mRNA_2014 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|163514
Unique Name	mRNA_2014
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|163514 vs. uniprot
Match: A0A835YYK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.340e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  838 ARGTTYXXXXXXXXXXDATCCSALPEPRTNTCRLLTHWCQYKQLLHYESPPAR 996
            ARGTTYXXXXXXXXXXDATCCSALPEPRTNTCRLLTHWCQYKQLLHYESPPAR
Sbjct:  280 ARGTTYXXXXXXXXXXDATCCSALPEPRTNTCRLLTHWCQYKQLLHYESPPAR 332

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|163514 vs. uniprot

BLAST of jgi.p|Trimin1|163514 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YYK9_9STRA	7.340e-19	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_26	contig	Contig_26:1003318..1006791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|163514\|e_gw1.26.146.1
Hectar predicted targeting category	other localisation
TranscriptId	163836
Track	FilteredModels1
ProteinId	163514

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163514	gene_2014	Tribonema minus UTEX_B_3156	gene	Contig_26 1003318..1006791 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_2014_1	exon_2014_1	Tribonema minus UTEX_B_3156	exon	Contig_26 1003318..1004234 +
exon_2014_2	exon_2014_2	Tribonema minus UTEX_B_3156	exon	Contig_26 1006710..1006791 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_2014	CDS_2014	Tribonema minus UTEX_B_3156	CDS	Contig_26 1003318..1004234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163514	Trimin1\|163514\|e_gw1.26.146.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_26 1003318..1006791 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_26:1003318..1006791+
coding sequence from alignment at Contig_26:1003318..1006791+

spliced messenger RNA

>mRNA_2014 ID=mRNA_2014|Name=jgi.p|Trimin1|163514|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_26:1003318..1006791+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCAAACTGCTCAAGGAGCCACAGCAAATTGTAAAAGGCACGGCGG
AGGAAAGCGGTGCATGGTGTTGGGATGTGGTAATAGTGCTGTTGGAGCCA
CTGAGTACTGCATTGGACACGGCGGAGGCAAGAGATGCGTAGAACCAGGT
TGTGACAAAGCTGCCAGAGGAGCCTCAGAATATTGCGTTACCCATGGCGG
AGGTAAACGGTGCATTGAGCCCGGGTGTAGTAGGGTTGCTAGAGGGGTCA
CCGACCACTGTGCCTCACACGGGGGAGGTAAAAGGTGCATTGAGCCAGGC
TGTGGTAAGGGAGCTCAAGGAACCTCAGAATACTGTGTCGGACATGGTGG
AGGCAAACGGTGCATAGAAACCGGTTGTGGAAACTGTGCCAGAGGACCCT
CCGAGTACTGTGCTTCGCACGGTGGAGGGAAGAGGTGTGCAGAGTCTGGG
TGTGACAAGAGTGCTATAGGATCCACCGAGTATTGCACGAGGCACGGTGG
AGGTAAGAGGTGCATAGAGCTTGAGTGTGACAAAAGCGCTCGAGGAACCT
CAGAATACTGTGCTAGACATGGTGGCGGTAAGAAGTGCATTGAGAATGGG
TGTGGTAAGACTGCAATAGGATCCACCGACTACTGCATTGGACATGGTGG
GGGAAATAGGTGCATTGAGGCTGGGTGCGATAAGAGTGCTTTAAGAGCCA
CCGAGTATTGTGCTAAGCATGGTAGAGGTAATAAGTGCATTGAGCCCGGT
TGTGACAAGTGTGCTGTAGGGGACACCGAAAATTGCATAGGGCACGGTGG
AGGTAAGAGGTGCATCGAGATTGGGTGTGCCAAAAGTGCTCGAGGAACCA
CGTACTGCATTAGACATGGTGGCGGTCAACGCTGTGATGCGACTTGCTGC
TCCGCACTACCAGAACCCCGTACAAACACATGCAGATTACTGACACACTG
GTGCCAGTACAAGCAATTGTTGCACTATGAGTCCCCACCTGCTCGATGA

protein sequence of jgi.p|Trimin1|163514

>Trimin1|163514|e_gw1.26.146.1 ID=Trimin1|163514|e_gw1.26.146.1|Name=jgi.p|Trimin1|163514|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=333bp
MWQTAQGATANCKRHGGGKRCMVLGCGNSAVGATEYCIGHGGGKRCVEPG
CDKAARGASEYCVTHGGGKRCIEPGCSRVARGVTDHCASHGGGKRCIEPG
CGKGAQGTSEYCVGHGGGKRCIETGCGNCARGPSEYCASHGGGKRCAESG
CDKSAIGSTEYCTRHGGGKRCIELECDKSARGTSEYCARHGGGKKCIENG
CGKTAIGSTDYCIGHGGGNRCIEAGCDKSALRATEYCAKHGRGNKCIEPG
CDKCAVGDTENCIGHGGGKRCIEIGCAKSARGTTYCIRHGGGQRCDATCC
SALPEPRTNTCRLLTHWCQYKQLLHYESPPAR*

mRNA from alignment at Contig_26:1003318..1006791+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2014 ID=mRNA_2014|Name=jgi.p|Trimin1|163514|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3474bp|location=Sequence derived from alignment at Contig_26:1003318..1006791+ (Tribonema minus UTEX_B_3156 )
ATGTGGCAAACTGCTCAAGGAGCCACAGCAAATTGTAAAAGGCACGGCGG
AGGAAAGCGGTGCATGGTGTTGGGATGTGGTAATAGTGCTGTTGGAGCCA
CTGAGTACTGCATTGGACACGGCGGAGGCAAGAGATGCGTAGAACCAGGT
TGTGACAAAGCTGCCAGAGGAGCCTCAGAATATTGCGTTACCCATGGCGG
AGGTAAACGGTGCATTGAGCCCGGGTGTAGTAGGGTTGCTAGAGGGGTCA
CCGACCACTGTGCCTCACACGGGGGAGGTAAAAGGTGCATTGAGCCAGGC
TGTGGTAAGGGAGCTCAAGGAACCTCAGAATACTGTGTCGGACATGGTGG
AGGCAAACGGTGCATAGAAACCGGTTGTGGAAACTGTGCCAGAGGACCCT
CCGAGTACTGTGCTTCGCACGGTGGAGGGAAGAGGTGTGCAGAGTCTGGG
TGTGACAAGAGTGCTATAGGATCCACCGAGTATTGCACGAGGCACGGTGG
AGGTAAGAGGTGCATAGAGCTTGAGTGTGACAAAAGCGCTCGAGGAACCT
CAGAATACTGTGCTAGACATGGTGGCGGTAAGAAGTGCATTGAGAATGGG
TGTGGTAAGACTGCAATAGGATCCACCGACTACTGCATTGGACATGGTGG
GGGAAATAGGTGCATTGAGGCTGGGTGCGATAAGAGTGCTTTAAGAGCCA
CCGAGTATTGTGCTAAGCATGGTAGAGGTAATAAGTGCATTGAGCCCGGT
TGTGACAAGTGTGCTGTAGGGGACACCGAAAATTGCATAGGGCACGGTGG
AGGTAAGAGGTGCATCGAGATTGGGTGTGCCAAAAGTGCTCGAGGAACCA
CGTACTGCATTAGACATGGTGGCGGTCAACGCTGTGATGCGACTTGCTGC
TCCGCACTACCAGAACCGTCAGTAGCACAATACAAGGACCCTGCAAATGG
GATGCACATATGCACCTACAGAGCGCGATACCTTGTATCAACCGCTGACG
ATGAGACACGTTCTGTGCTCATGAAAGCATTTGGGTTCAAGAGGGATCTG
GTGATGCGAGGAGAAAGGGCATTCTACTACGAGATCAACAAACTGGTTCC
AATCCTACGCCACCTTGAGAAGGCGCTAGATGAGAGTATCATCTCTGCCA
TCCTCAAGGGAAAAAAGGACATCAGGCACCTACGTCCTGACTATTTTTTT
GCAATCAAGCACGAGGATGGACGAGTTTTCGGGTGGCACATCGAGTATGA
TGAGGATGACGATCACGAGGACAACGATGCTCGTCTCGAAGCAATTCATG
AGACGGTGTCTTGTGATGGTGGTGCGTGTGTGATCCGTTTCATGGGCAGG
AGGAGCAGTTTGCAAGCGTAGGGTGATCAATAAGGCTAGCGTGTATTACG
AAATCACGGATCACGGTCTTACCGTGGCTCATGAGGTCGCAGAGCTCATT
GAGGAGAGACTGCAGAGGGCGGAACACGGATTGTGTCCCTCTGATACAAG
AATGTATAAGGTGTACGTGAACGTCTAAGAACAAAACATGCAAATGCGAA
TCAGTGTGTGCAGTTGGTGCAATGATGTAAACTCATAAATGTCACCATGC
CAAGTGATGCGTGCTGATGACATAACATGCAGCTGCAGTAACAGTGATTG
CATAGATGCATGGTGGCATACAATGCAGGCGGATCACCTGAGTGAACAGG
TCCACAGACACTCACAACAGCAAGACACGAGACTGCAACCACAGGTAGTG
TGTGAAAGGAAATGTTGCAATTGAATTTGTAAAAGATGTTGCCGCGCAGA
AACATGCACTGTAACAGGCGCAGCTGCGGCACCGCAGCAAGTGGGTGCAA
GAGTCAAAAGCTTTAAATGGACACTAGACTACTCTGCAAGTCTGCTCGCG
GCGTGAAGTGTCGCCAAAGGGATCGCAAAAAGCGACGTGGCCTACGGCTA
GCAAAGAATGTGCCACACTACGCCGCTGTGCACTAAGCCGCTGTGCGCTA
AGGTCAACCATGTGCCAACACTGATGCACTGATGCTGCGGCTAATGGGCT
GATGCGCTGATGAACCGCCCTTCAGGCGGTACTGGCCGAAGGCCAGTCGC
TGCGGGACATGCTGCGGCTAATGGGCACAAGCTGCTCTGCGTGTCAAAGC
TGCACAGCTGCCTTACTTGAACCCGGGGGGGAAGAAAAAGATGCCAGGCG
GTGCGTTGCGAACAGCCTCAGGCACTGCTGTAGGGGGCACGACGCGCCCT
TGTGCAGGCTGCGGAGCTATAGCCTGGGCACCATACATGTGCGCCTGCAT
CATCTGCATGTGCACCATGTGTCGCTGCATAGCGTACATGTGGGCGAAGT
GCTGCTGCACCATGTTGAAAGGTACCACCGTTGGGGCAGCAGTAGGGGGC
GCTACGGGCTGCGGCGGAAGCTCGACACGAGTGCGCTTCGCTACCGGCAC
ATCAACATCAACACTTGACTCGCTGCGCTCCCTGCCGTGTATGATGCCCA
CCAGAGCCGCAATTTGCGCCTGGTGGGCCGCCGCCGCAGCCTGGGCCGCC
GCCGCCGCTGCCTCGTCGCGCCGCTGCATCTCGGCCATGAAGATTGCCAT
GAGGTCAGGCGCTGGTGCCGCCGCTGCCACCGCCGCTGGTGCCGCCGCCG
CTGCTGGTGCCGCCGCCGCTGCTGGTGCCGCCACCGCTGCTGGTGCCGCC
GCCGCTGCGGCCGCCATACGCTCTAGCCGCTCACCCTGCTCCTTCATCTG
CGCCAGCAGGGCTGCAATGGTGGGGTCAAGTGTCGGTGCCGCGGCGCTGC
CGGTCGCGATGCGCTGTGCGAGCGCCACCACTTCATCAGGCGTACTGGTG
ACCCTGGCGAGCAGAGACGTGTCACGGCCCCTCGACTGATTGTAGTGGGT
CATGCCCGCGGCATTTGATGAGTCGACCGCCGACAGATGCCGCGTGACTA
CAGTGGCAGCGAGCTGGTGGTGGCCGGTGTCCTCCAGCGCCCCCGCCAGT
GCGTACGCCGCAGTCAGTGAGGCATTCCTCATCGAGTAATGCCCCACCGC
GGAATGCGGAGGTGGATGCGGCCAATATCGTTCATGAGGTCGCCGAACGC
GCCCTTGTCCGCTTGGGGGCCCAGGCCGCTCAGGCCGTTCAGCAGGTCAG
GCGGCTCCTCTTCGAGGATGAGGGCGCGCAGCCGTCGGCAGACGAAGAGC
ACCATGCAGGCGACGCTGTGCAGCTCTGAGGGGCAGCTGATGGTCACGTG
CAGGTTGCCGTTGGCGGCACTGTTTCTGCCCGTGTGTGATGACGCCTGCT
TCTTGTCCAGCGGCGCATCGATGACCTGGCATCGCACAAGCATATGGACA
CGGTAAATGAATATGTGAGTGACCTATTCATTGAGACCTGAGCCGTACAA
ACACATGCAGATTACTGACACACTGGTGCCAGTACAAGCAATTGTTGCAC
TATGAGTCCCCACCTGCTCGATGA

Coding sequence (CDS) from alignment at Contig_26:1003318..1006791+

>mRNA_2014 ID=mRNA_2014|Name=jgi.p|Trimin1|163514|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=999bp|location=Sequence derived from alignment at Contig_26:1003318..1006791+ (Tribonema minus UTEX_B_3156 )
ATGTGGCAAACTGCTCAAGGAGCCACAGCAAATTGTAAAAGGCACGGCGG
AGGAAAGCGGTGCATGGTGTTGGGATGTGGTAATAGTGCTGTTGGAGCCA
CTGAGTACTGCATTGGACACGGCGGAGGCAAGAGATGCGTAGAACCAGGT
TGTGACAAAGCTGCCAGAGGAGCCTCAGAATATTGCGTTACCCATGGCGG
AGGTAAACGGTGCATTGAGCCCGGGTGTAGTAGGGTTGCTAGAGGGGTCA
CCGACCACTGTGCCTCACACGGGGGAGGTAAAAGGTGCATTGAGCCAGGC
TGTGGTAAGGGAGCTCAAGGAACCTCAGAATACTGTGTCGGACATGGTGG
AGGCAAACGGTGCATAGAAACCGGTTGTGGAAACTGTGCCAGAGGACCCT
CCGAGTACTGTGCTTCGCACGGTGGAGGGAAGAGGTGTGCAGAGTCTGGG
TGTGACAAGAGTGCTATAGGATCCACCGAGTATTGCACGAGGCACGGTGG
AGGTAAGAGGTGCATAGAGCTTGAGTGTGACAAAAGCGCTCGAGGAACCT
CAGAATACTGTGCTAGACATGGTGGCGGTAAGAAGTGCATTGAGAATGGG
TGTGGTAAGACTGCAATAGGATCCACCGACTACTGCATTGGACATGGTGG
GGGAAATAGGTGCATTGAGGCTGGGTGCGATAAGAGTGCTTTAAGAGCCA
CCGAGTATTGTGCTAAGCATGGTAGAGGTAATAAGTGCATTGAGCCCGGT
TGTGACAAGTGTGCTGTAGGGGACACCGAAAATTGCATAGGGCACGGTGG
AGGTAAGAGGTGCATCGAGATTGGGTGTGCCAAAAGTGCTCGAGGAACCA
CGTACTGCATTAGACATGGTGGCGGTCAACGCTGTGATGCGACTTGCTGC
TCCGCACTACCAGAACCCCGTACAAACACATGCAGATTACTGACACACTG
GTGCCAGTACAAGCAATTGTTGCACTATGAGTCCCCACCTGCTCGATGA