mRNA_2017 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|50711
Unique NamemRNA_2017
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A835Z6G6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G6_9STRA)

HSP 1 Score: 537 bits (1383), Expect = 6.350e-192
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1 
Query:   22 MKLVRSRSVVAVAALATSEVVSRGSAFAVTPSSRGLRTLSQGRFTSINRRAIAAAVSLPTEPVRMLFGAFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            MKLVRSRSVVAVAALATSEVVSRGSAFAVTPSSRGLRTLSQGRFTSINRRAIAAAVSLPTEPVRMLFGAFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG
Sbjct:    1 MKLVRSRSVVAVAALATSEVVSRGSAFAVTPSSRGLRTLSQGRFTSINRRAIAAAVSLPTEPVRMLFGAFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 271
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A6H5JRH9_9PHAE (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRH9_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.930e-87
Identity = 140/253 (55.34%), Postives = 174/253 (68.77%), Query Frame = 1 
Query:  127 LRTLSQGRFTSINRRAIAAAVSLPTEPVR-----------------MLFGAFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            LR  S    +S   +A+ AAV+  + PV                  M    F KK ++Y  L+G AAEAA+AAL  +VP+KSE G DIATFAGGCFWG EL FQRVPGV++T VGYTQG V++P+Y +VCSGSTGHTE  QVYY+P +VS++ L   FF R++PTQVNGQG DRGTQYR+G+Y HT EQ   A +V + L     +PIATE++ A V++PAE YHQQYL+KGGR   PQSAEKG T+ IRCYG
Sbjct:   33 LRPSSAAGASSFAGKALPAAVAPRSSPVAAFTCADGSRGSRNSMGMMFSNPFKKKEVNYEELEGGAAEAARAALKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGADRGTQYRTGIYPHTKEQSDVALKVMDELRGNYKQPIATEIEGAKVYWPAELYHQQYLAKGGRNGMPQSAEKGATETIRCYG 285
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A6T5PGW5_HETAK (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PGW5_HETAK)

HSP 1 Score: 259 bits (662), Expect = 3.410e-82
Identity = 136/241 (56.43%), Postives = 165/241 (68.46%), Query Frame = 1 
Query:  160 INRRAIAAA----VSLPTEP--VRMLFGAFGK---------KTMDYTG-LQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            +NRRA+ A+       P  P  VR +   F K            +Y G L+G+A E  +AA+  +VPA S+ G  IATFAGGCFWG EL FQRVPGV+ T VGYTQG  ++P+Y  VCSG+TGHTE  QVYY+P++VS+  L   FF R +PT VNGQGND GTQYR+GVY HT +Q   A+ VF  L  + S+PIATELK A V++PAE YHQQYL KGGRF+ PQSAEKGCTD IRCYG
Sbjct:   42 VNRRAVPASRLAFADAPKTPRAVRSMAMIFDKIFGNNPGPPDVANYYGVLEGAAREQGEAAIAGEVPATSKAGHAIATFAGGCFWGLELAFQRVPGVVETSVGYTQGAQERPTYSGVCSGATGHTEAVQVYYNPEEVSFTQLCNVFFERTNPTTVNGQGNDFGTQYRTGVYTHTDQQMIEAQAVFTELKGKYSKPIATELKPAQVYWPAEKYHQQYLEKGGRFSSPQSAEKGCTDTIRCYG 282
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A1Z5KFI2_FISSO (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFI2_FISSO)

HSP 1 Score: 251 bits (642), Expect = 2.000e-79
Identity = 127/226 (56.19%), Postives = 153/226 (67.70%), Query Frame = 1 
Query:  169 RAIAAAVSLPTEPVRMLFG--AFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEG--WDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            R I  + + PT  +  LFG  AFG + + Y  L     E A+ A   K+PA SE      +ATFAGGCFWG EL +QRVPGV  T VGY QG  + P+Y+ VC+G+TGHTE   VYYDPK+  Y  L++ FF R+DPT VNGQG D G QYR+G+YFHTPEQEA A+  FE  AK+  +P+ATELKAA  F+PAE YHQQYL KGGRF  PQ A KG T+ IRCYG
Sbjct:   39 RVIPYSTTTPTMLLSKLFGGGAFGTERIAYQNLDHPGPELAQWAEQGKMPATSERDPHLALATFAGGCFWGLELAYQRVPGVQYTAVGYAQGPEEFPTYNQVCAGATGHTEAVMVYYDPKECDYSKLLDTFFDRIDPTTVNGQGRDFGKQYRTGIYFHTPEQEAIARARFEEEAKKYKKPMATELKAATPFWPAEKYHQQYLEKGGRFGMPQDASKGATETIRCYG 264
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: K8Z531_NANGC (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z531_NANGC)

HSP 1 Score: 244 bits (622), Expect = 2.570e-77
Identity = 120/195 (61.54%), Postives = 141/195 (72.31%), Query Frame = 1 
Query:  250 YTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            Y  L G A EA+KAAL   VPA S +G  IATFAGGCFWG EL FQRVPGV++T  GYTQG V +PSY +VCSG+TGHTE  QV++ P +VSY+ L++ F+ R+DP   NGQG DRGTQYR+G+Y HT  Q  AA +  E   K+ SRPI TE+K A VF+PAE  HQ YL KGGRF   QSA KGCTD IRCYG
Sbjct:    6 YQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A7S4K616_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K616_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.170e-76
Identity = 122/207 (58.94%), Postives = 153/207 (73.91%), Query Frame = 1 
Query:  223 GAFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDI--ATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENS-RPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            GA+  K +DY  L     E A+AAL+ +V A SE    +  ATFAGGCFWG EL FQR+PGV+ T VGYTQG+ ++P+YD V +G+TGHTE   VYYDP  VSY+ L++ FF RVDPT VNGQGNDRG QYR+GVYF+  +QE  A+  F+  A+  S RPIATEL+A ++F+PAE YHQ+YL +GGRF  PQSAEK C+D+IRCYG
Sbjct:   71 GAYESK-IDYEDLPHPCPELARAALEGRVVAVSEREPSLRAATFAGGCFWGLELYFQRLPGVVHTAVGYTQGREEEPTYDQVSAGATGHTEAVVVYYDPVDVSYEGLLDAFFERVDPTTVNGQGNDRGRQYRTGVYFNDEDQEGMARARFDEQARNRSPRPIATELRATSLFWPAEKYHQRYLERGGRFGTPQSAEKKCSDEIRCYG 276
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A7S0UGZ9_HEMAN (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UGZ9_HEMAN)

HSP 1 Score: 241 bits (615), Expect = 1.290e-75
Identity = 120/198 (60.61%), Postives = 145/198 (73.23%), Query Frame = 1 
Query:  241 TMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            T DY+ L+G AAE+A  A   +V  KSE G  IATF GGCFWG EL +QRVPGVI T VGY+QGKV+ PSY+ VCSG+TGHTE  Q+ YDP+ V+ K L E  F++++P   +  GNDRGTQYR GVY+H+ EQ  AAKEVF+++ KE   P+ TEL+AA VFYPAE YHQQYL KGGR    Q A+KGC D IRCYG
Sbjct:   49 TRDYSDLKGWAAESATYAKAGEVKEKSEAGHCIATFGGGCFWGVELLYQRVPGVIGTAVGYSQGKVEHPSYEAVCSGTTGHTEVVQLTYDPEVVTMKALTELLFTKINPKLKDQVGNDRGTQYRHGVYYHSDEQRVAAKEVFDKV-KEKHDPVYTELEAAGVFYPAEAYHQQYLEKGGRNGSGQCADKGCKDPIRCYG 245
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: L1JZF2_GUITC (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JZF2_GUITC)

HSP 1 Score: 238 bits (608), Expect = 5.170e-75
Identity = 118/209 (56.46%), Postives = 153/209 (73.21%), Query Frame = 1 
Query:  217 LFGAFGKKTMDYTGLQGS--AAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERL-AKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            LFG  GK+  +Y+ L+    AAEAA+ A + +V + S+ G  IATF GGCFWG EL +QRVPGV++T VGY QG+++ PSY+ VC+G+TGHTE  Q+ Y+PK+VS+K L +  F +++P+  +  GNDRG+QYR G+YFHTPEQ+A A+E  + + AK N  P  TEL+AA VFYPAE YHQQYL KGGRF   QSA KGC D IRCYG
Sbjct:    7 LFGGSGKR--EYSDLKAGTWAAEAAEYAKEGQVKSVSKAGHSIATFGGGCFWGIELVYQRVPGVVATAVGYAQGELEHPSYEMVCTGATGHTEVVQLTYNPKEVSFKQLCQVLFGKINPSLKDQVGNDRGSQYRHGIYFHTPEQKAEAEEAIQEVKAKLNGAPFYTELEAAKVFYPAEEYHQQYLEKGGRFGSKQSAAKGCNDPIRCYG 213
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A4D9CTX0_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTX0_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.400e-74
Identity = 120/208 (57.69%), Postives = 150/208 (72.12%), Query Frame = 1 
Query:  217 LFGAFGKKT-MDYTGLQG-SAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            +F A GK   +DY+ L G  A EAA+ AL   V  KS++G++IATFAGGCFWG EL +QRV GVI T VGYTQGK ++P+YD VCSG +GHTE  QV++DPK+VSY+ L +   +R++PT  N  GNDRGTQYR G+Y+H   QE  AK+V E    + S+PI TE   A V++PAE YHQ+YL KGGRF+  QSA KGCTD IRCYG
Sbjct:   69 IFNAAGKGDGIDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
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BLAST of jgi.p|Trimin1|50711 vs. uniprot
Match: A0A8J9S1A9_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S1A9_PHATR)

HSP 1 Score: 234 bits (598), Expect = 4.030e-74
Identity = 109/166 (65.66%), Postives = 127/166 (76.51%), Query Frame = 1 
Query:  337 IATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 834
            +ATFAGGCFWG EL +QRVPGV  T VGY QG    P+Y+ VC+GSTGHTE   VYY+P +  Y+ L++ FF RVDPT VNGQG DRG QYR+GVYFHTPEQE  A+  F     + +RP+A+ELKAAA F+PAE YHQQYL KGGRFNQPQ+A KG TD IRCYG
Sbjct:    5 LATFAGGCFWGLELAYQRVPGVEYTAVGYAQGPETNPTYNQVCAGSTGHTEAVMVYYNPDECRYEDLLDTFFERVDPTTVNGQGGDRGKQYRTGVYFHTPEQEQVAQARFAAEQPKYNRPMASELKAAAPFWPAEKYHQQYLEKGGRFNQPQNANKGATDTIRCYG 170
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|50711 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6G6_9STRA6.350e-192100.00Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
A0A6H5JRH9_9PHAE1.930e-8755.34Peptide-methionine (S)-S-oxide reductase n=2 Tax=E... [more]
A0A6T5PGW5_HETAK3.410e-8256.43Peptide-methionine (S)-S-oxide reductase n=1 Tax=H... [more]
A0A1Z5KFI2_FISSO2.000e-7956.19Peptide-methionine (S)-S-oxide reductase n=2 Tax=F... [more]
K8Z531_NANGC2.570e-7761.54Peptide-methionine (S)-S-oxide reductase n=3 Tax=M... [more]
A0A7S4K616_9STRA2.170e-7658.94Peptide-methionine (S)-S-oxide reductase n=1 Tax=O... [more]
A0A7S0UGZ9_HEMAN1.290e-7560.61Peptide-methionine (S)-S-oxide reductase n=2 Tax=H... [more]
L1JZF2_GUITC5.170e-7556.46Peptide-methionine (S)-S-oxide reductase n=2 Tax=G... [more]
A0A4D9CTX0_9STRA1.400e-7457.69Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]
A0A8J9S1A9_PHATR4.030e-7465.66Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:1044096..1049088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|50711|CE50710_447
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Preferred nameMSRA4
Descriptionpeptide-methionine (S)-S-oxide reductase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0225@1|root,KOG1635@2759|Eukaryota
Evalue8.59e-85
Seed ortholog2880.D7FRP8
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-00_003370.1
TranscriptId51033
TrackFilteredModels1
ProteinId50711
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|50711gene_2017Tribonema minus UTEX_B_3156 geneContig_26 1044096..1049088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|50711Trimin1|50711|CE50710_447Tribonema minus UTEX_B_3156 polypeptideContig_26 1044233..1049067 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2017_7exon_2017_7Tribonema minus UTEX_B_3156 exonContig_26 1044096..1044293 -
exon_2017_6exon_2017_6Tribonema minus UTEX_B_3156 exonContig_26 1044993..1045195 -
exon_2017_5exon_2017_5Tribonema minus UTEX_B_3156 exonContig_26 1045975..1046103 -
exon_2017_4exon_2017_4Tribonema minus UTEX_B_3156 exonContig_26 1046771..1046839 -
exon_2017_3exon_2017_3Tribonema minus UTEX_B_3156 exonContig_26 1047442..1047480 -
exon_2017_2exon_2017_2Tribonema minus UTEX_B_3156 exonContig_26 1048476..1048687 -
exon_2017_1exon_2017_1Tribonema minus UTEX_B_3156 exonContig_26 1048965..1049088 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2017UTR3_2017Tribonema minus UTEX_B_3156 three_prime_UTRContig_26 1044096..1044232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2017CDS_2017Tribonema minus UTEX_B_3156 CDSContig_26 1048965..1049067 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2017UTR5_2017Tribonema minus UTEX_B_3156 five_prime_UTRContig_26 1049068..1049088 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2017 ID=mRNA_2017|Name=jgi.p|Trimin1|50711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=974bp|location=Sequence derived from alignment at Contig_26:1044096..1049088- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTACGTTCACACAGCAGGACATGAAGCTGGTGCGCTCTCGCTCTGTCGT
GGCTGTCGCAGCTCTTGCAACATCCGAGGTCGTCTCGCGCGGCTCTGCGT
TTGCAGTGACTCCATCATCCCGAGGTCTGCGCACTCTGAGCCAAGGCAGG
TTCACTTCCATCAACAGGCGCGCGATCGCAGCAGCAGTCTCGCTACCCAC
CGAGCCCGTTCGGATGCTCTTTGGCGCTTTCGGAAAGAAGACAATGGACT
ACACCGGTCTGCAGGGGTCCGCCGCTGAGGCAGCCAAGGCGGCGCTGGAC
AAAAAAGTGCCCGCCAAGAGCGAGGAGGGCTGGGATATTGCAACATTTGC
CGGCGGGTGCTTTTGGGGCTCTGAGCTCCAATTTCAGCGCGTGCCCGGCG
TGATCAGCACGCATGTGGGATACACCCAGGGGAAGGTCGACCAGCCTTCG
TACGATGACGTGTGCTCCGGCAGCACCGGCCACACGGAGGGGTTCCAGGT
GTACTACGATCCCAAGCAGGTGTCGTACAAGACGCTAGTGGAGGAGTTCT
TCAGCCGCGTCGACCCGACGCAGGTCAACGGCCAGGGCAACGATCGCGGC
ACGCAGTACCGCTCGGGCGTCTACTTCCACACGCCAGAGCAGGAGGCGGC
CGCCAAGGAGGTCTTTGAGCGCCTCGCGAAGGAGAACTCGCGCCCCATCG
CGACGGAGCTCAAGGCCGCCGCGGTGTTCTACCCCGCGGAGCCGTACCAC
CAGCAGTACCTGTCCAAGGGCGGACGGTTCAACCAGCCGCAGAGTGCGGA
GAAGGGCTGCACGGACAAGATCCGCTGCTACGGCTGAGTGTAGCTGAATT
AGCCACTTTGTAAAGAAGCGCTCAGCACACATCCAGATGCGTGGTCCAGG
ATGCATCTGGGCTTACATGCACATCACATGCACATAACGAGGTCGTCAAT
GGAATTTGCTCATAAACGAAGCCG
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protein sequence of jgi.p|Trimin1|50711

>Trimin1|50711|CE50710_447 ID=Trimin1|50711|CE50710_447|Name=jgi.p|Trimin1|50711|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MKLVRSRSVVAVAALATSEVVSRGSAFAVTPSSRGLRTLSQGRFTSINRR
AIAAAVSLPTEPVRMLFGAFGKKTMDYTGLQGSAAEAAKAALDKKVPAKS
EEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSG
STGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGV
YFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKG
GRFNQPQSAEKGCTDKIRCYG*
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mRNA from alignment at Contig_26:1044096..1049088-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2017 ID=mRNA_2017|Name=jgi.p|Trimin1|50711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4993bp|location=Sequence derived from alignment at Contig_26:1044096..1049088- (Tribonema minus UTEX_B_3156 )
GCTACGTTCACACAGCAGGACATGAAGCTGGTGCGCTCTCGCTCTGTCGT
GGCTGTCGCAGCTCTTGCAACATCCGAGGTCGTCTCGCGCGGCTCTGCGT
TTGCAGTGACTCCATCATCCCGAGGTGAGGTTTGAGCTTTCTCCGCTGTA
CCAGCGCAGGAACAGAGTTTGTGCCGACGCCGTCGATGTGATGGCTTGCG
TAAATTACAAAGTATAACCACACATCACTCACGCAACCCCACATTGGCAA
GGTAGCACACAACTGCGCCCCAGGATTAAGGTGCGTAGTCCAGAAGAGGA
TGGATCACGTGTCGCACCTCGTGTTTTGCGACGCCGCGTGCATTCTACAG
TGGCTGCTTGAATTGCGCCTCTTGTCCACCATCTGCATCCGCCTTCTACA
GGTCTGCGCACTCTGAGCCAAGGCAGGTTCACTTCCATCAACAGGCGCGC
GATCGCAGCAGCAGTCTCGCTACCCACCGAGCCCGTTCGGATGCTCTTTG
GCGCTTTCGGAAAGAAGACAATGGACTACACCGGTCTGCAGGGGTCCGCC
GCTGAGGCAGCCAAGGCGGCGCTGGACAAAAAAGTGCCCGCCAAGAGCGA
GGAGGGCTGGGATGTGAGTGCCTTGAAGTGCAAGCCTTGAACTTGCAGCA
CCAACCTCAGTCTCTTTGTAGCAGGGTTCGTGCAACATGCCAACAGTTGT
TGGGTCAAACACTCAGCTGCTGCACATGCGGCATTGCGCATGGCAGCCTC
TTCCCGGAGGTTTGCTGCAATGTACTTGTGTCTGGCGTCAAAGCACTTCA
AAGCCGCTGGGTGTAATGCTAACAAATATCGCAGCTCAATCTTCGTGTCA
CACAAATGGCACCTTGGACGGGATACGCTCTGTTATCTTGTGATGCAGTC
GCTCTTGCATTGATCTCTGGTTGGAACTGCAAAGCTTAAATGAAAAAGTC
AAGTCTGTCAAGTAATTCAGCAACATCACTGTTAACCTCTACTTGAAAAG
TATTTTCGAAATGAGTGGCGTCACAGAGTCTCACTCTATGCACATGGTCG
GAGATTTGACCAGAGTGAGGCAACAAAAACTCAGATGCAACTTCCAAATA
GGGAGCATGCATTCAAAAGGTCCTCCAACTTTTTTGCAACAGTTCTGCAA
CTCTCTCGGAAGGTGAACGGTGCACCGACATCTATGTGAAAGCTCTGAAA
GCTCTGCGCCAGTTTGGGCGGCTCGTTTCAGTTTTTGCCCAGGCCACTGC
TCATACATGCGGCATATTTCACCTTCTTGTTTGCGGCATTGGTGGCAGCA
GGTCTGGAAAGGTCCTTGATTATACTTCTTTGCGGCATTGGTGGCAGCAG
ATCTGGCAAAAGGTCCTTGAGTACCACGACGCTCAGCACCATTGCAGAGT
TCACTTTTATATATAACTACGAGTGACCAGGTCCTCCGCTGCTCTCATCA
TGTGTTGGATGGGCGCGTCAGTCCTTCAACAAAGCTGTGGAGTCTGTATG
TGACTTTCCTCAAAAAGAGTCATCAATGCCGTTGTGGGACGCAAGGAGGT
AGTTTTTGTTGCGCTCACTCGACCTTTTCCGCTGTTCGCTTCATTATGTA
AATCACAGATTGCAACATTTGCCGGCGGGTGCTTTTGGGGCTCTGAGGCA
AGTGTCGTAGGATTGGCTCCCCATGCGCATTCAAGGGCCACGCAGTACCT
CTGATGCTTTGCTGGTTGTTCGAACAGTTTGCTCAAGTCACTGAACTAGA
TGCCTGTATGATGTGTTGGTTGTGTGTGTGCGTGTGTGTATGCAGAGCGG
ACTGTTGTAATGTAAGCTCGCGCCAAGTGCGCGTCGTTGCGCGCACGCAC
GCCTCGTGTGTGCGTGTGTGCATGTGTGTGTTTGTGTGTGTGTGTGTGTG
TGCGCTGTTCGTGTTGGCCTCTGTGTGCTCGCGCGCACGTGTATGTGTGT
GCGTTTGTGAGTGTGTCGGACAGTTGGTGGCCTGCTTCTGTCTGTGCAAC
TCGCAGTCTCGTCGCAGTTGTAGCTGCCAGTTGTCGCTGCCTTATTTCAC
AGGTCAACAGGCACTGCACGCCACTGCCCTGCAGCGTAAGCCCACGCTCT
TCGTTATCTGTACGGTCTCGTTGAGTTAGCTGTACTGCTGGGAACGCACG
CTAGCTCCCGCACTGGTTTATCTGTCTTGTTGTAATATGTGATCGCATGG
TACTGACGTGCTCACCACCCCCACGCGCCTCCCCTCCCTTCTCGCGCAGC
TCCAATTTCAGCGCGTGCCCGGCGTGATCAGCACGCATGTGGGATACACC
CAGGGGAAGGTCGACCAGGTCAGTAAGGCTTGACGGGATGGTGTGTGCGT
GTAAGATCGCGGGTGTTCTTGTGTTCGGTTCGCTGCTTTCCTGACCCGTC
GTGTCTCAGCAGCGTGCTTGCTCTCTGTTGCCTCGTGCTCAAACCACTCC
CTCCCGGCAAGCCCCTCATGTCTGGTGTGGACAGTATCGCAATGAACTGA
ACAGGTTCGTGCACAATGAACTGAACGCGTCTGTGCGCATTACCACCGCG
CCACCGCTGAGCATATTTTTCTTCCACATGGGGACCTATGCAGGCCTCTG
CAAGGCCTACATCATGTTTGCCGCGCCTTGCGCGCATGTGACACAGCGGA
CCCCATTTGCACCATAAGTGCAATATGTTTGACACTTTGACTTGCACATG
TTTGAATGATCAATGGCGCTTCAATTTAACATAATTCGAATAACGCCGTT
AGCATCAACGCAATATACACAGACGCTAAGTTTCACACGCACCGTAAGCA
TCGAATGTTGCAATATATGCAGGGGCATTCAGCTTCCTCGGCTGTCACAG
CTTCAGTCATCGGCATCACCTTCCATACCTGAGACCGGGCTTCTCTGTCC
CCGCATTTTAACACGTTGGCGTGCACGCCACTCAACCTGCACTCAATCCC
TCAACCCCCCCCTCTCCCCCCTCTCTCTGGTGCAGCCTTCGTACGATGAC
GTGTGCTCCGGCAGCACCGGCCACACGGAGGGGTTCCAGGTGTACTACGA
TCCCAAGCAGGTGTCGTACAAGACGCTAGTGGAGGAGTTCTTCAGCCGCG
TCGACCCGACGCAGGTGAGCTCTGCTCTTTCTTTTGGCTCCTCAGCTCTT
TCTCTGTACAGGAGGCAGTTGTTGTTGTGTGGTTTCTACCCTTGCGCTGG
CATCGGCGAGCGGGTAGGCGCTTTGCCGGCGCTGAGGTGTGTGGCTGCAC
CGGTCCTTGGCCTTGCGACATGTTTTCTGTTTGTCTTTTCGTGTGCGTGA
TGTGCGCATGTACTCATGGCTGTTGTGTGATGCAGCTCAGCACGCAACTG
CTTGTAGCCGTCACATATTGCTGCACGTGCTGCGGTCGGCGCCTCTCTCT
GACACAGTTTCACACAAGGTCTCCTTCCTCTTCTCAGCTCAACACAAGGC
TGCTTGTACTCTTTTAGGGGCGTGAGGCTTAGGCTGGATGCTGCTCATGC
TGAAAAAATCCATGGATAACATCACGTCAATGACAGTAAAAGTTGTGTAC
CTCAAGAAGACGGGCTGACACTAGGACAATTGCCACAGGCCTTCTTTGCG
CTGCGACGGGCTGTGACATGCCGCTTGGGGACTTCCGCTGGAGTGCAAGA
GGCGCAGCTCACCGCAGGCGCGCACTTATAGTAGGGACACACAACTCATC
ACCATACTGGCCAGCATCACAAGCGTCAAACCGCGCGCCACTCCCGCCAA
GCATGCATGCAGCTTACATCCCAGCCTCCACTCCGCACTCACTGCACCGC
TGTGCCCCCGTGCAACATGCGCCTCATGACCCCCGTCACTCGTTACAATG
CTCAACCCCCCCCCCCCCCCCCCTGTTTCTCCCCTGCGCGCAGGTCAACG
GCCAGGGCAACGATCGCGGCACGCAGTACCGCTCGGGCGTCTACTTCCAC
ACGCCAGAGCAGGAGGCGGCCGCCAAGGAGGTCTTTGAGCGCCTCGCGAA
GGAGAACTCGCGCCCCATCGCGACGGAGCTCAAGGCCGCCGCGGTGTTCT
ACCCCGCGGAGCCGTACCACCAGCAGTACCTGTCCAAGGGCGGACGGTGA
GGACGGTCCCTAGAGTTGAATCTGGAGTTAGAGTGAAGTTGCAACAGGAA
GGGGGTCTCCTCGGCCGCACGTTCAGACAGCGTGGCCGCACGTTCAGACA
GCGTGGTCGAGTCGGGTGTTTGTGTGGGAGGGGGACTTTGAATGTGCAAT
GTTGGTCTGCCATTTGGTTGCAAGGTCTAGGATTCTGGGCCCCGCAACGC
GTGTGTGCTTCTGAGGTGAAGTCAGTTGTCATTGCGGTGTGTTGTCAGCC
TGTCTATCGGGATGACCTGGCTCAGCAGTCTCCGCAGCTGACTCCGGCAG
AGGCGATCACTGCCCGGCTCGCGGAGTAGCTTATGAGCTGCTGTCGTACT
GCAAATTGATTTTGTGATAATGTGGTGCAGCAGCCTTTCACGAGCAGTCA
ACGCACCATGAAATTGACATGGTTACAGTGCTGCAGACTGGTGCCTGTCA
TGTTGGCACTTTTGTGTCAGGTATATTCAACATACCTTGTAGAGCGCAGC
AATGTAGCAAAAGCAGCCCGTGACAGTCACCGTCTGGCCTCAAGTAATTA
AAGTTCAAGATGCCTCGGAGAAGTACTACATACGTGTGGTCAATAAAACC
TGTCGCATTGTGAGGCACAATGCCTGTGCGCTCCCTCTGACCACATAAAA
ATGCTCTGCCTCACCTGTGCCGCCTGCCTGCCATGGTGTCTGCAGGTTCA
ACCAGCCGCAGAGTGCGGAGAAGGGCTGCACGGACAAGATCCGCTGCTAC
GGCTGAGTGTAGCTGAATTAGCCACTTTGTAAAGAAGCGCTCAGCACACA
TCCAGATGCGTGGTCCAGGATGCATCTGGGCTTACATGCACATCACATGC
ACATAACGAGGTCGTCAATGGAATTTGCTCATAAACGAAGCCG
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Coding sequence (CDS) from alignment at Contig_26:1044096..1049088-

>mRNA_2017 ID=mRNA_2017|Name=jgi.p|Trimin1|50711|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_26:1044096..1049088- (Tribonema minus UTEX_B_3156 )
ATGAAGCTGGTGCGCTCTCGCTCTGTCGTGGCTGTCGCAGCTCTTGCAAC
ATCCGAGGTCGTCTCGCGCGGCTCTGCGTTTGCAGTGACTCCATCATCCC
GAGGTCTGCGCACTCTGAGCCAAGGCAGGTTCACTTCCATCAACAGGCGC
GCGATCGCAGCAGCAGTCTCGCTACCCACCGAGCCCGTTCGGATGCTCTT
TGGCGCTTTCGGAAAGAAGACAATGGACTACACCGGTCTGCAGGGGTCCG
CCGCTGAGGCAGCCAAGGCGGCGCTGGACAAAAAAGTGCCCGCCAAGAGC
GAGGAGGGCTGGGATATTGCAACATTTGCCGGCGGGTGCTTTTGGGGCTC
TGAGCTCCAATTTCAGCGCGTGCCCGGCGTGATCAGCACGCATGTGGGAT
ACACCCAGGGGAAGGTCGACCAGCCTTCGTACGATGACGTGTGCTCCGGC
AGCACCGGCCACACGGAGGGGTTCCAGGTGTACTACGATCCCAAGCAGGT
GTCGTACAAGACGCTAGTGGAGGAGTTCTTCAGCCGCGTCGACCCGACGC
AGGTCAACGGCCAGGGCAACGATCGCGGCACGCAGTACCGCTCGGGCGTC
TACTTCCACACGCCAGAGCAGGAGGCGGCCGCCAAGGAGGTCTTTGAGCG
CCTCGCGAAGGAGAACTCGCGCCCCATCGCGACGGAGCTCAAGGCCGCCG
CGGTGTTCTACCCCGCGGAGCCGTACCACCAGCAGTACCTGTCCAAGGGC
GGACGGTTCAACCAGCCGCAGAGTGCGGAGAAGGGCTGCACGGACAAGAT
CCGCTGCTACGGCTGA
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