mRNA_1973 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163569
Unique NamemRNA_1973
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A835Z8B2_9STRA (Putative cysteine protease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B2_9STRA)

HSP 1 Score: 650 bits (1677), Expect = 1.860e-235
Identity = 311/333 (93.39%), Postives = 322/333 (96.70%), Query Frame = 1
Query:    1 MGARTIAVAAVVGVCLGVLLTLLYINRRRIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA 999
            MGARTIAVAAVVGVCLGVLLTLLYINRRRIY AVAAA P+DLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCW  H+GCN GGSPE TYDLPQLT+AGIPLEEEFPY ATDTAPCKAITEGVLRVRT+KNTGRDLC+DPATVPE+VRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEV+G+ +E VN+AEPGFDD YWVVRSSWG+NWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPES KDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA
Sbjct:    1 MGARTIAVAAVVGVCLGVLLTLLYINRRRIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA 333          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A836CH74_9STRA (FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH74_9STRA)

HSP 1 Score: 386 bits (991), Expect = 2.300e-131
Identity = 176/312 (56.41%), Postives = 234/312 (75.00%), Query Frame = 1
Query:   64 LLYINRRRIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGAR-GIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNH 996
            LL I +R   + V       LP+YFKW+E++L+PVRNQ+GCA+CW++SVCDM++D++NL++GG +G N LS QYL+SC+  H GC++G SPE  YDLPQLTE GIPLE  FPY A+DT  C    +G+ RV+T+K+T  D+C++P TV  + +Q VI+ NIV MK+AL   PIVGTLRVH D+Y YDG +IY VTPGS  IGYHAV ++GY D + N  EPGF +GYWV +SSWG +WGA+ G + GF YVKMG NEADIESRAS C+V +P+  KDA+AATD+  M Y+SY++YV DP+R +F+G++   H
Sbjct:    3 LLIIYKRHSIRRVIGLGSVGLPSYFKWREKWLMPVRNQRGCASCWSISVCDMLADSLNLKTGGAYGLNPLSSQYLLSCYRGHLGCDIGDSPENVYDLPQLTEQGIPLESAFPYQASDTLACPKFADGIQRVKTVKSTAEDICLEPNTVVFTSKQDVINRNIVNMKRALQRSPIVGTLRVHHDVYNYDGKSIYTVTPGSPLIGYHAVLIVGYADANANTHEPGFSEGYWVAKSSWGNSWGAQDGDKRGFIYVKMGVNEADIESRASRCDVVVPDELKDAVAATDMTQMAYSSYSEYVNDPDRFNFLGSVKSAH 314          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A835YX55_9STRA (Putative cysteine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX55_9STRA)

HSP 1 Score: 336 bits (861), Expect = 3.230e-111
Identity = 169/322 (52.48%), Postives = 215/322 (66.77%), Query Frame = 1
Query:   25 AAVVGVCLGVLLTLLYINRRRIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAM 984
            A V+ +   VLL   Y  R   +    A     LP+Y K+KE+FL+PVR+Q+ CAACW+ SV DMM+DT+N ++ G +G+  LS QYL+SC   H+GC VGGSPE  YDLPQLT+AG PL+ + PY   +T PC+ +   VLRVRT+ NT   LC DP       R   I  N+  MK+ALL  GPIVGTLRV  DLY Y G  I++  P S+  GYHAVE++G+CDE+VNWAEPGFD  YW+VRSSWG +WG  +G+RYG+AYV MG N ADIESRASVC VE P + ++    T     RY SY  YV+DPER +F+G +
Sbjct:   12 AVVLALTCAVLLAFAY--RSASFATPVADDGAPLPSYLKYKEKFLMPVRDQRCCAACWSFSVADMMADTLNAQTAGAFGKRPLSAQYLLSCSSAHRGCEVGGSPEDVYDLPQLTDAGCPLDADLPYEGKET-PCRPLPPDVLRVRTVPNTAVSLCDDPDRALPGTRAATIRRNVRNMKRALLQYGPIVGTLRVTGDLYAYRGDGIFRGDPASKFYGYHAVEIVGWCDENVNWAEPGFDGAYWIVRSSWGFDWGVPKGMRYGWAYVTMGENCADIESRASVCRVEFPMALEEVRRRTPTSAARYESYEHYVDDPERENFIGGL 330          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A836CER7_9STRA (FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER7_9STRA)

HSP 1 Score: 305 bits (780), Expect = 4.360e-99
Identity = 152/296 (51.35%), Postives = 198/296 (66.89%), Query Frame = 1
Query:  124 LPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDD-GYWVVRSSWGENWGAR-GIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAK 1002
            LP+Y K+KER+L+PVR+Q  CAACW+ SV DMM+DT+N+ + G +G+  LS QYL+SC   H+GC+VGGSPEA Y+LPQ+T+ G PL+ + PY    T  CK +     RVRTIKNT  DLC DP+      R   I  N+  MK+AL+  GPIVGT+RV EDLY Y    IY+  P S+ +GYHA+E+IG+C E+VN  EPGFD   +W+ RSSWG  WG   G+  GFA+++MG N  DIESRASVC V  P+        T +  +RY SYT Y +DPER +F+ A+   HAK
Sbjct:   35 LPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGGYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLDADLPYEGKVTE-CKQLPPDAFRVRTIKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPTSKLVGYHAIEIIGWCCEAVNIREPGFDSPAFWICRSSWGVYWGVPPGVSSGFAFIEMGANVCDIESRASVCRVNFPKELAAIAKKTPLTEVRYESYTDYADDPERQNFIDAV---HAK 326          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A836CC90_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC90_9STRA)

HSP 1 Score: 274 bits (701), Expect = 8.410e-87
Identity = 145/315 (46.03%), Postives = 191/315 (60.63%), Query Frame = 1
Query:   85 RIYKAVAAAPPEDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHD-HQGCNVGGSPEATYDLPQLTE--AGIPLEEEFPYTATDTAPCKAITE----GVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALL-NGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAK 1002
            RI +   A+  E LP+YFK+ E  L P R+Q GCA+CWA +VCDM +D +NLR+ G WG   LSPQYL+SC     Q C  GG PE   + P  T    GIPLE E PY A D  PC A +     G +RVR    +   LC DP+     +R   +  N+  MK+A++ +GP+VGTLRV EDLY Y    IY+  P S  +GYHAV ++G+CD  VN AEPGFD  YWV++SSWG++WG   G+R G+AYV MG N A++ESRASV    +P+   +A          Y SY  Y  DP+R +F+GA+ + HA+
Sbjct:   38 RIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRA-DEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQK--RTAYWSYDDYARDPDRDNFLGAVARAHAE 349          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: D2VZV5_NAEGR (Cathepsin B-like cysteine proteinase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VZV5_NAEGR)

HSP 1 Score: 100 bits (248), Expect = 3.020e-20
Identity = 69/226 (30.53%), Postives = 111/226 (49.12%), Query Frame = 1
Query:  121 DLPTYFKWKERF---LVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARG 789
            D PT F  +E++   +  ++NQK C +CWA S   +++D   ++SGG+   + LSPQ+++SC   + GCN GG  +AT+    L   G   E   PY +           G +    +K+ G      P     S R+     +I+   KA  NGPI   + V+ D Y Y     + V+   R +G HAV+++G+  +S +         YW+  +SWGE+WG +G
Sbjct:  124 DFPTQFDAREQWPQCIRSIKNQKNCGSCWAFSASSVLADRFCIKSGGKVNVD-LSPQFMVSCSGQNNGCN-GGFFDATWRF--LVSVGTVSEACVPYVSFG---------GAVPACNVKSCGVPGQKSPFYRAGSARKLEGMLDIMADLKA--NGPIQVAMGVYRDFYSYKSGVYHHVS--GRYVGGHAVKIVGWGYDSASKLP------YWICANSWGEDWGIKG 326          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: CATB2_GIAIN (Cathepsin B-like CP2 n=4 Tax=Giardia intestinalis TaxID=5741 RepID=CATB2_GIAIN)

HSP 1 Score: 91.3 bits (225), Expect = 2.250e-17
Identity = 75/254 (29.53%), Postives = 115/254 (45.28%), Query Frame = 1
Query:  118 EDLPTYFKWKERF---LVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPAT---VPESVRQQVIDANIVRMKKAL-LNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDG--YWVVRSSWGENWGARGIRYGFAYVKMGCNEADIESRA 852
            +D+P  F ++E +   +  V +Q GC +CWA S      D   + +G        SPQY++SC H    CN G  P        LT+ G   +E  PY +  T              T++ T    C D ++   +  +   +    +I  M KAL  +GP+     VH D   Y+   +YQ T G  + G HAVE++GY  +         DDG  YW++++SWG +WG  G    F  ++ G N+  IE +A
Sbjct:   73 DDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATFGDRRCV-AGLDKKPVKYSPQYVVSCDHGDMACNGGWLPNV---WKFLTKTGTTTDECVPYKSGST--------------TLRGTCPTKCADGSSKVHLATATSYKDYGLDIPAMMKALSTSGPLQVAFLVHSDFMYYES-GVYQHTYGYME-GGHAVEMVGYGTD---------DDGVDYWIIKNSWGPDWGEDGY---FRMIR-GINDCSIEEQA 293          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A2G9P5Z3_9ARCH (Pept_C1 domain-containing protein n=1 Tax=Candidatus Diapherotrites archaeon CG10_big_fil_rev_8_21_14_0_10_31_34 TaxID=1974406 RepID=A0A2G9P5Z3_9ARCH)

HSP 1 Score: 93.2 bits (230), Expect = 4.170e-17
Identity = 79/257 (30.74%), Postives = 117/257 (45.53%), Query Frame = 1
Query:  121 DLPTYFKWKER----FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDL--PQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDAN------IVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDG--YWVVRSSWGENWGARGIRYGFAYVKMGCNEADIES 846
            DLP +F W+++    ++  VR+Q  C +CWA      +   +N           LS Q L+SC+H   GC+ G   E   ++        G+  E  FPYTAT+                  N   D  VD     +++  Q ID N      I  +K+ALL+ GPI   ++V ED   Y G  IY  T     +GYHAV ++G+          G  DG  YW+V++SWGENWG +G      Y ++   ++ I+S
Sbjct:  112 DLPAFFDWRDQHSYNYITEVRDQSSCGSCWAFGAIATLEGHVNAYYNNPNLDLDLSEQDLVSCFHG-TGCS-GAYTEQIEEIFSDYFQNIGVAKETCFPYTATN--------------NNCSNKCSDWQVDAW---KTLGYQSIDLNGSLDERINNLKQALLDYGPIEVGMQVFEDFPDYGG-GIYSHTV-EWILGYHAVTIVGF----------GKYDGMNYWIVKNSWGENWGEQG------YFRIAAGDSGIDS 331          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A660XD16_9BACT (Pept_C1 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A660XD16_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 1.310e-16
Identity = 78/292 (26.71%), Postives = 127/292 (43.49%), Query Frame = 1
Query:  118 EDLPTYFKWKER---FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARG--------IRYGF--AYVKMGCNEADIESRASVCEVEMPESAKDAIAATDIDTMRYTSYTQYVED 954
            E+LP++F W++    ++ PV+NQ    +CWA S    +     + +        LS Q+LISC +D    N G     T D   L   G+P E  FPY A D +PC              N   D   +  T P           I  +K+A+   P+  +++V+ D Y Y    +Y+    + + G HAV ++G+ D             YW+V++SWG NWG  G        + +G+   YV  G  E  +    S  E+E+  +  D ++    DT+ +T+ +  V +
Sbjct:   84 ENLPSHFDWRDNNGNWVTPVKNQNPAGSCWAFSAAGQLESWYRITTNDPDTMIDLSEQFLISC-NDEATANGGYFTGYTLDFI-LDVGGVPSESCFPYKADD-SPCS-------------NACEDWQSEALTFPGWGYVTGSKPLIDNIKQAVYQHPLSVSMQVYSDFYNYTS-GVYKRVSETNE-GGHAVVIVGWDDAEQ----------YWIVKNSWGPNWGEDGYFRITWDDMEFGYNGVYVYNGMTEDALA--ISENEIELDMTVGDVLS----DTITFTNISSDVAE 341          
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Match: A0A7W0H289_9ACTN (Peptidase C1 n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0H289_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 2.320e-16
Identity = 67/222 (30.18%), Postives = 102/222 (45.95%), Query Frame = 1
Query:  154 FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWHDHQGCNVGGSP---EATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVLRVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWVVRSSWGENWGARG---IRYG 801
            ++ P+R+Q+ C +C A + C ++  T+ ++  G      LS   L  C    +G    G     +    L  +   G+P E  FPYT+ D A C A ++   R R  + TG         + E V  +               GP + ++ V+ED   Y G A Y+   G+ +IG HAV ++GY D       PG   GYW++++SWGENWG  G   I YG
Sbjct:   76 YVTPIRDQEQCLSCVAFAACAVVEGTLRVQEHGPDLEVDLSEACLYYCVAAGEGRTCFGETGGWQPKKALAAIQADGVPDEACFPYTSGDQA-CSACSDW--RSRATRITGMVKLESHPAMKEWVATR---------------GPAIASMMVYEDFQAYGGGAAYRHVLGN-EIGGHAVTIVGYDD-------PG---GYWILKNSWGENWGEAGFGRIAYG 268          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163569 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8B2_9STRA1.860e-23593.39Putative cysteine protease n=2 Tax=Tribonema minus... [more]
A0A836CH74_9STRA2.300e-13156.41FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835YX55_9STRA3.230e-11152.48Putative cysteine protease n=1 Tax=Tribonema minus... [more]
A0A836CER7_9STRA4.360e-9951.35FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CC90_9STRA8.410e-8746.03Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
D2VZV5_NAEGR3.020e-2030.53Cathepsin B-like cysteine proteinase n=1 Tax=Naegl... [more]
CATB2_GIAIN2.250e-1729.53Cathepsin B-like CP2 n=4 Tax=Giardia intestinalis ... [more]
A0A2G9P5Z3_9ARCH4.170e-1730.74Pept_C1 domain-containing protein n=1 Tax=Candidat... [more]
A0A660XD16_9BACT1.310e-1626.71Pept_C1 domain-containing protein n=1 Tax=Candidat... [more]
A0A7W0H289_9ACTN2.320e-1630.18Peptidase C1 n=1 Tax=Thermoleophilaceae bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:658960..659970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163569|e_gw1.26.274.1
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
KEGG koko:K01363
EC3.4.22.1
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006810,GO:0007155,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016192,GO:0016197,GO:0016787,GO:0017147,GO:0019538,GO:0022610,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0030312,GO:0031012,GO:0033036,GO:0035592,GO:0035593,GO:0036094,GO:0042600,GO:0043170,GO:0043236,GO:0044238,GO:0044421,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050840,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060828,GO:0062023,GO:0065007,GO:0070011,GO:0071692,GO:0071704,GO:0071944,GO:0090263,GO:0097159,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Preferred nameTINAGL1
Descriptionscavenger receptor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1544@1|root,KOG1544@2759|Eukaryota
Evalue1.05e-50
Seed ortholog2880.D8LPA7
Hectar predicted targeting categorysignal peptide
TranscriptId163891
TrackFilteredModels1
ProteinId163569
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163569gene_1973Tribonema minus UTEX_B_3156 geneContig_26 658960..659970 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1973_1exon_1973_1Tribonema minus UTEX_B_3156 exonContig_26 658960..659970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1973CDS_1973Tribonema minus UTEX_B_3156 CDSContig_26 658960..659970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163569Trimin1|163569|e_gw1.26.274.1Tribonema minus UTEX_B_3156 polypeptideContig_26 658960..659970 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1973 ID=mRNA_1973|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_26:658960..659970- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGAGGACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGG
GGTGCTGCTTACGCTGTTGTACATTAACAGACGCCGCATCTACAAAGCAG
TGGCAGCAGCACCCCCAGAGGACCTGCCTACATATTTCAAGTGGAAGGAA
CGGTTTCTGGTGCCAGTGAGAAACCAGAAGGGCTGTGCTGCATGCTGGGC
GCTCAGCGTATGCGACATGATGAGCGACACTATCAATCTACGCAGCGGCG
GGCAGTGGGGCAGAAACCATCTCAGTCCGCAGTACCTCATATCGTGCTGG
CACGATCACCAGGGATGTAACGTCGGCGGCTCACCAGAAGCGACGTACGA
TTTGCCCCAACTGACTGAGGCGGGCATACCTTTGGAGGAAGAGTTTCCCT
ACACTGCAACAGACACTGCACCCTGCAAAGCCATCACAGAGGGTGTTTTG
AGAGTGCGCACCATCAAAAACACTGGACGCGACTTGTGCGTCGATCCTGC
CACAGTACCAGAGAGTGTGAGACAGCAGGTGATAGATGCCAACATTGTCA
GGATGAAAAAGGCCCTGCTGAACGGGCCAATAGTGGGCACTCTGCGCGTC
CATGAGGACCTGTACAAGTACGACGGCCTAGCTATATACCAAGTGACACC
TGGCTCTAGGCAGATTGGTTATCACGCTGTGGAGGTGATTGGTTACTGTG
ATGAAAGCGTCAATTGGGCTGAGCCTGGTTTTGACGACGGCTACTGGGTT
GTAAGATCGAGTTGGGGGGAGAACTGGGGGGCTCGAGGCATACGCTACGG
GTTCGCATACGTTAAAATGGGCTGCAACGAGGCAGACATCGAAAGTCGTG
CATCAGTTTGTGAGGTGGAAATGCCAGAGAGCGCGAAGGATGCAATAGCT
GCAACTGACATTGACACCATGAGATACACCAGCTATACTCAATATGTGGA
GGACCCAGAAAGAAGTCACTTTGTGGGGGCAATGGTCAAGAACCATGCAA
AGTCGTTGTAA
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protein sequence of jgi.p|Trimin1|163569

>Trimin1|163569|e_gw1.26.274.1 ID=Trimin1|163569|e_gw1.26.274.1|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp
MGARTIAVAAVVGVCLGVLLTLLYINRRRIYKAVAAAPPEDLPTYFKWKE
RFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCW
HDHQGCNVGGSPEATYDLPQLTEAGIPLEEEFPYTATDTAPCKAITEGVL
RVRTIKNTGRDLCVDPATVPESVRQQVIDANIVRMKKALLNGPIVGTLRV
HEDLYKYDGLAIYQVTPGSRQIGYHAVEVIGYCDESVNWAEPGFDDGYWV
VRSSWGENWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESAKDAIA
ATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAKSL*
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mRNA from alignment at Contig_26:658960..659970-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1973 ID=mRNA_1973|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_26:658960..659970- (Tribonema minus UTEX_B_3156 )
ATGGGGGCGAGGACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGG GGTGCTGCTTACGCTGTTGTACATTAACAGACGCCGCATCTACAAAGCAG TGGCAGCAGCACCCCCAGAGGACCTGCCTACATATTTCAAGTGGAAGGAA CGGTTTCTGGTGCCAGTGAGAAACCAGAAGGGCTGTGCTGCATGCTGGGC GCTCAGCGTATGCGACATGATGAGCGACACTATCAATCTACGCAGCGGCG GGCAGTGGGGCAGAAACCATCTCAGTCCGCAGTACCTCATATCGTGCTGG CACGATCACCAGGGATGTAACGTCGGCGGCTCACCAGAAGCGACGTACGA TTTGCCCCAACTGACTGAGGCGGGCATACCTTTGGAGGAAGAGTTTCCCT ACACTGCAACAGACACTGCACCCTGCAAAGCCATCACAGAGGGTGTTTTG AGAGTGCGCACCATCAAAAACACTGGACGCGACTTGTGCGTCGATCCTGC CACAGTACCAGAGAGTGTGAGACAGCAGGTGATAGATGCCAACATTGTCA GGATGAAAAAGGCCCTGCTGAACGGGCCAATAGTGGGCACTCTGCGCGTC CATGAGGACCTGTACAAGTACGACGGCCTAGCTATATACCAAGTGACACC TGGCTCTAGGCAGATTGGTTATCACGCTGTGGAGGTGATTGGTTACTGTG ATGAAAGCGTCAATTGGGCTGAGCCTGGTTTTGACGACGGCTACTGGGTT GTAAGATCGAGTTGGGGGGAGAACTGGGGGGCTCGAGGCATACGCTACGG GTTCGCATACGTTAAAATGGGCTGCAACGAGGCAGACATCGAAAGTCGTG CATCAGTTTGTGAGGTGGAAATGCCAGAGAGCGCGAAGGATGCAATAGCT GCAACTGACATTGACACCATGAGATACACCAGCTATACTCAATATGTGGA GGACCCAGAAAGAAGTCACTTTGTGGGGGCAATGGTCAAGAACCATGCAA AGTCGTTGTAA
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Coding sequence (CDS) from alignment at Contig_26:658960..659970-

>mRNA_1973 ID=mRNA_1973|Name=jgi.p|Trimin1|163569|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_26:658960..659970- (Tribonema minus UTEX_B_3156 )
ATGGGGGCGAGGACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGG
GGTGCTGCTTACGCTGTTGTACATTAACAGACGCCGCATCTACAAAGCAG
TGGCAGCAGCACCCCCAGAGGACCTGCCTACATATTTCAAGTGGAAGGAA
CGGTTTCTGGTGCCAGTGAGAAACCAGAAGGGCTGTGCTGCATGCTGGGC
GCTCAGCGTATGCGACATGATGAGCGACACTATCAATCTACGCAGCGGCG
GGCAGTGGGGCAGAAACCATCTCAGTCCGCAGTACCTCATATCGTGCTGG
CACGATCACCAGGGATGTAACGTCGGCGGCTCACCAGAAGCGACGTACGA
TTTGCCCCAACTGACTGAGGCGGGCATACCTTTGGAGGAAGAGTTTCCCT
ACACTGCAACAGACACTGCACCCTGCAAAGCCATCACAGAGGGTGTTTTG
AGAGTGCGCACCATCAAAAACACTGGACGCGACTTGTGCGTCGATCCTGC
CACAGTACCAGAGAGTGTGAGACAGCAGGTGATAGATGCCAACATTGTCA
GGATGAAAAAGGCCCTGCTGAACGGGCCAATAGTGGGCACTCTGCGCGTC
CATGAGGACCTGTACAAGTACGACGGCCTAGCTATATACCAAGTGACACC
TGGCTCTAGGCAGATTGGTTATCACGCTGTGGAGGTGATTGGTTACTGTG
ATGAAAGCGTCAATTGGGCTGAGCCTGGTTTTGACGACGGCTACTGGGTT
GTAAGATCGAGTTGGGGGGAGAACTGGGGGGCTCGAGGCATACGCTACGG
GTTCGCATACGTTAAAATGGGCTGCAACGAGGCAGACATCGAAAGTCGTG
CATCAGTTTGTGAGGTGGAAATGCCAGAGAGCGCGAAGGATGCAATAGCT
GCAACTGACATTGACACCATGAGATACACCAGCTATACTCAATATGTGGA
GGACCCAGAAAGAAGTCACTTTGTGGGGGCAATGGTCAAGAACCATGCAA
AGTCGTTGTAA
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