mRNA_2050 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158645
Unique NamemRNA_2050
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A835YNH1_9STRA (FAD synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH1_9STRA)

HSP 1 Score: 628 bits (1620), Expect = 1.030e-227
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1
Query:    1 MVNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGLLCGPGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNRSPRVNGGPKTPAFPEGVLPPPGVGEGGAGPLVTADGAGAPALNSATSLSPVPSEPKGLAAAGGQLPGGVVGQWRRVLPAVVVALAVVGAVQLKVFKRP 924
            MVNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGLLCGPGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNRSPRVNGGPKTPAFPEGVLPPPGVGEGGAGPLVTADGAGAPALNSATSLSPVPSEPKGLAAAGGQLPGGVVGQWRRVLPAVVVALAVVGAVQLKVFKRP
Sbjct:    1 MVNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGLLCGPGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNRSPRVNGGPKTPAFPEGVLPPPGVGEGGAGPLVTADGAGAPALNSATSLSPVPSEPKGLAAAGGQLPGGVVGQWRRVLPAVVVALAVVGAVQLKVFKRP 308          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A6H5JDS2_9PHAE (PAPS_reduct domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDS2_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 6.990e-73
Identity = 127/243 (52.26%), Postives = 162/243 (66.67%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLY---TPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGLLCGPGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYEL--HDPALERSNRSPRVNGGPKTPAFPEGVLPPPGVGEGGAG 717
            ++ SLDVVR+AL+ +   T  GLA+SFNGGKDAC VL+LL+ VLAER +L  L         + V+ F+++EF  +  F Q+V+E Y    + Y  +Y+DGM+DLV++HG KAV+MGQR GDPWT+ M+ FT STPGW EF R+NP L W + +VWR LR   LPYC LYD+GYTSLGE   T KN ALR PDG+Y PAYEL   +  LERS R+P     P +P  P  V PP    +GG G
Sbjct:   51 LSQSLDVVRRALNDFGGETGRGLAISFNGGKDACVVLYLLLFVLAERDELWRLTSSASKH--IPVVYFEKEEFPEIDAFMQQVSETYQFEFQRYSKSYKDGMQDLVESHGIKAVIMGQRRGDPWTEDMEWFTASTPGWAEFTRVNPALEWKFCHVWRLLRGSGLPYCVLYDQGYTSLGERGDTSKNEALRLPDGSYRPAYELAEEEEYLERSPRTPT----PGSPRSPSRVSPPRERDDGGGG 287          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A4D9DGI7_9STRA (PAPS_reduct domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGI7_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.810e-56
Identity = 97/211 (45.97%), Postives = 131/211 (62.09%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGLLCGPGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKA--TYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNR 630
            +  +LD++   L L+    LA++FNGGKDAC VL+L+   L  RG      G  G   K+L    +  +F  V  F  K++E + +T   Y A  +++DGM DLV+  G KAV +G R GDP +   +   PS+PGWP F+R+NP+L W Y  +W FLRR  LPYC LYDEGYTSLG+   T++NPALRR +G Y PAY L +  LER+NR
Sbjct:   28 IQRALDLICTVLTLFPLEMLALTFNGGKDACVVLYLVQLALRLRGVAE---GEAGGRLKVLYFSPEHGDFPEVISFMAKISEDHHVTYTTYPAGTSFKDGMRDLVEKKGLKAVFLGVRRGDPHSLESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRVEGGYRPAYALENWTLERANR 235          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A813JD34_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JD34_POLGL)

HSP 1 Score: 193 bits (491), Expect = 8.940e-54
Identity = 110/229 (48.03%), Postives = 136/229 (59.39%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLG-LAVSFNGGKDACTVLFLLMTVLAERGQLGLLCG--PGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKA-TYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNRSPRVNGGPKTPAFPEG 678
            +  S  + R+   LY     LAVSFNGGKDAC VL+L +  LA   +     G  P   E + ++     DEFA V+ F   V  R  L +      ++R GMEDLV   G +AV+MGQR GDPW D +D F+PS  GWP F+R+NPI+ W Y  +W FLR   LPYC LYD+GYTSLG    T+KNPAL RPDGTY  A+EL D +LER+ RS   NG  K PA   G
Sbjct:   59 LRRSCMLCRRGAQLYPRSSDLAVSFNGGKDACVVLYLWLASLAAHARSAGKDGAEPSASEPQQVIFFDSPDEFAHVRLFVAWVIRRLSLKMVVIDGCSFRKGMEDLVAG-GMRAVVMGQRKGDPWMDKVDAFSPSDDGWPVFMRVNPIMDWSYSQIWAFLRVFGLPYCDLYDQGYTSLGSIGSTLKNPALLRPDGTYGAAHELVDGSLERAGRS-NGNGSAKVPAATNG 285          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A7S3SR65_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SR65_EMIHU)

HSP 1 Score: 181 bits (459), Expect = 1.490e-51
Identity = 94/211 (44.55%), Postives = 124/211 (58.77%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGLLCGPGGDEGKMLVICFD-RDEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNRS 633
            +   L+V   +L LY P  +  SFNGGKDA  +L L+   LA   +       GG   ++ VI F+ RDEF  V  F +   ERY L L  Y   +  G+E  + +HG+ A ++G R GDP   G   F PS+   P F+R+NP+LRW Y +VW+ LR   LP+C LY+EGYTSLG+   T  NPALR PDG+Y PA+ L D ALER+ RS
Sbjct:   87 LKEGLEVCAHSLRLYGPARVVTSFNGGKDAVAILHLMRAALAAHSE-----AAGGPRERLRVIFFEQRDEFPEVDAFVRDAVERYDLELCTYSDGFAAGLESCIADHGSAAFVLGTREGDPNGSGQGAFEPSSTWMPPFMRVNPVLRWSYAHVWQLLRGFALPFCSLYEEGYTSLGKQSDTEPNPALRLPDGSYRPAWLLDDGALERAGRS 292          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A0P1AUP6_PLAHL (Phosphoadenosine phosphosulfate reductase family protein isoform 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUP6_PLAHL)

HSP 1 Score: 179 bits (453), Expect = 6.210e-51
Identity = 96/253 (37.94%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAER----------------------GQLGLLCGPGGDEGKML-----------VICFDR-DEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRP-----DGTYIPAYELHDPALERSNRSPRVN 645
            +  +LDV+R A+D++   G+  SFNGGKD+  +L LL  V+A+R                       +   L     DE ++            V+ FD  D+F  V+EFT+K  ++YGL+   YK ++ +G++D++     K + MG R GDP T+ M+ F+PS+PGWP F+R+NPIL+W Y  VW+FLR C L YC LYD GYTSLG    T++NP L R      +G Y+PA++L D + ER  R  + +
Sbjct:   28 LQKALDVIRSAIDIFGLEGVCFSFNGGKDSTVILHLLRIVIAKRVLEEVQLERIHEAVDCPKTITSPRNSFLSADLMDEDELEARVMAQLQRVPVMYFDSYDQFQEVREFTEKCTKQYGLSCHVYKCSFVEGVKDILDKLQIKGIYMGVRGGDPHTEDMEHFSPSSPGWPAFLRVNPILKWTYADVWKFLRNCDLDYCSLYDHGYTSLGNVFDTVQNPELWRKGEDAKEGYYLPAHDLKDGSSERCGRQKKAH 280          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A484E2J5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2J5_BRELC)

HSP 1 Score: 177 bits (450), Expect = 1.210e-50
Identity = 99/240 (41.25%), Postives = 136/240 (56.67%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAER----------------GQLGLLCGPGGDEGK---------MLVICFDR-DEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRP-----DGTYIPAYELHDPALERSNR 630
            V  +LDV+R A+D++   G+ +SFNGGKD+  +L LL  VLA+R                 +  L+     DE +         + V+ FD  D+F  V+ FT+K  + Y L    YK ++ +G++D++     K + MG R GDP+TD M+ F PS+PGWP F+R+NPIL+W Y  VW FLR C L YC LYD GYTSLG    T++NP L R      +G Y+PAYEL D   ER  R
Sbjct:   23 VQKALDVLRSAIDIFGLDGVCLSFNGGKDSTVLLHLLRIVLAKRVLEEVQLMHSKKNLASSRTPLVDLLPDDELETRVQAQLQDIPVMYFDSYDQFLEVRAFTEKCTKMYALNCHVYKCSFVEGVKDMINTLKIKGIYMGVRGGDPYTDDMEHFAPSSPGWPPFLRVNPILKWTYADVWSFLRDCSLSYCTLYDHGYTSLGTVFDTVQNPELWRKRNDTREGHYLPAYELKDGNSERCGR 262          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A7S2QJR4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJR4_9DINO)

HSP 1 Score: 175 bits (444), Expect = 1.530e-50
Identity = 95/195 (48.72%), Postives = 124/195 (63.59%), Query Frame = 1
Query:   82 GKDACTVLFLLMTVLAERGQLGLLCGP---GGDEGK-MLVICFDRD-EFAAVQEFTQKVAERYGLTLRHYKAT-YRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYELHDPALERSNRSPRVNG 648
            GKDAC VL+L +  LA       + GP   GG  G+   VI FD D EF+AV++F   V    GL +   +++ ++ GME LV + G  AV+MGQR GDPW D +D F+PS+ GWP F+R+NPI+ W Y +VW FLR   LPYC +YD GYTS+G    T  NPALRRPDG++ PAYEL D + ER+ R  +  G
Sbjct:    1 GKDACVVLYLFLASLAA------VAGPAPGGGVVGEGQRVIFFDSDNEFSAVRDFVSWVVSTLGLRMLAVESSGFKRGMEGLV-SAGLSAVVMGQRRGDPWMDKVDMFSPSSDGWPAFMRVNPIIDWAYSHVWLFLRAFGLPYCAMYDAGYTSIGSVGDTAPNPALRRPDGSFAPAYELRDASSERAGRHAKKGG 188          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: A0A225WBY7_9STRA (FAD synthetase n=12 Tax=Phytophthora TaxID=4783 RepID=A0A225WBY7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.230e-50
Identity = 96/256 (37.50%), Postives = 143/256 (55.86%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAER-----GQLGLLCGPGGDEG-------------------------------KMLVICFDR-DEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRP-----DGTYIPAYELHDPALERSNRSPRVN 645
            +  +LDV+R A+D++   G+  SFNGGKD+  VL LL  V+A+R         L    G +EG                               ++ V+ FD  D+F  V+EFT++  ++Y L+   YK ++ +G++D+++    K + MG R GDP+T+ M+ F+PS+PGWP F+R+NP+L+W Y  VW FLR C+L YC LYD GYTSLG    T++NP L R      +G Y+PAY+L D   ER  R  + +
Sbjct:   29 LQKALDVMRSAIDIFGLEGVCFSFNGGKDSTVVLHLLRIVVAKRVLEEAQAAHLRAQVGAEEGPKTVTSPRNSFVSAELLQEEELEARVKKQLQRVPVMYFDSYDQFPEVREFTEECTKKYELSCHVYKCSFVEGVKDILEKLKIKGIYMGVRGGDPYTEEMEHFSPSSPGWPPFLRVNPVLQWTYADVWSFLRDCQLEYCSLYDHGYTSLGNIFDTVQNPELWRKGEDGKEGYYLPAYKLKDGTSERCGRQKKAH 284          
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Match: H3GM91_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM91_PHYRM)

HSP 1 Score: 176 bits (447), Expect = 5.600e-50
Identity = 99/257 (38.52%), Postives = 142/257 (55.25%), Query Frame = 1
Query:    4 VNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAER------------------GQLGLLCGPGG----------DE---------GKMLVICFDR-DEFAAVQEFTQKVAERYGLTLRHYKATYRDGMEDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPYDYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRP-----DGTYIPAYELHDPALERSNRSPRVN 645
            +  +LDVVR A+D++   G+  SFNGGKD+  VL LL  V+ +R                  G    +  P            DE          ++ V+ FD  D+F  V+EFT++  E+Y L+   YK ++ +G++D+++    K V MG R GDP+T+ M+ F+PS+PGWP F+R+NPIL W Y  VW FLR C+L YC LYD GYTSLG    T++NP L R      +G Y+PAY+L D + ER  R  + +
Sbjct:   29 LQKALDVVRSAIDIFGLEGVCFSFNGGKDSTVVLHLLRIVVGKRVLEEAQQAHDKIQQEAVGGPKTTVTSPRNSFVSADLLHEDELETRVNAQLQRVPVMYFDSYDQFPEVREFTEQCTEKYALSCHVYKCSFVEGVKDILEKLKIKGVYMGVRGGDPYTEDMEHFSPSSPGWPPFLRVNPILCWTYADVWSFLRDCQLEYCSLYDHGYTSLGNIFDTVQNPELWRKGEDSKEGYYLPAYDLKDGSSERCGRQKKAH 285          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158645 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNH1_9STRA1.030e-227100.00FAD synthetase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6H5JDS2_9PHAE6.990e-7352.26PAPS_reduct domain-containing protein n=2 Tax=Ecto... [more]
A0A4D9DGI7_9STRA4.810e-5645.97PAPS_reduct domain-containing protein n=1 Tax=Nann... [more]
A0A813JD34_POLGL8.940e-5448.03Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]
A0A7S3SR65_EMIHU1.490e-5144.55Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A0P1AUP6_PLAHL6.210e-5137.94Phosphoadenosine phosphosulfate reductase family p... [more]
A0A484E2J5_BRELC1.210e-5041.25Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2QJR4_9DINO1.530e-5048.72Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A225WBY7_9STRA2.230e-5037.50FAD synthetase n=12 Tax=Phytophthora TaxID=4783 Re... [more]
H3GM91_PHYRM5.600e-5038.52Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:146236..148861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158645|e_gw1.6.296.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00002
KEGG ReactionR00161
KEGG ModuleM00125
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG koko:K00953
EC2.7.7.2
GOsGO:0003674,GO:0003824,GO:0003919,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006747,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042726,GO:0042727,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046443,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0070566,GO:0071704,GO:0071944,GO:0072387,GO:0072388,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Descriptionflavin adenine dinucleotide biosynthetic process
COG categoryEH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0175@1|root,KOG2644@2759|Eukaryota
Evalue2.55e-72
Seed ortholog2880.D7FQC0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD synthetase
Ec32 orthologEc-01_006670.1
TranscriptId158967
TrackFilteredModels1
ProteinId158645
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158645gene_2050Tribonema minus UTEX_B_3156 geneContig_6 146236..148861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158645Trimin1|158645|e_gw1.6.296.1Tribonema minus UTEX_B_3156 polypeptideContig_6 146236..148861 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2050_3exon_2050_3Tribonema minus UTEX_B_3156 exonContig_6 146236..146738 -
exon_2050_2exon_2050_2Tribonema minus UTEX_B_3156 exonContig_6 147025..147204 -
exon_2050_1exon_2050_1Tribonema minus UTEX_B_3156 exonContig_6 148618..148861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2050CDS_2050Tribonema minus UTEX_B_3156 CDSContig_6 148618..148861 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2050 ID=mRNA_2050|Name=jgi.p|Trimin1|158645|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=927bp|location=Sequence derived from alignment at Contig_6:146236..148861- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAATCATAGCCTGGATGTCGTAAGAAAGGCACTGGACTTGTACAC
TCCTCTTGGCCTGGCAGTCAGCTTCAACGGCGGCAAGGATGCGTGCACTG
TCCTGTTTCTGCTGATGACGGTGTTAGCGGAAAGAGGACAATTGGGGCTG
CTTTGCGGGCCGGGCGGCGATGAAGGAAAGATGCTGGTGATTTGCTTTGA
CAGGGACGAGTTTGCTGCGGTGCAGGAGTTTACACAAAAGGTGGCGGAGC
GGTATGGACTGACACTACGCCACTACAAAGCCACCTACAGAGATGGCATG
GAGGATCTGGTCCAGAATCACGGCACCAAAGCAGTGCTCATGGGGCAGCG
ATACGGTGACCCCTGGACGGATGGCATGGACGATTTCACGCCCAGCACAC
CCGGCTGGCCGGAGTTTGTCAGGTTGAACCCCATCCTCCGGTGGCCGTAC
GACTACGTCTGGCGCTTCCTAAGGCGCTGCCGCCTGCCCTACTGCCACCT
CTACGACGAGGGCTACACCTCGCTGGGCGAAGCAGTGCTCACCATCAAAA
ACCCCGCGCTGCGGCGACCCGACGGTACCTACATACCCGCCTACGAGCTC
CACGACCCCGCGCTAGAGCGCTCCAACAGGTCCCCGCGCGTTAACGGGGG
GCCGAAAACCCCCGCGTTTCCGGAGGGGGTGCTGCCCCCGCCGGGCGTCG
GCGAGGGGGGTGCGGGGCCCCTGGTAACAGCTGACGGGGCGGGGGCACCC
GCCTTAAATTCTGCTACTAGCTTGAGTCCTGTGCCAAGTGAACCGAAGGG
GCTGGCGGCGGCAGGGGGGCAGTTGCCAGGGGGGGTTGTGGGGCAGTGGC
GGCGGGTGCTGCCGGCGGTGGTGGTGGCGCTGGCGGTGGTGGGGGCGGTG
CAGCTGAAGGTGTTCAAGCGGCCATAG
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protein sequence of jgi.p|Trimin1|158645

>Trimin1|158645|e_gw1.6.296.1 ID=Trimin1|158645|e_gw1.6.296.1|Name=jgi.p|Trimin1|158645|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=309bp
MVNHSLDVVRKALDLYTPLGLAVSFNGGKDACTVLFLLMTVLAERGQLGL
LCGPGGDEGKMLVICFDRDEFAAVQEFTQKVAERYGLTLRHYKATYRDGM
EDLVQNHGTKAVLMGQRYGDPWTDGMDDFTPSTPGWPEFVRLNPILRWPY
DYVWRFLRRCRLPYCHLYDEGYTSLGEAVLTIKNPALRRPDGTYIPAYEL
HDPALERSNRSPRVNGGPKTPAFPEGVLPPPGVGEGGAGPLVTADGAGAP
ALNSATSLSPVPSEPKGLAAAGGQLPGGVVGQWRRVLPAVVVALAVVGAV
QLKVFKRP*
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mRNA from alignment at Contig_6:146236..148861-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2050 ID=mRNA_2050|Name=jgi.p|Trimin1|158645|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2626bp|location=Sequence derived from alignment at Contig_6:146236..148861- (Tribonema minus UTEX_B_3156 )
ATGGTGAATCATAGCCTGGATGTCGTAAGAAAGGCACTGGACTTGTACAC TCCTCTTGGCCTGGCAGTCAGCTTCAACGGCGGCAAGGATGCGTGCACTG TCCTGTTTCTGCTGATGACGGTGTTAGCGGAAAGAGGACAATTGGGGCTG CTTTGCGGGCCGGGCGGCGATGAAGGAAAGATGCTGGTGATTTGCTTTGA CAGGGACGAGTTTGCTGCGGTGCAGGAGTTTACACAAAAGGTGGGTTCGC CTGCTGAGGCAGTGGATGGTTGGTATTATGTGTATGCTGTTGTTGGTTTG TCCCGTACAGGGTCATTGTCCGTAGAAACAATCATCAATGGAATTACCTT GCACACATTGGCGTAACTGAGTGCATGTGGATGGCAGCCATGCTCAGTCT GCGCCCGCAGCATGCCATTGGCAGCTAGCATGAAGCAACATTACAGTGGG GGCACTCGCAGGTCAAACATTAGCCTTCCCCCAGTGCGTGCTTACAAGAC GACGAGCGCTCGATGTGTTAACAACATATTTCCATCAGTGCTCTGATTCT TGTGGGCCTCACTTCTGACAGCTGGCAAGTTCAGGTAGGGTTTAGGGTTA GCGGAGCCTCAGTGCTCGCCGTTTGCGCAGAGCTGCGCATACCCGTGCTC TGTGCGCCAGCATAAGTGGCTGGCAGCGTGGTTGCGTCCGCATGCTTATG CCATTGCCTGGCTTGCAATGTCAGGGTCATCTTAAGTGACGTCCGCCCCG TAATGCTAGTGCCTGGCTCTAGGCACACTGCAGCACGTCAGCGCCAGTCA TGGGGCAGCCTGCGCAGTGCTTCATGAAGCACTGCACCTGCATCACTGAG CCGTCTCTTCAGATGACTGAGTCTGACCGTGGCAGCTGTGCTGGCATCCT GTTCATCAGCATCAGCACCTTGGTGGTGAAGCTCAGACGAGGGCAAGTGC ATGCACATGGTAGCAACGCGCATCAATCTAGCAATCAAAATGGTTTCAGC GCAGCAGATATGGGACAGGTTTTTCTTGCCATTGACGTTTTACAGTACGT GACGGATGGTGCACACATCACTCGCTGAGCACTGCTCAGGCTAGGTAGGT AGGTACGTCGTCAACCGCAGCTGATGGCTGACTGTTAGTGTGCGCTCATG TCTCACTATCAGTGCATCAGACATTTGAGCACTGAGAGCGTATAGAGCAC CACCGCGCCAGAGAGGGACGACCAGGGGATCCAGCGCGACACAAGACTTG CGGCCAGTGCACGTGTTGTTCGTTGAGAATCAGAACATGATCACTCACAT CAGTGCTCAGCAGGACCCGCGCTCAACATGAGCTGAGCTCTGCGCTGTCG AAAGAATACTTTATAATAGAGATATGAACATACATGCCTTCATCTCACAC GCTCCATTGTGAGGAATCACTGTCACTCTCTCACATCCAGCAACACCAAA CGACTATGCAGGGGCTGCACCCTGCAACATTCAATGTGCTGCTGGCTGAC AGCAAGAGCTGATACCATCACCGTGACAGTAACCAGGGCCCTGCAAAGGC AGTGGGCGGATCACGCTGTGCATGCAAATTCTCTGAATCAGGCAACCCTC CTTGCGTATTCACTGAGCTTGCATTTGCACTTGCATTTGCCAATTGTCCG CAGCTAGCGGAGCGGTATGGACTGACACTACGCCACTACAAAGCCACCTA CAGAGATGGCATGGAGGATCTGGTCCAGAATCACGGCACCAAAGCAGTGC TCATGGGGCAGCGATACGGTGACCCCTGGACGGATGGCATGGACGATTTC ACGCCCAGCACACCCGGCTGGCCGGAGTTTGTCAGGTGTGCATGCTTGTT TGCTCATACTTCTACTTAAAGTATGTACATACCCTTGATGAAAGCAACTG CAGTACGCTATGGGAGTAATTCAAAACATGCAAGTTCTGTGCACCGCACC ATATGTGCGGAGGTGAGCACGCGCTATGTAGGCAATCTTTTCGCTTCGGT GACTCGCGCGCAACTCCACCCGCTTTCCTTTACACGGACACGTTGCTCCC GGCACCATGTCCACTCCTATGATGACTGAGATTGTCTCGGTGCCTGACCC TAACCCTGCTTGCTCGCGCAGAGTGAACCCCATCCTCCGGTGGCCGTACG ACTACGTCTGGCGCTTCCTAAGGCGCTGCCGCCTGCCCTACTGCCACCTC TACGACGAGGGCTACACCTCGCTGGGCGAAGCAGTGCTCACCATCAAAAA CCCCGCGCTGCGGCGACCCGACGGTACCTACATACCCGCCTACGAGCTCC ACGACCCCGCGCTAGAGCGCTCCAACAGGTCCCCGCGCGTTAACGGGGGG CCGAAAACCCCCGCGTTTCCGGAGGGGGTGCTGCCCCCGCCGGGCGTCGG CGAGGGGGGTGCGGGGCCCCTGGTAACAGCTGACGGGGCGGGGGCACCCG CCTTAAATTCTGCTACTAGCTTGAGTCCTGTGCCAAGTGAACCGAAGGGG CTGGCGGCGGCAGGGGGGCAGTTGCCAGGGGGGGTTGTGGGGCAGTGGCG GCGGGTGCTGCCGGCGGTGGTGGTGGCGCTGGCGGTGGTGGGGGCGGTGC AGCTGAAGGTGTTCAAGCGGCCATAG
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Coding sequence (CDS) from alignment at Contig_6:146236..148861-

>mRNA_2050 ID=mRNA_2050|Name=jgi.p|Trimin1|158645|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=927bp|location=Sequence derived from alignment at Contig_6:146236..148861- (Tribonema minus UTEX_B_3156 )
ATGGTGAATCATAGCCTGGATGTCGTAAGAAAGGCACTGGACTTGTACAC
TCCTCTTGGCCTGGCAGTCAGCTTCAACGGCGGCAAGGATGCGTGCACTG
TCCTGTTTCTGCTGATGACGGTGTTAGCGGAAAGAGGACAATTGGGGCTG
CTTTGCGGGCCGGGCGGCGATGAAGGAAAGATGCTGGTGATTTGCTTTGA
CAGGGACGAGTTTGCTGCGGTGCAGGAGTTTACACAAAAGGTGGCGGAGC
GGTATGGACTGACACTACGCCACTACAAAGCCACCTACAGAGATGGCATG
GAGGATCTGGTCCAGAATCACGGCACCAAAGCAGTGCTCATGGGGCAGCG
ATACGGTGACCCCTGGACGGATGGCATGGACGATTTCACGCCCAGCACAC
CCGGCTGGCCGGAGTTTGTCAGGTTGAACCCCATCCTCCGGTGGCCGTAC
GACTACGTCTGGCGCTTCCTAAGGCGCTGCCGCCTGCCCTACTGCCACCT
CTACGACGAGGGCTACACCTCGCTGGGCGAAGCAGTGCTCACCATCAAAA
ACCCCGCGCTGCGGCGACCCGACGGTACCTACATACCCGCCTACGAGCTC
CACGACCCCGCGCTAGAGCGCTCCAACAGGTCCCCGCGCGTTAACGGGGG
GCCGAAAACCCCCGCGTTTCCGGAGGGGGTGCTGCCCCCGCCGGGCGTCG
GCGAGGGGGGTGCGGGGCCCCTGGTAACAGCTGACGGGGCGGGGGCACCC
GCCTTAAATTCTGCTACTAGCTTGAGTCCTGTGCCAAGTGAACCGAAGGG
GCTGGCGGCGGCAGGGGGGCAGTTGCCAGGGGGGGTTGTGGGGCAGTGGC
GGCGGGTGCTGCCGGCGGTGGTGGTGGCGCTGGCGGTGGTGGGGGCGGTG
CAGCTGAAGGTGTTCAAGCGGCCATAG
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