mRNA_1982 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A835YZA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA1_9STRA) HSP 1 Score: 428 bits (1101), Expect = 5.190e-152 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 Query: 1 MLAVWQLAAAEGDVVGKTQITVEGEECNIGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATFNAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRAKRANLSTERINALNAALFSWEGKYGMRDE 618 MLAVWQLAAAEGDVVGKTQITVEGEECNIGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATFNAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRAKRANLSTERINALNAALFSWEGKYGMRDE Sbjct: 1 MLAVWQLAAAEGDVVGKTQITVEGEECNIGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATFNAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRAKRANLSTERINALNAALFSWEGKYGMRDE 206
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A835YMR6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR6_9STRA) HSP 1 Score: 208 bits (530), Expect = 9.570e-61 Identity = 100/202 (49.50%), Postives = 133/202 (65.84%), Query Frame = 1 Query: 1 MLAVWQLAAAEGDVVGKTQITVEGEECNIGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATFNAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRAKRANLSTERINALNAALFSWEGKYG 606 M A+W+LA +GD++ T+ITV+GEE +GIWQ NQR ++ LS +RVA L++AG +P+QPWDVN+ AWRLA EG + Q +TYTMGGE F VG WIK QR AAGTLSA+R L + + D W+A+F AW A +G ++ RTSV ++G++ VG WQ R ++ L ER+N LN A F WEGKYG Sbjct: 392 MFAMWKLAREQGDIIRTTRITVDGEEYAVGIWQSNQRTLIKNSMLSDERVATLKEAGFKTVCRPRQPWDVNFNAWRLACTEGAVGQRTTYTMGGEEFAVGLWIKHQRKADAAGTLSAQRSAMLKTVPQ-SSMLDAEWNASFKAWCMARDRGGMSKRTSVEMEGKQCEVGAWQANLRKRKDLLPNERVNKLNQAGFRWEGKYG 592
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A419GY01_9BACT (Uncharacterized protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A419GY01_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 4.490e-15 Identity = 53/177 (29.94%), Postives = 76/177 (42.94%), Query Frame = 1 Query: 85 IGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPK---QPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATFNAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRA--KRANLSTERINALNAALFSWEGK 600 +G WQ NQR Y+++ L +R+ +LE+ G + S + K +PWD Y + A A E F +G W QR + LS ++I +L I +E + F Q E YN+G WQN QRA K+ LS +RI L F W+ K Sbjct: 24 LGSWQSNQRYYYKNSKLDTERIKRLEEIGFIWSEKRKFMLKPWDFWYGLTLICKEHTSNANAPHDYKTPEGFYLGRWQSNQRKNYKKNVLSHDKIKRLEDIGFKWTPFEEAFEKGFQETLRYKEQTDDANVLQSYKTSENYNLGTWQNTQRANYKKGILSADRIKRLEEIGFKWKLK 200
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A1Y6GFX8_9BACI (Superfamily II DNA or RNA helicase n=1 Tax=Bacillus sp. OV166 TaxID=1882763 RepID=A0A1Y6GFX8_9BACI) HSP 1 Score: 75.9 bits (185), Expect = 1.910e-12 Identity = 57/187 (30.48%), Postives = 82/187 (43.85%), Query Frame = 1 Query: 73 EECNIGIWQQNQRAYWRDGTLSADRVAKLEKAGM------LKSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATFNAWRTAHAQ---GKVTARTSVIIDGEKYN--VGNWQNQQRAKRAN--LSTERINALNAALFSWE 594 E ++ W NQR Y++ GTLS +RV +L + G LK + ++ W+ Y+ L + + S E + WI QR Y+ GTLS ER+ +L + I W A N W Q K S++ G K N + NW +QR + LS ERI LN F W+ Sbjct: 728 ENPSLASWISNQRTYYKTGTLSQERVERLNELGFVWGRGDLKKINLEEQWEEKYQ--ELLAFKEKHGHCSVPQGFKENPSLASWISNQRTYYKTGTLSQERVERLNELGFI-------WEAFENQWEKNFQQLISFKDKYGHSLVPKGYKENPALANWIAKQRISYNDRTLSQERIERLNELGFIWD 905
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A117Q0Y2_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces yokosukanensis TaxID=67386 RepID=A0A117Q0Y2_9ACTN) HSP 1 Score: 72.4 bits (176), Expect = 3.020e-11 Identity = 54/174 (31.03%), Postives = 80/174 (45.98%), Query Frame = 1 Query: 85 IGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNY-EAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATF-NAWRTAHAQGKVTARTSVIIDGEKYNVGNW-QNQQRAKRANLSTE-RINALNAALFSWE 594 IG W QR +R G LSADR+A L++ GM+ + W NY EA G + ++T +G WI +QR + AG LS E+I L I + D+ W + +A QG + S + + + +G W NQ+RA+R E +I AL W+ Sbjct: 580 IGQWIGWQRMAYRQGKLSADRIAALDQLGMVWD-KALTAWQDNYGEAQAYYDERGDLLVPGSHTASSGC-SLGTWIARQRKDYEAGRLSTEQIVLLDEIGMVWRPLDDAWQQAYQHACAYRERQGHLDV-PSTYVTSDGFRLGTWIANQRRARREERLPEVKIRALEVLGVVWD 750
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: UPI0015D70749 (helicase associated domain-containing protein n=1 Tax=Chlamydia suis TaxID=83559 RepID=UPI0015D70749) HSP 1 Score: 72.0 bits (175), Expect = 4.000e-11 Identity = 48/176 (27.27%), Postives = 81/176 (46.02%), Query Frame = 1 Query: 85 IGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNY-EAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATF---NAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRA--KRANLSTERINALNAALFSWE 594 +G+W +QRA +++G LS D++A+L++ G + V ++ W+ N+ E R G Y + +G W QR + LS +RI +L I + + +E W F ++ H KV R D +G+W + QR K+ LS ++I L F W+ Sbjct: 511 LGVWVSHQRAGFKEGKLSEDKIARLKELGFVWDVF-EEVWEKNFLELQRFREEHGHCKVPQRYPQNPD---LGSWASVQRKTFKSSELSEDRIARLEEIGFVWDVTEEAWEKNFLELKRFQEEHGHCKVPQRYPQNPD-----LGSWVSTQRVDFKKGKLSEDKIERLEELGFVWD 677
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A100WCY0_9MYCO (Putative helicase n=3 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A100WCY0_9MYCO) HSP 1 Score: 69.3 bits (168), Expect = 5.160e-11 Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = 1 Query: 82 NIGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKH-IGNKRDETWSATFNAWRTAHAQGKVT--ARTSVIIDGEKYNVGNWQNQQ 525 ++G+W NQR +R+ TL AD++ +LE Q WD + A A+ + GG +G W+ QR + G L+AERI +L A+ + + R TW A F A R A+ T R V DG + +G+W ++Q Sbjct: 26 DLGMWVANQRRAYRESTLGADQIERLELLPGWVWEPHSQRWDEMFRAVATHLDTDQEIPAAAVSEGGHP--LGAWVGAQRVAYRRGALTAERIARLEALPGWVWSYRQSTWEAGFEALRRYAAEHGRTDVPRDHVTADG--FRLGDWVHRQ 172
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: UPI001E2C3BD3 (Helicase associated domain protein n=1 Tax=Chlamydia suis TaxID=83559 RepID=UPI001E2C3BD3) HSP 1 Score: 70.1 bits (170), Expect = 1.960e-10 Identity = 47/175 (26.86%), Postives = 80/175 (45.71%), Query Frame = 1 Query: 85 IGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNY-EAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATF---NAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRA--KRANLSTERINALNAALFSW 591 + W NQRAY+++G L+ +RVA+LE+ G + V K+ W+ N+ E R G Y + ++ W+ KQR+ G L+ +++ +L + + N E W F +R H V + + ++G W + QRA K L+ ++I L F W Sbjct: 995 LASWVSNQRAYFKEGKLAENRVARLEEIGFVWRVL-KEAWEENFLELQRFREEHGHCKVPEGYP---QNPQLASWVSKQRSDFKKGKLAEDKVARLEELGFVWNVLKEAWEENFLELQRFREEHGHCNVPHKYP-----QNPSLGVWVSHQRADFKEGKLAEDKIARLEEIGFVW 1160
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: UPI001178A55A (helicase associated domain-containing protein n=2 Tax=Chlamydia suis TaxID=83559 RepID=UPI001178A55A) HSP 1 Score: 69.3 bits (168), Expect = 2.320e-10 Identity = 53/187 (28.34%), Postives = 75/187 (40.11%), Query Frame = 1 Query: 73 EECNIGIWQQNQRAYWRDGTLSADRVAKLEKAGMLKSVQPKQPWDVNYEAW--------RLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATF---NAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRA--KRANLSTERINALNAALFSWE 594 E + W NQRA +++G LS DR+A+LE+ G + WDV EAW R G Y E ++ W+ QRA G LS + I +L I + + +E W F ++ H V D +G+W QR K LS +RI L F W+ Sbjct: 64 ENPQLASWVSNQRADFKEGKLSEDRIARLEEIGFV--------WDVTEEAWEENFLELKRFQEEHGHCKVPQRYP---ENPQLASWVSNQRADFKEGKLSEDGIARLEEIGFVWDVTEEAWEEHFLELKRFQEEHGHCNVPRWYPENPD-----LGSWVKAQRKTFKSGELSEDRIARLEELGFVWD 234
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Match: A0A1H8YPJ6_9PSEU (Helicase conserved C-terminal domain-containing protein n=1 Tax=Amycolatopsis saalfeldensis TaxID=394193 RepID=A0A1H8YPJ6_9PSEU) HSP 1 Score: 68.6 bits (166), Expect = 6.310e-10 Identity = 53/182 (29.12%), Postives = 81/182 (44.51%), Query Frame = 1 Query: 82 NIGIWQQNQRAYWRDGTLSADRVAKLEKAGML------KSVQPKQPWDVNYEAWRLASAEGPIAQASTYTMGGETFKVGFWIKKQRAYHAAGTLSAERITKLAAIKHIGNKRDETWSATF---NAWRTAHAQGKVTARTSVIIDGEKYNVGNWQNQQRAKRA--NLSTERINALNAALFSWE 594 N+ W QNQR Y +G+LSA+R+A L K G L K + ++ W Y +++A G S G T + W+ Q + G L ER L AI +++ TW A + +A+R KV + D + +W+N+QR+ R L + I LN F W+ Sbjct: 869 NLYAWCQNQRGYRNNGSLSAERIALLNKIGFLWDLEQEKKARDRELWMRRYN--EVSAAMGEKKHPSRLPSGRSTERT--WLDNQAVAYRKGNLDPERRELLEAIGVTTDQKWATWLANYEELDAFRREEGHFKVPEDYRTVDDVA---LASWKNRQRSFRNLDKLGDKEIALLNKIGFPWD 1043 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163634 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1982 ID=mRNA_1982|Name=jgi.p|Trimin1|163634|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=621bp|location=Sequence derived from alignment at Contig_26:689863..690483- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTCGCAGTGTGGCAGCTGGCTGCGGCTGAGGGTGATGTTGTTGGAAAback to top protein sequence of jgi.p|Trimin1|163634 >Trimin1|163634|e_gw1.26.206.1 ID=Trimin1|163634|e_gw1.26.206.1|Name=jgi.p|Trimin1|163634|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp MLAVWQLAAAEGDVVGKTQITVEGEECNIGIWQQNQRAYWRDGTLSADRVback to top mRNA from alignment at Contig_26:689863..690483- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1982 ID=mRNA_1982|Name=jgi.p|Trimin1|163634|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=621bp|location=Sequence derived from alignment at Contig_26:689863..690483- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:689863..690483- >mRNA_1982 ID=mRNA_1982|Name=jgi.p|Trimin1|163634|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=621bp|location=Sequence derived from alignment at Contig_26:689863..690483- (Tribonema minus UTEX_B_3156 )back to top |