mRNA_2133 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158622
Unique NamemRNA_2133
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158622 vs. uniprot
Match: A0A835YPC8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPC8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.210e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MLELRHEIPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDF 117
            MLELRHEIPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDF
Sbjct:    1 MLELRHEIPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDF 39
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BLAST of jgi.p|Trimin1|158622 vs. uniprot
Match: A0A835Z6Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.810e-14
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:   22 IPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDF 117
            IPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDF
Sbjct:   37 IPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDF 68
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158622 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YPC8_9STRA2.210e-20100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6Z8_9STRA4.810e-14100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:812081..812629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158622|e_gw1.6.193.1
Hectar predicted targeting categoryother localisation
TranscriptId158944
TrackFilteredModels1
ProteinId158622
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158622gene_2133Tribonema minus UTEX_B_3156 geneContig_6 812081..812629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2133_1exon_2133_1Tribonema minus UTEX_B_3156 exonContig_6 812081..812629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2133CDS_2133Tribonema minus UTEX_B_3156 CDSContig_6 812081..812629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158622Trimin1|158622|e_gw1.6.193.1Tribonema minus UTEX_B_3156 polypeptideContig_6 812081..812629 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2133 ID=mRNA_2133|Name=jgi.p|Trimin1|158622|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_6:812081..812629- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAACTCCGCCATGAGATCCCGTGTCCTGAGGACGGCTGCGACGG
GGTGTTCACAACAAATCAGAGCATGCAGACGCACGTCGGCAATGTCCACA
AAGGCAGAAAAGACTTCGCATGCACAGAGGAGGGATGCCAGAAGAAGTTT
TCGAAGAAACACCACATGCAGAGGCACATAGACACTGTGCACCACGGCAG
GAAAGACTTTGCATGCACGGAGGAGGGATGCCAGAAGAAGTTTTCGAAGA
AACACCACATGCAGCAGCACGTCAACACTGTCCACCACGGCAGGAAAGAC
TTCGCATGCACGAAGGAGGGATGTCAGCAGATGTTTACAGCCGCTTCGAG
CATGCAGCAGCACATCGAAACTGTTCACAACGGCAGGAGAGACTTCACAT
GCACGGAGGAGGGATGCCAGCAGAAATTCTCGTTCAAACACCACATGCAG
CAGCACATCGACACGGTTTACCATGGCAGGAGAGACTTCGCATGCACAGC
TGAGGGATGCCAGCAGAAGTTCCCGCAAATACACCACATGAAGAACCAC
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protein sequence of jgi.p|Trimin1|158622

>Trimin1|158622|e_gw1.6.193.1 ID=Trimin1|158622|e_gw1.6.193.1|Name=jgi.p|Trimin1|158622|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MLELRHEIPCPEDGCDGVFTTNQSMQTHVGNVHKGRKDFACTEEGCQKKF
SKKHHMQRHIDTVHHGRKDFACTEEGCQKKFSKKHHMQQHVNTVHHGRKD
FACTKEGCQQMFTAASSMQQHIETVHNGRRDFTCTEEGCQQKFSFKHHMQ
QHIDTVYHGRRDFACTAEGCQQKFPQIHHMKNH
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mRNA from alignment at Contig_6:812081..812629-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2133 ID=mRNA_2133|Name=jgi.p|Trimin1|158622|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_6:812081..812629- (Tribonema minus UTEX_B_3156 )
ATGTTGGAACTCCGCCATGAGATCCCGTGTCCTGAGGACGGCTGCGACGG
GGTGTTCACAACAAATCAGAGCATGCAGACGCACGTCGGCAATGTCCACA
AAGGCAGAAAAGACTTCGCATGCACAGAGGAGGGATGCCAGAAGAAGTTT
TCGAAGAAACACCACATGCAGAGGCACATAGACACTGTGCACCACGGCAG
GAAAGACTTTGCATGCACGGAGGAGGGATGCCAGAAGAAGTTTTCGAAGA
AACACCACATGCAGCAGCACGTCAACACTGTCCACCACGGCAGGAAAGAC
TTCGCATGCACGAAGGAGGGATGTCAGCAGATGTTTACAGCCGCTTCGAG
CATGCAGCAGCACATCGAAACTGTTCACAACGGCAGGAGAGACTTCACAT
GCACGGAGGAGGGATGCCAGCAGAAATTCTCGTTCAAACACCACATGCAG
CAGCACATCGACACGGTTTACCATGGCAGGAGAGACTTCGCATGCACAGC
TGAGGGATGCCAGCAGAAGTTCCCGCAAATACACCACATGAAGAACCAC
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Coding sequence (CDS) from alignment at Contig_6:812081..812629-

>mRNA_2133 ID=mRNA_2133|Name=jgi.p|Trimin1|158622|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_6:812081..812629- (Tribonema minus UTEX_B_3156 )
ATGTTGGAACTCCGCCATGAGATCCCGTGTCCTGAGGACGGCTGCGACGG
GGTGTTCACAACAAATCAGAGCATGCAGACGCACGTCGGCAATGTCCACA
AAGGCAGAAAAGACTTCGCATGCACAGAGGAGGGATGCCAGAAGAAGTTT
TCGAAGAAACACCACATGCAGAGGCACATAGACACTGTGCACCACGGCAG
GAAAGACTTTGCATGCACGGAGGAGGGATGCCAGAAGAAGTTTTCGAAGA
AACACCACATGCAGCAGCACGTCAACACTGTCCACCACGGCAGGAAAGAC
TTCGCATGCACGAAGGAGGGATGTCAGCAGATGTTTACAGCCGCTTCGAG
CATGCAGCAGCACATCGAAACTGTTCACAACGGCAGGAGAGACTTCACAT
GCACGGAGGAGGGATGCCAGCAGAAATTCTCGTTCAAACACCACATGCAG
CAGCACATCGACACGGTTTACCATGGCAGGAGAGACTTCGCATGCACAGC
TGAGGGATGCCAGCAGAAGTTCCCGCAAATACACCACATGAAGAACCAC
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