mRNA_2141 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138734
Unique NamemRNA_2141
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A835YQ51_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ51_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.930e-18
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1
Query:    1 DCNKTFSSKGGMYKHVKAVHLKIKDVICTHGGCG 102
            DCNKTFSSKGGMYKHVKAVHLKIKDVICTHGGCG
Sbjct:    1 DCNKTFSSKGGMYKHVKAVHLKIKDVICTHGGCG 34          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A835ZA48_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA48_9STRA)

HSP 1 Score: 355 bits (910), Expect = 2.280e-123
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1
Query:    1 CPAGAYCPAGSSAATPCDVXXXXXXXXXXXXXXXXXXXXXXXXTSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSVAVSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYCPGG 576
            CPAGAYCPAGSSAATPCDVXXXXXXXXXXXXXXXXXXXXXXXXTSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSVAVSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYCPGG
Sbjct:    1 CPAGAYCPAGSSAATPCDVXXXXXXXXXXXXXXXXXXXXXXXXTSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSVAVSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYCPGG 192          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A7S3JSV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSV9_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.810e-49
Identity = 77/147 (52.38%), Postives = 95/147 (64.63%), Query Frame = 1
Query:  130 TSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSVA-VSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYC 567
            T+   M + G  W+   + AG CFNGT C +A       TRAPDLLRD CP G+YCP  TP  + CPAGT  P+ G D  +DC +TP G+Y++A  S++   C PGYYCP+ STG RE PCP RFY  D+G  S  DC+LCTSGGYC
Sbjct:    8 TTTDEMYSLGGDWNSAEDVAGQCFNGTYCPSA------MTRAPDLLRDACPTGYYCPTATPLPIACPAGTYNPVTGADDIDDCLETPKGFYTIAGASNYTQQCSPGYYCPVGSTGSREVPCPERFYLPDYGGGSLLDCALCTSGGYC 148          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 8.120e-41
Identity = 77/144 (53.47%), Postives = 90/144 (62.50%), Query Frame = 1
Query:  130 TSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAE-DCQDTPAGYYSVAVS-DWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTS 555
            TSA  MLTG  SW     ++G CFNGT C A      G TRAPDL RD CP GHYCPAG  +  PCP+GT  P  G D  E DC  +  GYY++  S +  G C+PGYYCP  STGP++ PCP RFYRS  GA S+ DC+ C S
Sbjct: 1539 TSAVDMLTGVGSWDLSSNSSGMCFNGTYCAA------GMTRAPDLARDACPAGHYCPAGVASPYPCPSGTYNPHTGRDDLEEDCLISLEGYYTIEASTNMTGSCDPGYYCPAGSTGPQQVPCPERFYRSSSGAGSQDDCAYCVS 1676          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A7S3JP84_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JP84_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.690e-38
Identity = 73/148 (49.32%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  130 TSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSVA-VSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYCP 570
            T+ +AML  G  W+   + AG CFNGT C        G TRAPDL RD CP G YCP    + L CPAGT  P  G    EDC +TPAGYY++A  S+  GLC PGYYCP  ST      CPA  Y   +G    ++C+LC SGGYCP
Sbjct:  284 TNMSAMLNNGGYWTNSDDLAGRCFNGTFCPT------GMTRAPDLTRDACPSGSYCPIAIASPLNCPAGTYNPFTGFGRVEDCLETPAGYYTIAGSSNITGLCSPGYYCPAGSTTSMARSCPATTYNPYYGRMEVSECALCVSGGYCP 425          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: F0YNW2_AURAN (TNFR-Cys domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNW2_AURAN)

HSP 1 Score: 146 bits (369), Expect = 3.320e-37
Identity = 73/146 (50.00%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  130 TSATAMLTGGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSV-AVSDWGGL-CEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGG 561
            T+   MLT G  W+   +AAG CFNGT C        G  RAPDL RD CP G+YCP  T    PCPAGT     GMD  EDC  TP GYYS+ A S++    C PG++CP  STGP + PCP RFY  D+G  +   C LC SGG
Sbjct: 1298 TATADMLTLGGDWAAADDAAGMCFNGTYCPE------GMARAPDLYRDACPAGYYCPTATAKPQPCPAGTFNRNTGMDAREDCVITPQGYYSISATSNFTDYKCAPGHWCPTGSTGPYQVPCPERFYNPDYGGGAITACGLCKSGG 1437          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A2T7NFW9_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NFW9_POMCA)

HSP 1 Score: 99.4 bits (246), Expect = 1.060e-20
Identity = 53/123 (43.09%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  211 LCVAADDADYGYTRAPDLLRDPCPVGHYCPAGT--PAALPCPAGTLQPLVGMDGAEDC-QDTPAGY-YSVAVSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYC 567
            +C A  +   G TR PDL+RD C +G+YCPAG   P   PCP GT     G     DC Q TP  Y Y   +S   G C  GYYCP+ +      PCP  FYR+     S  DC+ C SG YC
Sbjct: 1704 VCPAGLECPAGMTRQPDLIRDRCRIGYYCPAGNVQPLPQPCPGGTYNAETGRMRVSDCVQCTPGKYCYPSGLSQPAGDCPGGYYCPLGTAESNSFPCPIGFYRNGSAKESFEDCTECISGYYC 1826          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: UPI000D730558 (uncharacterized protein LOC112553744 isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D730558)

HSP 1 Score: 99.4 bits (246), Expect = 1.060e-20
Identity = 53/123 (43.09%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  211 LCVAADDADYGYTRAPDLLRDPCPVGHYCPAGT--PAALPCPAGTLQPLVGMDGAEDC-QDTPAGY-YSVAVSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYC 567
            +C A  +   G TR PDL+RD C +G+YCPAG   P   PCP GT     G     DC Q TP  Y Y   +S   G C  GYYCP+ +      PCP  FYR+     S  DC+ C SG YC
Sbjct: 1704 VCPAGLECPAGMTRQPDLIRDRCRIGYYCPAGNVQPLPQPCPGGTYNAETGRMRVSDCVQCTPGKYCYPSGLSQPAGDCPGGYYCPLGTAESNSFPCPIGFYRNGSAKESFEDCTECISGYYC 1826          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A8J9ZZB1_BRALA (CEP250 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZZB1_BRALA)

HSP 1 Score: 86.3 bits (212), Expect = 3.700e-16
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  196 CFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGT--PAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSV-AVSDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYCP 570
            C  G  C++      G  +AP+    PC  GHYCPAGT  P   PC AGT   L  ++ +++C     GYY +   ++  GLC+ G++CP  +    E PC    Y ++ G     DC  C  G YCP
Sbjct: 2288 CPAGVACLSGTG---GVNKAPE----PCAAGHYCPAGTQFPMQFPCVAGTYSNLTNLEHSDECYVCTRGYYCLQGATEPSGLCDTGHWCPAGTATATENPCHGGSYSNNQGNTRWEDCEDCPEGAYCP 2408          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: F2TZP5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZP5_SALR5)

HSP 1 Score: 84.7 bits (208), Expect = 1.250e-15
Identity = 64/197 (32.49%), Postives = 83/197 (42.13%), Query Frame = 1
Query:    1 CPAGAYCPAGSSAATPCDVXXXXXXXXXXXXXXXXXXXXXXXXTSATAMLT---GGASWSRVGEAAGACFNGTLCVAADDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSVAV-----SDWGGLCEPGYYCPINSTGPRETPCPARFYRSDWGAASEADCSLCTSGGYC 567
            CPAG YCPAGSS    C                          T+ +A L    G A  S+       C  G  C   ++     T    L    CP G+YCP GTP  + CP+G+ Q     DG  DC+  PA Y   A      + +   C  GYYCP  +   +E PCPA  + +  G   E+DC+ CT+G YC
Sbjct: 2621 CPAGYYCPAGSSTPIACAAGTFSNVTMA---------------TNVSACLPCPIGHACVSQATTDPEPCAAGYYCN--EEGQTSTTPGSKL----CPPGYYCPEGTPDRVSCPSGSYQ---DEDGQADCKQCPASYVCNATVAPVTNPYLVACPAGYYCPAGTRFEQEYPCPAGTFSNALGLDEESDCTPCTAGMYC 2793          
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Match: A0A8B7Z5H0_ACAPL (zonadhesin-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z5H0_ACAPL)

HSP 1 Score: 83.2 bits (204), Expect = 4.240e-15
Identity = 55/157 (35.03%), Postives = 65/157 (41.40%), Query Frame = 1
Query:  196 CFNGTLCVAA------DDADYGYTRAPDLLRDPCPVGHYCPAGTPAALPCPAGTLQPLVGMDGAEDCQDTPAGYYSV--AVSDWGGLCEPGYYCPINSTGP----------------------RETPCPARFYRSDWGAASEADCSLCTSGGYCPGG 576
            CF G  CV        D   YGY          CP GHYCPAGTPA +PCP GT  P +G D   DC+    GYY      S+  G C  GYYC  N++ P                      R  PC    Y ++ GAA    C +C +G  C  G
Sbjct: 2826 CFAGFYCVLGASSGNPDGESYGYK---------CPEGHYCPAGTPAPVPCPVGTYNPDIGKDDQSDCRACDGGYYCQYDGQSNVTGQCYEGYYCAGNASIPNPEDGITGDICPVGHYCPEGIDRPLPCLNATYMNETGAAV---CLVCPAGNQCVSG 2970          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQ51_9STRA9.930e-18100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
BLAST of jgi.p|Trimin1|138734 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA48_9STRA2.280e-123100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3JSV9_9STRA3.810e-4952.38Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
D8LR26_ECTSI8.120e-4153.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3JP84_9STRA2.690e-3849.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YNW2_AURAN3.320e-3750.00TNFR-Cys domain-containing protein n=1 Tax=Aureoco... [more]
A0A2T7NFW9_POMCA1.060e-2043.09Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
UPI000D7305581.060e-2043.09uncharacterized protein LOC112553744 isoform X1 n=... [more]
A0A8J9ZZB1_BRALA3.700e-1635.16CEP250 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
F2TZP5_SALR51.250e-1532.49Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8B7Z5H0_ACAPL4.240e-1535.03zonadhesin-like n=1 Tax=Acanthaster planci TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:850464..850709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138734|gw1.6.103.1
BRITEko00000,ko03000,ko03021
KEGG koko:K09191
GOsGO:0000182,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006355,GO:0008097,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019843,GO:0022613,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080084,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141
Descriptiontranscription factor
COG categoryJKL
Max annot lvl35493|Streptophyta
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,37JY1@33090|Viridiplantae,3GDFH@35493|Streptophyta
Evalue5.36e-05
Seed ortholog161934.XP_010673198.1
Hectar predicted targeting categoryother localisation
TranscriptId139056
TrackFilteredModels1
ProteinId138734
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138734gene_2141Tribonema minus UTEX_B_3156 geneContig_6 850464..850709 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2141_1exon_2141_1Tribonema minus UTEX_B_3156 exonContig_6 850464..850709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2141CDS_2141Tribonema minus UTEX_B_3156 CDSContig_6 850464..850709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138734Trimin1|138734|gw1.6.103.1Tribonema minus UTEX_B_3156 polypeptideContig_6 850464..850709 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2141 ID=mRNA_2141|Name=jgi.p|Trimin1|138734|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_6:850464..850709- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACTGCAACAAGACGTTCAGCTCTAAGGGAGGCATGTACAAGCACGTCAA
GGCGGTGCATCTGAAGATCAAGGACGTCATCTGCACCCATGGAGGCTGCG
GCCAGATGTTTTCACGTCATGGGCACATGCGGCACCACGTCAATGTGGTG
CACTTGGGTATCAAGGCCGTGCCGTGCAGTCACGAAGGCTGCAAGAAGAC
GTTCACGACCAAGCAAATGATCAAGAAGCACGTCAAAGCGGTGCAT
back to top

protein sequence of jgi.p|Trimin1|138734

>Trimin1|138734|gw1.6.103.1 ID=Trimin1|138734|gw1.6.103.1|Name=jgi.p|Trimin1|138734|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
DCNKTFSSKGGMYKHVKAVHLKIKDVICTHGGCGQMFSRHGHMRHHVNVV
HLGIKAVPCSHEGCKKTFTTKQMIKKHVKAVH
back to top

mRNA from alignment at Contig_6:850464..850709-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2141 ID=mRNA_2141|Name=jgi.p|Trimin1|138734|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_6:850464..850709- (Tribonema minus UTEX_B_3156 )
GACTGCAACAAGACGTTCAGCTCTAAGGGAGGCATGTACAAGCACGTCAA GGCGGTGCATCTGAAGATCAAGGACGTCATCTGCACCCATGGAGGCTGCG GCCAGATGTTTTCACGTCATGGGCACATGCGGCACCACGTCAATGTGGTG CACTTGGGTATCAAGGCCGTGCCGTGCAGTCACGAAGGCTGCAAGAAGAC GTTCACGACCAAGCAAATGATCAAGAAGCACGTCAAAGCGGTGCAT
back to top

Coding sequence (CDS) from alignment at Contig_6:850464..850709-

>mRNA_2141 ID=mRNA_2141|Name=jgi.p|Trimin1|138734|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_6:850464..850709- (Tribonema minus UTEX_B_3156 )
GACTGCAACAAGACGTTCAGCTCTAAGGGAGGCATGTACAAGCACGTCAA
GGCGGTGCATCTGAAGATCAAGGACGTCATCTGCACCCATGGAGGCTGCG
GCCAGATGTTTTCACGTCATGGGCACATGCGGCACCACGTCAATGTGGTG
CACTTGGGTATCAAGGCCGTGCCGTGCAGTCACGAAGGCTGCAAGAAGAC
GTTCACGACCAAGCAAATGATCAAGAAGCACGTCAAAGCGGTGCAT
back to top