mRNA_2018 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163603
Unique NamemRNA_2018
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A835Z1H9_9STRA (SF3 helicase domain-containing protein (Fragment) n=6 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H9_9STRA)

HSP 1 Score: 684 bits (1765), Expect = 1.650e-247
Identity = 346/360 (96.11%), Postives = 351/360 (97.50%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNYRARQEPALLPIKKRDMHEQMAAKGFAK 1080
            DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGH REEIIVFLLGRSARNGKGIIESLLQQVLGC+FYQAPQ  SFLTACKAVSAG+ASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMP+IKAEPAIMQRIEI PCDAKFRTPGDAKFPYDAND+THFIKNT LRENLPVEAFLA V QAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPR+G DPALILCSSAFSGYNNYRARQEPAL PIKKRDMHEQMAAKGFAK
Sbjct:    9 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQ--SFLTACKAVSAGSASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAGVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYRARQEPALPPIKKRDMHEQMAAKGFAK 366          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A835YS19_9STRA (D5_N domain-containing protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS19_9STRA)

HSP 1 Score: 685 bits (1768), Expect = 1.180e-238
Identity = 352/386 (91.19%), Postives = 358/386 (92.75%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNYRARQEPALLPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYAGLKSAGGF 1158
            DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGH REEIIVFLLG SARNGKGIIESLLQQVLGC+FYQAPQ  SFLTACKAVSAGAASSHMMALR            G  +DAQMIKYISGGADISGRELFG QTSFSPTAVP ANTNEMP+IKAEPAIMQRIEI PCDAKFRTPGDAKFPYDAND+THFIKNT LRENLPVEAFLAVV QAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPR+G DPALILCSSAFSGYNN RARQEPAL PIKKRDMHEQMAAKGFAKIDDYRKAHSQ N KCVYAGLKSAGG+
Sbjct:  614 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGCSARNGKGIIESLLQQVLGCMFYQAPQ--SFLTACKAVSAGAASSHMMALRAT---------GGRCVDAQMIKYISGGADISGRELFGKQTSFSPTAVPRANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNSRARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQDNCKCVYAGLKSAGGY 988          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A835Z1L1_9STRA (D5_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.690e-52
Identity = 137/385 (35.58%), Postives = 196/385 (50.91%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEISPCDAK-FRTPGDAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNYRARQEPALLPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYAGLKSAG 1152
            D+ F  LLD +KD+ S  +GVV+L TATLRPRVR D L  A++  ++ + P +  + + + D+TL+   RL RP  LE + R++GYSITGH REEIIV  +G  A N KG++  LL  VL  L+Y AP+++   TA     AGAASS M AL G R+  +DE+P     D Q  + ++GGA I  REL+  Q SF        N N    ++   A ++RI   P D +       +    D  +  H + +  ++ NL   AF +     AK+WYE GLG  P CC         +N  +  WI + CE+G  +G      L +S    +N++ A + P    I       +M  +GF      R   +Q   K    GLK AG
Sbjct:   13 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLS--ERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGA-NSKGVLHELLSDVLESLYYAAPRSIIVQTARG--GAGAASSDMAALNGKRIGAVDEMPDEPLNDTQF-RLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVG--EG------LMASTKMAWNDFCASR-PEGNNITNASFRVEMGRRGFHIAQATR---TQLRDKRCCHGLKIAG 379          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A1Y1IMX7_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMX7_KLENI)

HSP 1 Score: 106 bits (265), Expect = 2.820e-21
Identity = 96/349 (27.51%), Postives = 152/349 (43.55%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRI-LGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSA-GAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIK-AEPAIMQRIEISPCDAKFRTPG--DAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGG--------LGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNYRAR 1008
            D +  KL+D + D   C NGV++L T  L       + TR+  + Y   S         + D+        N    + R L++ LGY++TGH  EEI     G  + NGK  ++  LQ+  G   Y  P +   +       A GAASSH++AL+GAR+   DE      +++  IK ++GG  ++ RELF    SF PT      TN  P I  A+  +++R+ + P    ++     D   P+     TH    T L  +   E  L  V + +  WY           L   PA    A D +  E D ++ ++ + C++GP      A +L        ++ +AR
Sbjct:  522 DPEMIKLMDCDIDSVGCPNGVLDLRTGILSFAHPSQLCTRSTGVRYMGLSHNTDRFDAFVMDL-------FNSDESIVRWLQLFLGYALTGHTSEEIFCIWYGAGS-NGKSALKMALQKAFGS--YYTPMSKDCIIKAGGKRAEGAASSHLVALKGARLALCDESEESQVINSACIKEMTGGGAVTCRELFQKCESFVPTHANVLLTNHKPSIADADGGLLRRVSLLPFRNSYKVAEEVDPNDPHSKPQSTHL--KTWLESSEGAEECLVWVVRGSVEWYARQSANPAAKVLAPLPAPMAAAFDEYLREFDDMRMFLKEFCDIGPTFVAPSADLLARFNAEMNSDLKAR 858          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A4P6JVW9_9CHLR (SF3 helicase domain-containing protein n=1 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6JVW9_9CHLR)

HSP 1 Score: 106 bits (265), Expect = 3.160e-21
Identity = 101/359 (28.13%), Postives = 165/359 (45.96%), Query Frame = 1
Query:   40 IFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKA-EPAIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIKNTNLRENLPVE--AFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNYRARQEPALLPIKKRDMHEQMAAKGFAKIDDYRKAHS 1107
            + +  +GV++L T  LRP   +D +       +       P   Q L +I    P+R +  A L+RL    GYSITG   E +   L G   RNGK  + ++L++VLG         + F ++ +  S GA + H+  L+G R++  +E   G  L+   IK+++GG++IS R+L G Q SF PT +    TN  P   A + A  +R  +   D K R     K  Y+        K++ L   L  E    LA + +   RW + GL   P+   L  + +  E D L ++I D C + P      A +  S  ++ Y  +   +E  L+ +  R   E+M+ +   K ++  K +S
Sbjct:  570 LLATPSGVLDLRTGQLRPGRPEDFIRTVCPTKWTGLETPCPRFEQFLQEIFEDKPDRTSVIAFLQRL---FGYSITGLTCEAVFPILFGEEGRNGKDTLLNVLREVLGPHAGAVSHDV-FTSSDRFRSGGAPTPHLCDLQGKRLIWGNETRQGECLNVAQIKWLTGGSEISARQLHGEQFSFQPTHLMLLMTNYKPQADARDKAFWERACL--IDFKMRFVDRPKETYERK------KDSTLLGRLKAERSGILAWLVRGCLRWQQVGLNT-PSSVLLWTERYREEEDNLLAFIGDCCIVRP-----DAEVRASELYNAYKEWG--KENQLVVLNGRLFKEEMSKRFAWKRNNKGKYYS 908          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A257JK46_9PROT (SF3 helicase domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium PA3 TaxID=2015571 RepID=A0A257JK46_9PROT)

HSP 1 Score: 105 bits (261), Expect = 5.690e-21
Identity = 103/379 (27.18%), Postives = 170/379 (44.85%), Query Frame = 1
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEP-AIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNYRARQEPALLPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYAGLKSAGG 1155
            LD    +    NGVV+L    L P      +TR    D++  S + P  ++ L  +       ++   LL      LGY++TG+  EEI++F +G  A NGK I  +++  +LG     AP   S L A +        + M  L GAR+V ++ELPAG+ LD Q++K ++G   IS R L     ++ P   PW  TN  P++K +   I +RI I P    F            +++   ++   LRE    +  LA + + A+R+   GL   PA  K     +  ++D L  ++  EC          A +   + F  + N+   ++  + P  K+   +++  +GF   D         N K  Y GL+++GG
Sbjct:  195 LDAKPLLLGVGNGVVDLRRKRLLPNEPGYFITRYCYADFDP-SAQCPSWLRSLDAMFQGDTATIDAVQLL------LGYTLTGYSTEEIMIFCVGFGA-NGKSIFGNVVAAILGDYSRTAP---SQLLASRRTDDHGPRNDMAMLDGARLVSINELPAGMHLDEQVVKQLAGREPISARFLHKEYFTYEPRFTPWVRTNHKPIVKGDDEGIWRRIVILPFRRTFAP----------HEQDPHLEGKLLRER---DGILAWMVEGAQRYLREGLKLSPAM-KRELAQYRTDSDMLGEFLA-ECTAT----ATGARVEQKTLFLSWQNWC--KDNGVQPGSKKTFTQRLKERGFPPKDS--------NGKRYYQGLRTSGG 533          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: UPI000AB7246B (Uncharacterized protein n=2 Tax=Croceicoccus mobilis TaxID=1703339 RepID=UPI000AB7246B)

HSP 1 Score: 103 bits (258), Expect = 2.100e-20
Identity = 81/225 (36.00%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDML-TRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEP-AIMQRIEISPCDAKF 690
            LD N  +    NGVV+L T  L P  R DML TR    DY+  +   P  +Q L ++           A +  + R LGY++TG   EEIIVF +G  A NGK I  +++ +++G     AP +L  L   +    G      M L GAR+V ++ELPAG+ +D Q +K ++G   IS REL+    +F P    W  TN  P+IK +   I +RI + P   KF
Sbjct:  450 LDANPMLLGVGNGVVDLTTGALVPN-RSDMLITRHCEADYDM-AATCPRWVQFLDEVFAGDQ------ATIHSVQRSLGYTLTGLNTEEIIVFCIGFGA-NGKSIFGNIVNRIIGGYSKVAPHSL--LATRRRDDHGPRGDIAM-LEGARLVSVNELPAGMQMDEQAVKALAGREPISARELYEGFRTFDPRFTVWVRTNHRPIIKGDDDGIWRRIIVLPFRQKF 662          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: UPI00189C5EC8 (phage/plasmid primase, P4 family n=2 Tax=Lachnospiraceae TaxID=186803 RepID=UPI00189C5EC8)

HSP 1 Score: 98.6 bits (244), Expect = 7.600e-19
Identity = 62/204 (30.39%), Postives = 100/204 (49.02%), Query Frame = 1
Query:   25 DVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIK 636
            D +  + +C+NG  +L + T R     D LT   N +Y     +     Q + ++T    ++       + L R LGYSI G  +EE +  L G++ RNGK  +   +Q +LG      P  L      +A +A AAS  +  L+G R+V + E      LD  +IK ++GG +I+ REL+ T  +F P    W + N++P +K
Sbjct:  146 DTHPFLINCKNGTYDLESLTFREHKWNDFLTMQTNFEYGVKKEKCARWEQFIKEVTQNDKDKA------DYLQRALGYSILGTSKEECMFILHGKTTRNGKSTMLDAIQHLLGDYSTVTPVEL-ICRGDRAKNAEAASPVLAKLKGKRMVTMSESDTAGKLDESVIKQLTGGEEITARELYQTAITFKPQFTMWLSCNDLPAVK 342          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: A0A381R4E2_9ZZZZ (SF3 helicase domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381R4E2_9ZZZZ)

HSP 1 Score: 99.0 bits (245), Expect = 1.020e-18
Identity = 78/309 (25.24%), Postives = 144/309 (46.60%), Query Frame = 1
Query:    7 DFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGGLGEK-PACCKLACDAFAAENDTLQSWINDECEL 930
            DF+ +++ N D  + +NG ++L T  L  R   D  T  ++I+++ +  + P + + ++DI L     +N       L   +GYSITGH +E+      G    NGK ++  LL +  G  F       S + + K  +AG A++H+  ++  R   +DE      ++  ++K I+GG  +  R+L           VP   TN  P    +PA+ +R+ +   +A+F    +    YD N+  H  K++++   +     L+   + A +WY+ G   K P   K     F    + +  ++++ECEL
Sbjct:  501 DFQDMINGNPDSIAVRNGNIDLRTGKLVNRRFDDYNTFFLDIEFD-EFMKTPNMDKFMSDIMLEQEEIINF------LSTFIGYSITGHNKEQKFSVWYGDKGSNGKSVLAKLLDKTFGEYFTILD---SEIFSVKKGTAGTATTHLNYIQDKRFGIMDESNKNEEMNEGLVKRITGGTKLRIRKLHKESELIEVVLVPIILTNFKPKFSNDPALFRRMILIEFEAQF-LDDETDIKYDKNNPRHKWKDSDIDNKISDNEVLSYFVRFATKWYQSGQKLKIPDKIKKYNKKFQHNCNVINKFLDNECEL 798          
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Match: W0RME9_9BACT (Phage/plasmid primase, P4 family n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RME9_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 1.220e-18
Identity = 93/326 (28.53%), Postives = 137/326 (42.02%), Query Frame = 1
Query:   25 DVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKA-EPAIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIKNTNLRENLPVEAFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPRDGVDPALILCSSAFSGYNNY 999
            D + D+ +  NG ++L T  LRP  R+D +T+ V+I   AD+ R P  +  L  I     + +        L R +GYS+TGH RE+ + FL+  +  NGK    S   QVL  L   A     F T           + +  L GARVV   E   G  L   +IK ++G   +S R L+     F PT   W   N  PV++  +  I +R+ + P +     P +     DA           L+  LP    L         W  G L + P    LA  ++ AE+D L +WI + C        D A    SS ++ Y  +
Sbjct:  118 DADPDLLTLANGTLDLRTGRLRPHAREDRITKLVDIRLEADA-RCPTWLAFLERIMGGDQDMIGF------LQRAIGYSLTGHTREQCM-FLMHGTGSNGK----SKFLQVLRWLVGDAAVAADFATFLDRGRDSGPRNDVARLLGARVVTASEANEGQRLAEGLIKSVTGDDVVSARYLYSEAFEFKPTFKLWLAANHKPVVRGTDDGIWRRVRLVPFEVTI-PPEEQDHELDAK----------LQGELP--GILGWALDGCLAWRRGRL-QPPERVLLATASYRAESDVLGAWIAECCVR-----EDGAADAASSLYASYKKW 412          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163603 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1H9_9STRA1.650e-24796.11SF3 helicase domain-containing protein (Fragment) ... [more]
A0A835YS19_9STRA1.180e-23891.19D5_N domain-containing protein n=5 Tax=Tribonema m... [more]
A0A835Z1L1_9STRA1.690e-5235.58D5_N domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1Y1IMX7_KLENI2.820e-2127.51SF3 helicase domain-containing protein n=1 Tax=Kle... [more]
A0A4P6JVW9_9CHLR3.160e-2128.13SF3 helicase domain-containing protein n=1 Tax=Kte... [more]
A0A257JK46_9PROT5.690e-2127.18SF3 helicase domain-containing protein (Fragment) ... [more]
UPI000AB7246B2.100e-2036.00Uncharacterized protein n=2 Tax=Croceicoccus mobil... [more]
UPI00189C5EC87.600e-1930.39phage/plasmid primase, P4 family n=2 Tax=Lachnospi... [more]
A0A381R4E2_9ZZZZ1.020e-1825.24SF3 helicase domain-containing protein n=1 Tax=mar... [more]
W0RME9_9BACT1.220e-1828.53Phage/plasmid primase, P4 family n=1 Tax=Gemmatiro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:1058478..1059638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163603|e_gw1.26.134.1
BRITEko00000
KEGG koko:K06919
DescriptionD5 N terminal like
COG categoryS
Max annot lvl1224|Proteobacteria
EggNOG OGsCOG3378@1|root,COG3378@2|Bacteria,1MV7I@1224|Proteobacteria,42YMP@68525|delta/epsilon subdivisions,2WUNJ@28221|Deltaproteobacteria,2MGFT@213115|Desulfovibrionales
Evalue8.93e-26
Seed ortholog573370.DMR_15020
Hectar predicted targeting categoryother localisation
TranscriptId163925
TrackFilteredModels1
ProteinId163603
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163603gene_2018Tribonema minus UTEX_B_3156 geneContig_26 1058478..1059638 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2018_1exon_2018_1Tribonema minus UTEX_B_3156 exonContig_26 1058478..1059638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2018CDS_2018Tribonema minus UTEX_B_3156 CDSContig_26 1058478..1059638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163603Trimin1|163603|e_gw1.26.134.1Tribonema minus UTEX_B_3156 polypeptideContig_26 1058478..1059638 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2018 ID=mRNA_2018|Name=jgi.p|Trimin1|163603|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1161bp|location=Sequence derived from alignment at Contig_26:1058478..1059638+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGAGGATTTTGAAAAGCTACTCGACGTCAACAAGGACATCTTCAGCTG
CCAAAACGGCGTGGTGGAGCTGGCCACTGCCACGCTTCGCCCGCGCGTGC
GGAAGGACATGCTGACCCGTGCAGTTAACATCGACTACAATGCTGACTCG
CCGCGCATCCCTGAAGTTATGCAGCTTCTAACCGACATCACCCTCGCCGC
GCCGAATCGCCTCAACCGCCCAGCACTGCTGGAGCGTCTGCTGCGCATAC
TGGGTTACTCCATCACGGGCCACGGGCGCGAGGAGATCATCGTATTCCTT
CTAGGCCGCAGCGCGCGCAACGGCAAGGGCATCATCGAGAGCCTGCTGCA
GCAGGTTCTCGGCTGCTTGTTCTACCAGGCGCCGCAGACTCTGAGCTTTC
TGACGGCATGCAAGGCGGTGTCGGCGGGTGCCGCGTCGTCGCACATGATG
GCGCTACGCGGTGCGCGCGTGGTCCACCTCGACGAGCTACCGGCGGGCGT
TGCGTTGGACGCGCAGATGATCAAGTACATCAGCGGCGGTGCTGACATCT
CGGGGCGAGAGCTGTTTGGCACGCAGACGTCGTTTAGCCCAACGGCAGTT
CCGTGGGCCAACACCAACGAGATGCCAGTCATCAAGGCGGAGCCGGCGAT
AATGCAACGCATTGAGATCAGCCCCTGCGATGCCAAGTTTCGCACGCCCG
GGGATGCCAAGTTCCCCTATGACGCCAATGATGAGACACACTTCATCAAG
AACACCAACCTGCGCGAAAACCTGCCCGTGGAGGCGTTCCTGGCAGTGGT
GGAGCAGGCGGCCAAGAGGTGGTACGAGGGTGGGCTGGGGGAGAAACCGG
CTTGCTGCAAGCTGGCATGCGACGCTTTTGCCGCCGAAAACGACACGCTG
CAAAGCTGGATCAACGACGAGTGTGAGCTGGGACCCAGAGACGGCGTCGA
TCCGGCGCTCATCTTGTGCAGCAGCGCGTTCAGCGGTTACAACAACTACC
GCGCGCGCCAGGAGCCGGCGCTACTGCCAATCAAGAAACGCGACATGCAC
GAGCAGATGGCGGCCAAGGGGTTTGCCAAGATAGACGACTACAGGAAGGC
GCACAGTCAGTACAATTTCAAATGCGTGTACGCCGGGCTCAAGTCTGCGG
GCGGCTTCTAG
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protein sequence of jgi.p|Trimin1|163603

>Trimin1|163603|e_gw1.26.134.1 ID=Trimin1|163603|e_gw1.26.134.1|Name=jgi.p|Trimin1|163603|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=387bp
DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADS
PRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFL
LGRSARNGKGIIESLLQQVLGCLFYQAPQTLSFLTACKAVSAGAASSHMM
ALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAV
PWANTNEMPVIKAEPAIMQRIEISPCDAKFRTPGDAKFPYDANDETHFIK
NTNLRENLPVEAFLAVVEQAAKRWYEGGLGEKPACCKLACDAFAAENDTL
QSWINDECELGPRDGVDPALILCSSAFSGYNNYRARQEPALLPIKKRDMH
EQMAAKGFAKIDDYRKAHSQYNFKCVYAGLKSAGGF*
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mRNA from alignment at Contig_26:1058478..1059638+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2018 ID=mRNA_2018|Name=jgi.p|Trimin1|163603|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1161bp|location=Sequence derived from alignment at Contig_26:1058478..1059638+ (Tribonema minus UTEX_B_3156 )
GACGAGGATTTTGAAAAGCTACTCGACGTCAACAAGGACATCTTCAGCTG CCAAAACGGCGTGGTGGAGCTGGCCACTGCCACGCTTCGCCCGCGCGTGC GGAAGGACATGCTGACCCGTGCAGTTAACATCGACTACAATGCTGACTCG CCGCGCATCCCTGAAGTTATGCAGCTTCTAACCGACATCACCCTCGCCGC GCCGAATCGCCTCAACCGCCCAGCACTGCTGGAGCGTCTGCTGCGCATAC TGGGTTACTCCATCACGGGCCACGGGCGCGAGGAGATCATCGTATTCCTT CTAGGCCGCAGCGCGCGCAACGGCAAGGGCATCATCGAGAGCCTGCTGCA GCAGGTTCTCGGCTGCTTGTTCTACCAGGCGCCGCAGACTCTGAGCTTTC TGACGGCATGCAAGGCGGTGTCGGCGGGTGCCGCGTCGTCGCACATGATG GCGCTACGCGGTGCGCGCGTGGTCCACCTCGACGAGCTACCGGCGGGCGT TGCGTTGGACGCGCAGATGATCAAGTACATCAGCGGCGGTGCTGACATCT CGGGGCGAGAGCTGTTTGGCACGCAGACGTCGTTTAGCCCAACGGCAGTT CCGTGGGCCAACACCAACGAGATGCCAGTCATCAAGGCGGAGCCGGCGAT AATGCAACGCATTGAGATCAGCCCCTGCGATGCCAAGTTTCGCACGCCCG GGGATGCCAAGTTCCCCTATGACGCCAATGATGAGACACACTTCATCAAG AACACCAACCTGCGCGAAAACCTGCCCGTGGAGGCGTTCCTGGCAGTGGT GGAGCAGGCGGCCAAGAGGTGGTACGAGGGTGGGCTGGGGGAGAAACCGG CTTGCTGCAAGCTGGCATGCGACGCTTTTGCCGCCGAAAACGACACGCTG CAAAGCTGGATCAACGACGAGTGTGAGCTGGGACCCAGAGACGGCGTCGA TCCGGCGCTCATCTTGTGCAGCAGCGCGTTCAGCGGTTACAACAACTACC GCGCGCGCCAGGAGCCGGCGCTACTGCCAATCAAGAAACGCGACATGCAC GAGCAGATGGCGGCCAAGGGGTTTGCCAAGATAGACGACTACAGGAAGGC GCACAGTCAGTACAATTTCAAATGCGTGTACGCCGGGCTCAAGTCTGCGG GCGGCTTCTAG
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Coding sequence (CDS) from alignment at Contig_26:1058478..1059638+

>mRNA_2018 ID=mRNA_2018|Name=jgi.p|Trimin1|163603|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1161bp|location=Sequence derived from alignment at Contig_26:1058478..1059638+ (Tribonema minus UTEX_B_3156 )
GACGAGGATTTTGAAAAGCTACTCGACGTCAACAAGGACATCTTCAGCTG
CCAAAACGGCGTGGTGGAGCTGGCCACTGCCACGCTTCGCCCGCGCGTGC
GGAAGGACATGCTGACCCGTGCAGTTAACATCGACTACAATGCTGACTCG
CCGCGCATCCCTGAAGTTATGCAGCTTCTAACCGACATCACCCTCGCCGC
GCCGAATCGCCTCAACCGCCCAGCACTGCTGGAGCGTCTGCTGCGCATAC
TGGGTTACTCCATCACGGGCCACGGGCGCGAGGAGATCATCGTATTCCTT
CTAGGCCGCAGCGCGCGCAACGGCAAGGGCATCATCGAGAGCCTGCTGCA
GCAGGTTCTCGGCTGCTTGTTCTACCAGGCGCCGCAGACTCTGAGCTTTC
TGACGGCATGCAAGGCGGTGTCGGCGGGTGCCGCGTCGTCGCACATGATG
GCGCTACGCGGTGCGCGCGTGGTCCACCTCGACGAGCTACCGGCGGGCGT
TGCGTTGGACGCGCAGATGATCAAGTACATCAGCGGCGGTGCTGACATCT
CGGGGCGAGAGCTGTTTGGCACGCAGACGTCGTTTAGCCCAACGGCAGTT
CCGTGGGCCAACACCAACGAGATGCCAGTCATCAAGGCGGAGCCGGCGAT
AATGCAACGCATTGAGATCAGCCCCTGCGATGCCAAGTTTCGCACGCCCG
GGGATGCCAAGTTCCCCTATGACGCCAATGATGAGACACACTTCATCAAG
AACACCAACCTGCGCGAAAACCTGCCCGTGGAGGCGTTCCTGGCAGTGGT
GGAGCAGGCGGCCAAGAGGTGGTACGAGGGTGGGCTGGGGGAGAAACCGG
CTTGCTGCAAGCTGGCATGCGACGCTTTTGCCGCCGAAAACGACACGCTG
CAAAGCTGGATCAACGACGAGTGTGAGCTGGGACCCAGAGACGGCGTCGA
TCCGGCGCTCATCTTGTGCAGCAGCGCGTTCAGCGGTTACAACAACTACC
GCGCGCGCCAGGAGCCGGCGCTACTGCCAATCAAGAAACGCGACATGCAC
GAGCAGATGGCGGCCAAGGGGTTTGCCAAGATAGACGACTACAGGAAGGC
GCACAGTCAGTACAATTTCAAATGCGTGTACGCCGGGCTCAAGTCTGCGG
GCGGCTTCTAG
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