mRNA_1973 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A835Z8B2_9STRA (Putative cysteine protease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B2_9STRA) HSP 1 Score: 650 bits (1677), Expect = 1.860e-235 Identity = 311/333 (93.39%), Postives = 322/333 (96.70%), Query Frame = 1 Query: 1 MGARTIAVAAVVGVCLGVLLTLLYINRRRIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA 999 MGARTIAVAAVVGVCLGVLLTLLYINRRRIY AVAAA P+DLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCW H+GCN GGSPE TYDLPQLT+AGIPLEEEFPY ATDTAPCKAITEGVLRVRT+KNTGRDLC+DPATVPE+VRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEV+G+ +E VN+AEPGFDD YWVVRSSWG+NWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPES KDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA Sbjct: 1 MGARTIAVAAVVGVCLGVLLTLLYINRRRIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA 333
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A836CH74_9STRA (FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH74_9STRA) HSP 1 Score: 386 bits (991), Expect = 2.300e-131 Identity = 176/312 (56.41%), Postives = 234/312 (75.00%), Query Frame = 1 Query: 64 LLYINRRRIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGAR-GIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNH 996 LL I +R + V LP+YFKW+E++L+PVRNQ+GCA+CW++SVCDM++D++NL++GG +G N LS QYL+SC+ H GC++G SPE YDLPQLTE GIPLE FPY A+DT C +G+ RV+T+K+T D+C++P TV + +Q VI+ NIV MK+AL PIVGTLRVH D+Y YDG +IY VTPGS IGYHAV ++GY D + N EPGF +GYWV +SSWG +WGA+ G + GF YVKMG NEADIESRAS C+V +P+ KDA+AATD+ M Y+SY++YV DP+R +F+G++ H Sbjct: 3 LLIIYKRHSIRRVIGLGSVGLPSYFKWREKWLMPVRNQRGCASCWSISVCDMLADSLNLKTGGAYGLNPLSSQYLLSCYRGHLGCDIGDSPENVYDLPQLTEQGIPLESAFPYQASDTLACPKFADGIQRVKTVKSTAEDICLEPNTVVFTSKQDVINRNIVNMKRALQRSPIVGTLRVHHDVYNYDGKSIYTVTPGSPLIGYHAVLIVGYADANANTHEPGFSEGYWVAKSSWGNSWGAQDGDKRGFIYVKMGVNEADIESRASRCDVVVPDELKDAVAATDMTQMAYSSYSEYVNDPDRFNFLGSVKSAH 314
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A835YX55_9STRA (Putative cysteine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX55_9STRA) HSP 1 Score: 336 bits (861), Expect = 3.230e-111 Identity = 169/322 (52.48%), Postives = 215/322 (66.77%), Query Frame = 1 Query: 25 AAVVGVCLGVLLTLLYINRRRIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAM 984 A V+ + VLL Y R + A LP+Y K+KE+FL+PVR+Q+ CAACW+ SV DMM+DT+N ++ G +G+ LS QYL+SC H+GC VGGSPE YDLPQLT+AG PL+ + PY +T PC+ + VLRVRT+ NT LC DP R I N+ MK+ALL GPIVGTLRV DLY Y G I++ P S+ GYHAVE++G+CDE+VNWAEPGFD YW+VRSSWG +WG +G+RYG+AYV MG N ADIESRASVC VE P + ++ T RY SY YV+DPER +F+G + Sbjct: 12 AVVLALTCAVLLAFAY--RSASFATPVADDGAPLPSYLKYKEKFLMPVRDQRCCAACWSFSVADMMADTLNAQTAGAFGKRPLSAQYLLSCSSAHRGCEVGGSPEDVYDLPQLTDAGCPLDADLPYEGKET-PCRPLPPDVLRVRTVPNTAVSLCDDPDRALPGTRAATIRRNVRNMKRALLQYGPIVGTLRVTGDLYAYRGDGIFRGDPASKFYGYHAVEIVGWCDENVNWAEPGFDGAYWIVRSSWGFDWGVPKGMRYGWAYVTMGENCADIESRASVCRVEFPMALEEVRRRTPTSAARYESYEHYVDDPERENFIGGL 330
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A836CER7_9STRA (FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER7_9STRA) HSP 1 Score: 305 bits (780), Expect = 4.360e-99 Identity = 152/296 (51.35%), Postives = 198/296 (66.89%), Query Frame = 1 Query: 124 LPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDD-GYWVVRSSWGENWGAR-GIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAK 1002 LP+Y K+KER+L+PVR+Q CAACW+ SV DMM+DT+N+ + G +G+ LS QYL+SC H+GC+VGGSPEA Y+LPQ+T+ G PL+ + PY T CK + RVRTIKNT DLC DP+ R I N+ MK+AL+ GPIVGT+RV EDLY Y IY+ P S+ +GYHA+E+IG+C E+VN EPGFD +W+ RSSWG WG G+ GFA+++MG N DIESRASVC V P+ T + +RY SYT Y +DPER +F+ A+ HAK Sbjct: 35 LPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGGYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLDADLPYEGKVTE-CKQLPPDAFRVRTIKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPTSKLVGYHAIEIIGWCCEAVNIREPGFDSPAFWICRSSWGVYWGVPPGVSSGFAFIEMGANVCDIESRASVCRVNFPKELAAIAKKTPLTEVRYESYTDYADDPERQNFIDAV---HAK 326
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A836CC90_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC90_9STRA) HSP 1 Score: 274 bits (701), Expect = 8.410e-87 Identity = 145/315 (46.03%), Postives = 191/315 (60.63%), Query Frame = 1 Query: 85 RIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHD-HQGCNVGGSPEATYDLPQLTE--AGIPLEEEFPYTATDTAPCKAITE----GVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALL-NGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAK 1002 RI + A+ E LP+YFK+ E L P R+Q GCA+CWA +VCDM +D +NLR+ G WG LSPQYL+SC Q C GG PE + P T GIPLE E PY A D PC A + G +RVR + LC DP+ +R + N+ MK+A++ +GP+VGTLRV EDLY Y IY+ P S +GYHAV ++G+CD VN AEPGFD YWV++SSWG++WG G+R G+AYV MG N A++ESRASV +P+ +A Y SY Y DP+R +F+GA+ + HA+ Sbjct: 38 RIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRA-DEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQK--RTAYWSYDDYARDPDRDNFLGAVARAHAE 349
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: D2VZV5_NAEGR (Cathepsin B-like cysteine proteinase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VZV5_NAEGR) HSP 1 Score: 100 bits (248), Expect = 3.020e-20 Identity = 69/226 (30.53%), Postives = 111/226 (49.12%), Query Frame = 1 Query: 121 DLPTYFKWKERF---LVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARG 789 D PT F +E++ + ++NQK C +CWA S +++D ++SGG+ + LSPQ+++SC + GCN GG +AT+ L G E PY + G + +K+ G P S R+ +I+ KA NGPI + V+ D Y Y + V+ R +G HAV+++G+ +S + YW+ +SWGE+WG +G Sbjct: 124 DFPTQFDAREQWPQCIRSIKNQKNCGSCWAFSASSVLADRFCIKSGGKVNVD-LSPQFMVSCSGQNNGCN-GGFFDATWRF--LVSVGTVSEACVPYVSFG---------GAVPACNVKSCGVPGQKSPFYRAGSARKLEGMLDIMADLKA--NGPIQVAMGVYRDFYSYKSGVYHHVS--GRYVGGHAVKIVGWGYDSASKLP------YWICANSWGEDWGIKG 326
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: CATB2_GIAIN (Cathepsin B-like CP2 n=4 Tax=Giardia intestinalis TaxID=5741 RepID=CATB2_GIAIN) HSP 1 Score: 91.3 bits (225), Expect = 2.250e-17 Identity = 75/254 (29.53%), Postives = 115/254 (45.28%), Query Frame = 1 Query: 118 EDLPTYFKWKERF---LVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPAT---VPESVRQQVIDANIVRMKKAL-LNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDG--YWVVRSSWGENWGARGIRYGFAYVKMGCNEADIESRA 852 +D+P F ++E + + V +Q GC +CWA S D + +G SPQY++SC H CN G P LT+ G +E PY + T T++ T C D ++ + + + +I M KAL +GP+ VH D Y+ +YQ T G + G HAVE++GY + DDG YW++++SWG +WG G F ++ G N+ IE +A Sbjct: 73 DDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATFGDRRCV-AGLDKKPVKYSPQYVVSCDHGDMACNGGWLPNV---WKFLTKTGTTTDECVPYKSGST--------------TLRGTCPTKCADGSSKVHLATATSYKDYGLDIPAMMKALSTSGPLQVAFLVHSDFMYYES-GVYQHTYGYME-GGHAVEMVGYGTD---------DDGVDYWIIKNSWGPDWGEDGY---FRMIR-GINDCSIEEQA 293
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A2G9P5Z3_9ARCH (Pept_C1 domain-containing protein n=1 Tax=Candidatus Diapherotrites archaeon CG10_big_fil_rev_8_21_14_0_10_31_34 TaxID=1974406 RepID=A0A2G9P5Z3_9ARCH) HSP 1 Score: 93.2 bits (230), Expect = 4.170e-17 Identity = 79/257 (30.74%), Postives = 117/257 (45.53%), Query Frame = 1 Query: 121 DLPTYFKWKER----FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDL--PQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDAN------IVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDG--YWVVRSSWGENWGARGIRYGFAYVKMGCNEADIES 846 DLP +F W+++ ++ VR+Q C +CWA + +N LS Q L+SC+H GC+ G E ++ G+ E FPYTAT+ N D VD +++ Q ID N I +K+ALL+ GPI ++V ED Y G IY T +GYHAV ++G+ G DG YW+V++SWGENWG +G Y ++ ++ I+S Sbjct: 112 DLPAFFDWRDQHSYNYITEVRDQSSCGSCWAFGAIATLEGHVNAYYNNPNLDLDLSEQDLVSCFHG-TGCS-GAYTEQIEEIFSDYFQNIGVAKETCFPYTATN--------------NNCSNKCSDWQVDAW---KTLGYQSIDLNGSLDERINNLKQALLDYGPIEVGMQVFEDFPDYGG-GIYSHTV-EWILGYHAVTIVGF----------GKYDGMNYWIVKNSWGENWGEQG------YFRIAAGDSGIDS 331
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A660XD16_9BACT (Pept_C1 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A660XD16_9BACT) HSP 1 Score: 91.7 bits (226), Expect = 1.310e-16 Identity = 78/292 (26.71%), Postives = 127/292 (43.49%), Query Frame = 1 Query: 118 EDLPTYFKWKER---FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARG--------IRYGF--AYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVED 954 E+LP++F W++ ++ PV+NQ +CWA S + + + LS Q+LISC +D N G T D L G+P E FPY A D +PC N D + T P I +K+A+ P+ +++V+ D Y Y +Y+ + + G HAV ++G+ D YW+V++SWG NWG G + +G+ YV G E + S E+E+ + D ++ DT+ +T+ + V + Sbjct: 84 ENLPSHFDWRDNNGNWVTPVKNQNPAGSCWAFSAAGQLESWYRITTNDPDTMIDLSEQFLISC-NDEATANGGYFTGYTLDFI-LDVGGVPSESCFPYKADD-SPCS-------------NACEDWQSEALTFPGWGYVTGSKPLIDNIKQAVYQHPLSVSMQVYSDFYNYTS-GVYKRVSETNE-GGHAVVIVGWDDAEQ----------YWIVKNSWGPNWGEDGYFRITWDDMEFGYNGVYVYNGMTEDALA--ISENEIELDMTVGDVLS----DTITFTNISSDVAE 341
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A7W0H289_9ACTN (Peptidase C1 n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0H289_9ACTN) HSP 1 Score: 88.2 bits (217), Expect = 2.320e-16 Identity = 67/222 (30.18%), Postives = 102/222 (45.95%), Query Frame = 1 Query: 154 FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSP---EATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARG---IRYG 801 ++ P+R+Q+ C +C A + C ++ T+ ++ G LS L C +G G + L + G+P E FPYT+ D A C A ++ R R + TG + E V + GP + ++ V+ED Y G A Y+ G+ +IG HAV ++GY D PG GYW++++SWGENWG G I YG Sbjct: 76 YVTPIRDQEQCLSCVAFAACAVVEGTLRVQEHGPDLEVDLSEACLYYCVAAGEGRTCFGETGGWQPKKALAAIQADGVPDEACFPYTSGDQA-CSACSDW--RSRATRITGMVKLESHPAMKEWVATR---------------GPAIASMMVYEDFQAYGGGAAYRHVLGN-EIGGHAVTIVGYDD-------PG---GYWILKNSWGENWGEAGFGRIAYG 268 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1973 ID=mRNA_1973|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_26:658960..659970- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGGCGAGGACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGGback to top protein sequence of jgi.p|Trimin1|163569 >Trimin1|163569|e_gw1.26.274.1 ID=Trimin1|163569|e_gw1.26.274.1|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp MGARTIAVAAVVGVCLGVLLTLLYINRRRIYKAVAAAPPEDLPTYFKWKEback to top mRNA from alignment at Contig_26:658960..659970- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1973 ID=mRNA_1973|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_26:658960..659970- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:658960..659970- >mRNA_1973 ID=mRNA_1973|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_26:658960..659970- (Tribonema minus UTEX_B_3156 )back to top |