRNA_217 ID=mRNA_217|Name=jgi.p|Trimin1|157677|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_3:740381..741222+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCACCCTGTGCACCGCCCGCGATGCACTTCATCAACGCCAA
GGGCAGTAGCGTGCCGAAAGAGTTTGCCATAGCGGCTCGCACGAATCCTG
ACATGATACCGCAAATGGCGGAGACTTCAAAGGAGAGCAAGGATCTGCAC
AGAGAGGCTTTAGCGAGGCAGTACGTGGTTATTGTGGACATGTCGGGCTC
CATGGCCACCAGGGACGGCAGAGGCACGCGCTGGGACTCGGCGCGCGTCG
CAGTGGAGAAGATGGTTGACACGATTTTCGAGTACGACGTGGATCACACG
GTGCCGCTTTATCTATTCGACAGCCAAGTCACATTCGTCGGCGAACTCAC
CAGCCCATCACAGGTGAAGGCGGTGTTCAAGGAATTCGGCCCCAGAGGGA
GCACGGGCCTTGGCCCTGCTCTGCGCGAGGCTCTCGGCACGTATGCAGGC
ACCAAGCGCCCCAATTACGAACTGGTGCCCGGCACCACGTTCATCGTGCT
CTTGGACGGCGGCGCAGATGATGAAGGCGAGGTCACGAGGGTCCTGCAGG
AGTTCGCGGATCCCAAGAGCGGCTACGTCTCAAACCACACACAGCTCGCG
GTCTCCTTTATTCAAATCGGAGACGACGCAGGGGCATCGGCATTCTTGAA
GAGGCTGGACGACGGCATCACTCCGGACATTTGTGATTTTGTCAAAGATG
ATATCCTGTCTCAGTCAGGAGGGCTTGACACGCTCCTGTACAATGCCATC
TTCGATTAG
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