mRNA_2149 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835YXX0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX0_9STRA) HSP 1 Score: 374 bits (959), Expect = 2.440e-131 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 Query: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK Sbjct: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 177
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835Z413_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z413_9STRA) HSP 1 Score: 352 bits (904), Expect = 1.730e-114 Identity = 166/177 (93.79%), Postives = 171/177 (96.61%), Query Frame = 1 Query: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 F+KDWMMDED+RT+D LDFLPPPL CPSNVYNCYYG AVARLPAAAPTDVEDLHGHVLPFM DIMCNGNDAVYQYV KDLANRVQQPGKKT VALSFLGDEGVGKNFVVN+IYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGE+K Sbjct: 367 FMKDWMMDEDIRTFDYLDFLPPPLTCPSNVYNCYYGFAVARLPAAAPTDVEDLHGHVLPFMHDIMCNGNDAVYQYVLKDLANRVQQPGKKTTVALSFLGDEGVGKNFVVNYIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGELK 543
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835Z558_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z558_9STRA) HSP 1 Score: 314 bits (805), Expect = 1.540e-100 Identity = 145/177 (81.92%), Postives = 161/177 (90.96%), Query Frame = 1 Query: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 F+ WM D+++RTYD LDFLPPPL CPSNVYNC+YGLAVARLP AAPTDVEDLH HVLPF+RDI+C+ N+AVY+Y KDLANRV+QPGKKTNVALSFLGDEGVGKNF V HIY+ L+G+SMC+KAADLEHSLFGRFSCPGRN LLVCLDEIRPAEMARYYDQLMDLITA+ QGEIK Sbjct: 367 FMATWMKDQNIRTYDYLDFLPPPLHCPSNVYNCFYGLAVARLPPAAPTDVEDLHAHVLPFLRDIVCDANEAVYRYALKDLANRVKQPGKKTNVALSFLGDEGVGKNFTVTHIYIALLGQSMCAKAADLEHSLFGRFSCPGRNLLLVCLDEIRPAEMARYYDQLMDLITADRGQGEIK 543
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835YWC3_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC3_9STRA) HSP 1 Score: 124 bits (311), Expect = 6.400e-32 Identity = 65/173 (37.57%), Postives = 98/173 (56.65%), Query Frame = 1 Query: 13 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 W+ DE + TY+ F+PPP +CP VYN + G V + A D L HVLPF+++I+CN Y+ LA Q PG KT A+ LG+EGVGK+ H+ ++G + + DL++ FGRFS N ++ +E+ P ++ +Y++LMDLIT+ S+ E K Sbjct: 14 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKY-TATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKS-KFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQK 184
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A8J9RR73_9CHLO (Probable helicase L207/L206 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR73_9CHLO) HSP 1 Score: 95.1 bits (235), Expect = 1.760e-19 Identity = 61/179 (34.08%), Postives = 90/179 (50.28%), Query Frame = 1 Query: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPT-DVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIY-VPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 F W+ D RTY+ +D LPPPL+CPS+VYN Y GL +LPA V+ + H+L D +A +Y+ +A+ VQ+PG+ V + +GVGKN + + ++G + +A E FGRF N LL DE+ +M R + + ITAE+ E K Sbjct: 687 FFDVWLKDATKRTYERVDMLPPPLECPSDVYNTYRGLRAEKLPALREARSVQIVLDHILMLAGDT----GEAGREYLLNYMAHMVQKPGELPKVGILMQSKQGVGKNLLFEELLGKKILGAGLMHCSAQSE-DYFGRFDNAAVNKLLCIHDEVVGRDMGRTAGLIKESITAELQGLEEK 860
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835XPD0_9CHLO (DUF5906 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XPD0_9CHLO) HSP 1 Score: 94.7 bits (234), Expect = 2.230e-19 Identity = 58/178 (32.58%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAA-APTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 F+K W+ D +RTYD ++ PPPL P++ +N + V R P D + + I+ A YV A Q+P KKT +AL F G+EG GKN N I+ +MG + + L+G+F+ RN +L+C++E E D L D+IT+E E K Sbjct: 317 FLKTWLRDATIRTYDTMNVYPPPLTAPADEFNLWTRFDVERYHVTHLPVDTQSPGVQAIIEHLHILLGRTSAHTNYVLDWSAQLFQEPSKKTGIALLFKGEEGSGKNIWTN-IFKLMMGSDKFLETSKPSTVLYGQFTSARRNKVLICINEANGKENHANNDVLKDMITSETFVCEAK 493
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A250XQS3_9CHLO (DUF5906 domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQS3_9CHLO) HSP 1 Score: 72.8 bits (177), Expect = 9.280e-12 Identity = 53/172 (30.81%), Postives = 81/172 (47.09%), Query Frame = 1 Query: 1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIM-CNGNDA-VYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAE 510 FI WM D +R + + PPP V+N + VA + D D + +V F + G DA V +YV A VQQPGKKT +AL G++GVGKN N + ++G + A +LFGRF+ +L+ ++E + + + D+IT + Sbjct: 474 FIARWMRDNKLRRFLDISLAPPPKTTTPEVFNLWTPFNVAMV-----DDNLDDNAYVKAFQEFVTKLLGRDAPVIKYVLDWCAQMVQQPGKKTGIALILKGEQGVGKNVFTNALRA-VVGADKFLQTATPATTLFGRFTNLREGRILIVINESNGMDNFAASETIKDMITCD 639
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A3B9BRW0_9RHOB (DUF5906 domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A3B9BRW0_9RHOB) HSP 1 Score: 69.3 bits (168), Expect = 1.520e-10 Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 1 Query: 13 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDE 450 W+ R+Y + F P + VYN Y GL+V P D H+ RDI+C+G+D +++YV+ +AN +Q P + VAL+ G GVGK V+H ++ L G + + H L G F+ ++ LLV DE Sbjct: 426 WLRHPKRRSYGAIVFAPN-MDLSKEVYNSYRGLSVEPKPG----DCSLYFQHI----RDIICSGDDDLFEYVKNWMANAIQNPAARPGVALALRGSMGVGKGAFVSH-FLSLFGVHAL-QVSQTSH-LVGHFNSHLQDKLLVFADE 559
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: UPI001A94E47B (DUF5906 domain-containing protein n=1 Tax=Shewanella cyperi TaxID=2814292 RepID=UPI001A94E47B) HSP 1 Score: 67.8 bits (164), Expect = 4.490e-10 Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 1 Query: 55 FLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531 F P P +CP +V+N Y GLA+ + +E F+RD++C+GN ++QY+ LA+ V++P +K +VAL EG GK + + ++G+ + + +E + GRF+ N LLV DE+ + R ++L LI+ + E K Sbjct: 109 FYPDPEKCPDSVFNMYRGLALTPVTGDCTPFLE--------FLRDVICDGNLRLFQYLICWLAHLVRRPDEKPSVALLLKSVEGTGKGTLFKPLKA-ILGE-LAVQVNGIEQ-ITGRFNSLVANRLLVFADEVEITDTRRV-NRLKGLISEHSATMEYK 255
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A1W6CNN0_9PROT (Prim-Pol domain-containing protein n=1 Tax=Magnetospirillum sp. ME-1 TaxID=1639348 RepID=A0A1W6CNN0_9PROT) HSP 1 Score: 61.2 bits (147), Expect = 9.210e-8 Identity = 43/146 (29.45%), Postives = 67/146 (45.89%), Query Frame = 1 Query: 13 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDE 450 W+ R YD + F P P + YN + G+AV P + LH D++C G+ +Y+Y+ +A VQ+P VA+ G++G GK F +H+ L G+ A+ H L G F+ + +LV DE Sbjct: 353 WLKWPGRRQYDRVIFAPGK-NLPVSTYNLWQGMAVEPAPGNCTKFLALLH--------DVICGGDQGLYEYLIGWIARAVQRPWDPGEVAVVLRGEKGTGKTFFADHVG-ELFGEHYVQLASS--HHLVGNFNAHLESAILVFADE 486 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2149 ID=mRNA_2149|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_6:875563..876093- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTCATCAAGGACTGGATGATGGACGAGGATGTACGAACGTACGACTGCCTback to top protein sequence of jgi.p|Trimin1|147562 >Trimin1|147562|gw1.6.232.1 ID=Trimin1|147562|gw1.6.232.1|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVback to top mRNA from alignment at Contig_6:875563..876093- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_6:875563..876093- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:875563..876093- >mRNA_2149 ID=mRNA_2149|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_6:875563..876093- (Tribonema minus UTEX_B_3156 )back to top |