mRNA_2149 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147562
Unique NamemRNA_2149
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835YXX0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX0_9STRA)

HSP 1 Score: 374 bits (959), Expect = 2.440e-131
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1
Query:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK
Sbjct:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 177          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835Z413_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z413_9STRA)

HSP 1 Score: 352 bits (904), Expect = 1.730e-114
Identity = 166/177 (93.79%), Postives = 171/177 (96.61%), Query Frame = 1
Query:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            F+KDWMMDED+RT+D LDFLPPPL CPSNVYNCYYG AVARLPAAAPTDVEDLHGHVLPFM DIMCNGNDAVYQYV KDLANRVQQPGKKT VALSFLGDEGVGKNFVVN+IYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGE+K
Sbjct:  367 FMKDWMMDEDIRTFDYLDFLPPPLTCPSNVYNCYYGFAVARLPAAAPTDVEDLHGHVLPFMHDIMCNGNDAVYQYVLKDLANRVQQPGKKTTVALSFLGDEGVGKNFVVNYIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGELK 543          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835Z558_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z558_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.540e-100
Identity = 145/177 (81.92%), Postives = 161/177 (90.96%), Query Frame = 1
Query:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            F+  WM D+++RTYD LDFLPPPL CPSNVYNC+YGLAVARLP AAPTDVEDLH HVLPF+RDI+C+ N+AVY+Y  KDLANRV+QPGKKTNVALSFLGDEGVGKNF V HIY+ L+G+SMC+KAADLEHSLFGRFSCPGRN LLVCLDEIRPAEMARYYDQLMDLITA+  QGEIK
Sbjct:  367 FMATWMKDQNIRTYDYLDFLPPPLHCPSNVYNCFYGLAVARLPPAAPTDVEDLHAHVLPFLRDIVCDANEAVYRYALKDLANRVKQPGKKTNVALSFLGDEGVGKNFTVTHIYIALLGQSMCAKAADLEHSLFGRFSCPGRNLLLVCLDEIRPAEMARYYDQLMDLITADRGQGEIK 543          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835YWC3_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.400e-32
Identity = 65/173 (37.57%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   13 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            W+ DE + TY+   F+PPP +CP  VYN + G  V +   A   D   L  HVLPF+++I+CN       Y+   LA   Q PG KT  A+  LG+EGVGK+    H+   ++G  +  +  DL++  FGRFS    N ++   +E+ P ++  +Y++LMDLIT+  S+ E K
Sbjct:   14 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKY-TATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKS-KFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQK 184          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A8J9RR73_9CHLO (Probable helicase L207/L206 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR73_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 1.760e-19
Identity = 61/179 (34.08%), Postives = 90/179 (50.28%), Query Frame = 1
Query:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPT-DVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIY-VPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            F   W+ D   RTY+ +D LPPPL+CPS+VYN Y GL   +LPA      V+ +  H+L    D      +A  +Y+   +A+ VQ+PG+   V +     +GVGKN +   +    ++G  +   +A  E   FGRF     N LL   DE+   +M R    + + ITAE+   E K
Sbjct:  687 FFDVWLKDATKRTYERVDMLPPPLECPSDVYNTYRGLRAEKLPALREARSVQIVLDHILMLAGDT----GEAGREYLLNYMAHMVQKPGELPKVGILMQSKQGVGKNLLFEELLGKKILGAGLMHCSAQSE-DYFGRFDNAAVNKLLCIHDEVVGRDMGRTAGLIKESITAELQGLEEK 860          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A835XPD0_9CHLO (DUF5906 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XPD0_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 2.230e-19
Identity = 58/178 (32.58%), Postives = 86/178 (48.31%), Query Frame = 1
Query:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAA-APTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            F+K W+ D  +RTYD ++  PPPL  P++ +N +    V R      P D +      +     I+     A   YV    A   Q+P KKT +AL F G+EG GKN   N I+  +MG     + +     L+G+F+   RN +L+C++E    E     D L D+IT+E    E K
Sbjct:  317 FLKTWLRDATIRTYDTMNVYPPPLTAPADEFNLWTRFDVERYHVTHLPVDTQSPGVQAIIEHLHILLGRTSAHTNYVLDWSAQLFQEPSKKTGIALLFKGEEGSGKNIWTN-IFKLMMGSDKFLETSKPSTVLYGQFTSARRNKVLICINEANGKENHANNDVLKDMITSETFVCEAK 493          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A250XQS3_9CHLO (DUF5906 domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQS3_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 9.280e-12
Identity = 53/172 (30.81%), Postives = 81/172 (47.09%), Query Frame = 1
Query:    1 FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIM-CNGNDA-VYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAE 510
            FI  WM D  +R +  +   PPP      V+N +    VA +      D  D + +V  F   +    G DA V +YV    A  VQQPGKKT +AL   G++GVGKN   N +   ++G     + A    +LFGRF+      +L+ ++E    +     + + D+IT +
Sbjct:  474 FIARWMRDNKLRRFLDISLAPPPKTTTPEVFNLWTPFNVAMV-----DDNLDDNAYVKAFQEFVTKLLGRDAPVIKYVLDWCAQMVQQPGKKTGIALILKGEQGVGKNVFTNALRA-VVGADKFLQTATPATTLFGRFTNLREGRILIVINESNGMDNFAASETIKDMITCD 639          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A3B9BRW0_9RHOB (DUF5906 domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A3B9BRW0_9RHOB)

HSP 1 Score: 69.3 bits (168), Expect = 1.520e-10
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   13 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDE 450
            W+     R+Y  + F P  +     VYN Y GL+V   P     D      H+    RDI+C+G+D +++YV+  +AN +Q P  +  VAL+  G  GVGK   V+H ++ L G     + +   H L G F+   ++ LLV  DE
Sbjct:  426 WLRHPKRRSYGAIVFAPN-MDLSKEVYNSYRGLSVEPKPG----DCSLYFQHI----RDIICSGDDDLFEYVKNWMANAIQNPAARPGVALALRGSMGVGKGAFVSH-FLSLFGVHAL-QVSQTSH-LVGHFNSHLQDKLLVFADE 559          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: UPI001A94E47B (DUF5906 domain-containing protein n=1 Tax=Shewanella cyperi TaxID=2814292 RepID=UPI001A94E47B)

HSP 1 Score: 67.8 bits (164), Expect = 4.490e-10
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   55 FLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 531
            F P P +CP +V+N Y GLA+  +       +E        F+RD++C+GN  ++QY+   LA+ V++P +K +VAL     EG GK  +   +   ++G+ +  +   +E  + GRF+    N LLV  DE+   +  R  ++L  LI+   +  E K
Sbjct:  109 FYPDPEKCPDSVFNMYRGLALTPVTGDCTPFLE--------FLRDVICDGNLRLFQYLICWLAHLVRRPDEKPSVALLLKSVEGTGKGTLFKPLKA-ILGE-LAVQVNGIEQ-ITGRFNSLVANRLLVFADEVEITDTRRV-NRLKGLISEHSATMEYK 255          
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Match: A0A1W6CNN0_9PROT (Prim-Pol domain-containing protein n=1 Tax=Magnetospirillum sp. ME-1 TaxID=1639348 RepID=A0A1W6CNN0_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 9.210e-8
Identity = 43/146 (29.45%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   13 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDE 450
            W+     R YD + F P     P + YN + G+AV   P      +  LH        D++C G+  +Y+Y+   +A  VQ+P     VA+   G++G GK F  +H+   L G+     A+   H L G F+    + +LV  DE
Sbjct:  353 WLKWPGRRQYDRVIFAPGK-NLPVSTYNLWQGMAVEPAPGNCTKFLALLH--------DVICGGDQGLYEYLIGWIARAVQRPWDPGEVAVVLRGEKGTGKTFFADHVG-ELFGEHYVQLASS--HHLVGNFNAHLESAILVFADE 486          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147562 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YXX0_9STRA2.440e-131100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z413_9STRA1.730e-11493.79DUF5906 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z558_9STRA1.540e-10081.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWC3_9STRA6.400e-3237.57DUF5906 domain-containing protein n=1 Tax=Tribonem... [more]
A0A8J9RR73_9CHLO1.760e-1934.08Probable helicase L207/L206 at N-terminal half n=1... [more]
A0A835XPD0_9CHLO2.230e-1932.58DUF5906 domain-containing protein n=1 Tax=Edaphoch... [more]
A0A250XQS3_9CHLO9.280e-1230.81DUF5906 domain-containing protein (Fragment) n=1 T... [more]
A0A3B9BRW0_9RHOB1.520e-1032.88DUF5906 domain-containing protein n=1 Tax=Rhodobac... [more]
UPI001A94E47B4.490e-1030.82DUF5906 domain-containing protein n=1 Tax=Shewanel... [more]
A0A1W6CNN0_9PROT9.210e-829.45Prim-Pol domain-containing protein n=1 Tax=Magneto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:875563..876093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147562|gw1.6.232.1
DescriptionEncoded by
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4983@1|root,2S6HH@2759|Eukaryota
Evalue8.32e-11
Seed ortholog242159.ABO99768
Hectar predicted targeting categoryother localisation
TranscriptId147884
TrackFilteredModels1
ProteinId147562
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147562gene_2149Tribonema minus UTEX_B_3156 geneContig_6 875563..876093 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2149_1exon_2149_1Tribonema minus UTEX_B_3156 exonContig_6 875563..876093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2149CDS_2149Tribonema minus UTEX_B_3156 CDSContig_6 875563..876093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147562Trimin1|147562|gw1.6.232.1Tribonema minus UTEX_B_3156 polypeptideContig_6 875563..876093 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_6:875563..876093- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCATCAAGGACTGGATGATGGACGAGGATGTACGAACGTACGACTGCCT
AGATTTTCTGCCGCCCCCTCTCCAATGCCCGAGCAACGTGTACAACTGCT
ACTACGGATTGGCGGTCGCGCGGCTGCCGGCGGCGGCGCCGACAGACGTC
GAGGACCTGCACGGGCACGTGCTGCCATTCATGCGCGACATCATGTGTAA
CGGCAACGACGCGGTGTACCAGTACGTACAGAAAGATCTCGCAAACAGAG
TGCAGCAGCCGGGCAAGAAGACGAACGTTGCTCTTTCATTTCTGGGCGAT
GAAGGGGTGGGCAAGAACTTCGTCGTGAATCACATTTACGTCCCGCTGAT
GGGCAAGTCGATGTGCTCAAAGGCCGCAGACCTCGAGCACAGTCTTTTCG
GGAGGTTCTCATGTCCCGGCCGCAACAATCTTCTGGTCTGCCTCGACGAG
ATCAGACCCGCCGAGATGGCGCGCTACTACGATCAATTGATGGACTTGAT
TACCGCGGAGATGAGTCAGGGCGAGATCAAA
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protein sequence of jgi.p|Trimin1|147562

>Trimin1|147562|gw1.6.232.1 ID=Trimin1|147562|gw1.6.232.1|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
FIKDWMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDV
EDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGD
EGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDE
IRPAEMARYYDQLMDLITAEMSQGEIK
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mRNA from alignment at Contig_6:875563..876093-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_6:875563..876093- (Tribonema minus UTEX_B_3156 )
TTCATCAAGGACTGGATGATGGACGAGGATGTACGAACGTACGACTGCCT AGATTTTCTGCCGCCCCCTCTCCAATGCCCGAGCAACGTGTACAACTGCT ACTACGGATTGGCGGTCGCGCGGCTGCCGGCGGCGGCGCCGACAGACGTC GAGGACCTGCACGGGCACGTGCTGCCATTCATGCGCGACATCATGTGTAA CGGCAACGACGCGGTGTACCAGTACGTACAGAAAGATCTCGCAAACAGAG TGCAGCAGCCGGGCAAGAAGACGAACGTTGCTCTTTCATTTCTGGGCGAT GAAGGGGTGGGCAAGAACTTCGTCGTGAATCACATTTACGTCCCGCTGAT GGGCAAGTCGATGTGCTCAAAGGCCGCAGACCTCGAGCACAGTCTTTTCG GGAGGTTCTCATGTCCCGGCCGCAACAATCTTCTGGTCTGCCTCGACGAG ATCAGACCCGCCGAGATGGCGCGCTACTACGATCAATTGATGGACTTGAT TACCGCGGAGATGAGTCAGGGCGAGATCAAA
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Coding sequence (CDS) from alignment at Contig_6:875563..876093-

>mRNA_2149 ID=mRNA_2149|Name=jgi.p|Trimin1|147562|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_6:875563..876093- (Tribonema minus UTEX_B_3156 )
TTCATCAAGGACTGGATGATGGACGAGGATGTACGAACGTACGACTGCCT
AGATTTTCTGCCGCCCCCTCTCCAATGCCCGAGCAACGTGTACAACTGCT
ACTACGGATTGGCGGTCGCGCGGCTGCCGGCGGCGGCGCCGACAGACGTC
GAGGACCTGCACGGGCACGTGCTGCCATTCATGCGCGACATCATGTGTAA
CGGCAACGACGCGGTGTACCAGTACGTACAGAAAGATCTCGCAAACAGAG
TGCAGCAGCCGGGCAAGAAGACGAACGTTGCTCTTTCATTTCTGGGCGAT
GAAGGGGTGGGCAAGAACTTCGTCGTGAATCACATTTACGTCCCGCTGAT
GGGCAAGTCGATGTGCTCAAAGGCCGCAGACCTCGAGCACAGTCTTTTCG
GGAGGTTCTCATGTCCCGGCCGCAACAATCTTCTGGTCTGCCTCGACGAG
ATCAGACCCGCCGAGATGGCGCGCTACTACGATCAATTGATGGACTTGAT
TACCGCGGAGATGAGTCAGGGCGAGATCAAA
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