mRNA_1948 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163560
Unique NamemRNA_1948
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A836CFM8_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM8_9STRA)

HSP 1 Score: 676 bits (1744), Expect = 9.750e-246
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query:    1 MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVGVNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVK 1002
            MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVGVNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVK
Sbjct:    1 MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVGVNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVK 334          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 3.600e-148
Identity = 203/286 (70.98%), Postives = 240/286 (83.92%), Query Frame = 1
Query:  148 VNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARR--VREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSV 999
            VN++V+SGRLG G TAQV+ECHSPQ+GKAALK++EK+TG ESLHRE+MALQALK+HSNIISL++IIDD  SDIT LV EMAERGSLVGVM+SG+ECQR+  +IV GL HMHSKGF+H DVKPANI+R A G SKLADFGCCVRM EGG  A++++FMGTPAFMAPE FKDG+VTPAVDVWS ASTLHYVVYGTLPF++ +RGG+  +    ++  IEDSIM+ EP LG N R R++ N+E  WHSDDVTKFNHFCK GL K+P  R TLGQWRQHEWLY+  +  V
Sbjct:    3 VNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYIPLV 288          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A835Z3R1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R1_9STRA)

HSP 1 Score: 275 bits (703), Expect = 2.210e-88
Identity = 138/279 (49.46%), Postives = 191/279 (68.46%), Query Frame = 1
Query:  148 VNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGV-MVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYY 981
            VNE  I+G +G G+TA+VFEC S   GK A+K++ K+   ESLHREIMALQ LK H NI++L  +I+DP  D+  LV E+A +GSLVGV M + L+CQ V SD +S L +MHS+G++H DVKPANI+  ++G +KL DFGC +R+++  + A+   FMGTPAFMAPE+F  GI+T A+DVWSL  T+H+VVYG+LPF +           E   +  S+MY  P++G  +  R L  +  NW +DD+++F HFCK G +K P +R TL +  QH+WL Y
Sbjct:    7 VNEFSITGHMGTGSTARVFECSSDVHGKVAMKMVYKSKAKESLHREIMALQDLK-HKNIVNLLVVINDPRLDVAFLVEELATKGSLVGVVMKTSLQCQHVASDTMSALTYMHSRGYVHRDVKPANILIMSDGKAKLTDFGCAIRVSDCLTRAK---FMGTPAFMAPELFSTGIITTAIDVWSLVGTMHHVVYGSLPFGA-----------EGLVLSQSVMYSSPAMGTTMSPRCLKMMNENWTNDDISRFKHFCKEGFRKDPDKRITLEKLAQHDWLTY 270          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A836CE44_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE44_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.700e-32
Identity = 98/282 (34.75%), Postives = 132/282 (46.81%), Query Frame = 1
Query:  172 RLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVV-EMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKD--GIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMY-------CEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAV 987
            R+G G T  V+          ALK++          RE+ ALQAL+ H NI+ +             L+V E+AE GSL GV++   E     +++ S L  +H +G+ H DVKP NI+R A+G  KL DFGCC R  E  +E + R   GTPAFM PE F+      T AVD W LA+T   +V G  PF+   RG           + DSI+Y       C+   GN+               DD     +F   GL K+P  R ++ Q  QH WL  A 
Sbjct:   58 RIGGGGTGSVYAARDEYGADVALKVVANDAAAYG--REVRALQALQ-HRNIVQMVDTQGGQEGKGPYLIVMELAEWGSLAGVVLRSAEAAAYVAEVASALQFIHERGYAHGDVKPGNILRFADGTVKLCDFGCCER-PEAAAETRGRP-RGTPAFMPPEAFQGTGSGWTAAVDSWGLAATSFCLVRGRPPFSVAGRG-----------LFDSILYGRANLTACQGERGNDA--------------DDEADLANFVAWGLTKAPRGRPSMEQVLQHPWLTKAA 309          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A835YXT3_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.260e-27
Identity = 84/271 (31.00%), Postives = 134/271 (49.45%), Query Frame = 1
Query:  172 RLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDIT---CLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            RLG GATA V+E  + +    ALK++ +     +  RE+  L+ ++ H  I+ L+   ++ +   T    +V+E+   GSL G+++ G E  +   D+   L ++H KG++H D+KPAN++R   G  K+ DFGCC ++A    +   R   GTPAFM+PE ++    T A DVWSLA+T+  VV G  PF                ++ + IMY  P    + RS  +   E      + +   H    GL K    R ++     H W+
Sbjct:   22 RLGSGATATVYEACTEKNEVVALKVVMRDRN--TYMRELRVLKEMR-HDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATD-DDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQ-------------NLVEKIMYGAPD---SHRSAPVVCCE------EESNLAHLVNWGLSKPARDRPSVDDVLHHPWM 266          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: F0WLC1_9STRA (cGMP-dependent protein kinase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLC1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.800e-25
Identity = 99/293 (33.79%), Postives = 145/293 (49.49%), Query Frame = 1
Query:  148 VNEHVISGRLGRGATAQVFECHSPQFGKA-ALKILEKT-----TGCE-----SLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVS-GLECQ---RVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVT--PAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            VNE+VI G LG+G   +V  C + Q  K  A+KIL K+      G E     +L REI  ++ L+ H N++ L  +IDDP+S    LV E  +   +  + +  GL  Q   R   D++ GL ++H    +H D+KP NI+ +AEGV+K+ADFG   RM    SE       GTPAFMAPEMF        P+VD+WSL +TL+ +V G  P+ +      + +V+++         C PS        +L N+                +  L K P  R +L    +HEW+
Sbjct:  587 VNEYVIQGDLGKGTYGRVKLCQNEQDNKLYAVKILHKSFVSRMAGKEDLLRDALRREIAIMKKLQ-HRNVVRLVEVIDDPSSAKIYLVQEYVKHNLMDQIAIMRGLTEQVARRYLRDLLLGLHYLHLHRVIHRDIKPGNILVSAEGVAKIADFGTA-RMIMNESETLSGA-KGTPAFMAPEMFDIDATYRGPSVDIWSLGATLYMMVIGHPPWLADNEIVLSEKVQKDE-------LCFPSEAETSVDPHLKNL---------------LQRMLTKDPKLRISLPGCFKHEWV 854          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: UPI001CB8B52D (serine/threonine-protein kinase PEPKR2-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8B52D)

HSP 1 Score: 110 bits (274), Expect = 2.240e-23
Identity = 81/251 (32.27%), Postives = 128/251 (51.00%), Query Frame = 1
Query:  175 LGRGATAQVFECHSPQFGKA-ALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVM-VSGLECQRVTSDIVSGLM----HMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEG-----DIEDSIMYCEPSLGNNVRSRYLT-NIESNWHSDDVTK 891
            +G+G    V +C S   G+  A KIL+K  G E +H+E+  +Q L  H  +++L  + +D   D   LV+E+   G L+  M   GL  ++  ++++  LM    + H  G +H DVKP NI+ +A GV KLADFG   R+A G S       +G+PA++APE+   G  +  VD+WS    LH ++ G LPF     GGS   + E       D +  +       G ++    LT N+   + +D+V +
Sbjct:  102 IGQGKFGSVVKCRSKVSGEEFACKILQK--GEEIVHKEVEIMQHLSGHPGVVTLKAVYED-VQDFH-LVMELCSGGRLLDQMRQDGLFSEQKAANLIKELMLVLKYCHEMGVIHRDVKPENILLSASGVIKLADFGLAARIANGQSV---HGVVGSPAYVAPEVLTGGY-SEKVDIWSAGVVLHALLVGFLPFG----GGSVNTIFEAVKNVSIDFQSGLWDSVSQSGRDLIGHMLTRNVSERYSADEVLR 340          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A523VB14_9CHLR (Non-specific serine/threonine protein kinase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523VB14_9CHLR)

HSP 1 Score: 107 bits (268), Expect = 5.890e-23
Identity = 69/202 (34.16%), Postives = 104/202 (51.49%), Query Frame = 1
Query:  154 EHVISGRLGRGATAQVFECHSPQFGK-AALKILEKTTGCESLHREIMALQALK----NHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQ---RVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPF 735
            E+ I   + RGATA V++ + P+  +  A+K+L      E   RE  A +A      +H NI+ +Y    D   D+  +VV+  + GSL  +M   +      ++   + S L H HS+G +H DVKPANI+   E    LADFG    + E  +  Q    MGTPA++APE      V    D++SLA+TL  ++ G +PF
Sbjct:   12 EYRIVEHIARGATANVYKAYQPKLNRNVAIKVLSPLYAKEEDFRERFAREAKAIAQLDHPNIVPVYDF--DRQGDLVYIVVQYVDTGSLADLMGERMPLDLAVKILDQVASALSHAHSRGIIHRDVKPANILLGQEDWVLLADFGLAKMLEESATITQPGSGMGTPAYIAPEQATGESVDARSDIYSLAATLFQMITGRVPF 211          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A197JSI3_9FUNG (Pkinase-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JSI3_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 6.120e-23
Identity = 77/252 (30.56%), Postives = 123/252 (48.81%), Query Frame = 1
Query:  250 EKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMV--------SGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKD-GIVT-PAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            E+ +  + +  EI  L+ L NH NI+ LY ++D    D   +V E+ E G+L  V V        +  EC+ V   +V G+ ++H    +H D+KP N++R+A+G  K+ DFG      + G +   +   G+PAFMAPE+ +  G V+    D+WS+  TL  + YG LPF S +     + + E+          EP LG+    R+ T I         T+        L+K P++R T+ + R   WL
Sbjct:  282 EEKSPLDLIRGEIAILKKL-NHVNIVKLYEVLDVAAEDSMYMVFELCELGALTEVSVGDKPGKIFTDSECRDVFQQMVLGIEYLHEHDIIHRDIKPDNLLRSADGTLKIVDFGVSEMFTKKGDDMIKKS-AGSPAFMAPELCRSHGEVSGKPTDLWSMGVTLFCIRYGRLPFKSGMSLELQKMINED----------EPDLGDEQDPRFRTTI---------TRL-------LEKDPSKRITIDELRNDPWL 505          
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Match: A0A232LZ32_9EURO (Protein kinase domain-containing protein n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232LZ32_9EURO)

HSP 1 Score: 109 bits (273), Expect = 9.060e-23
Identity = 73/244 (29.92%), Postives = 122/244 (50.00%), Query Frame = 1
Query:  274 LHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGL-------ECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEM--FKDGIVT-PAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            L +E +A+    NHSN++SL+ ++DDP  D   +V+EM ++G ++ V +          +C+    D++ G+ ++H++G +H D+KP N + T E V K+ DFG     A+  S+       G+PAF+ PE+   K G V+  A D+WS+  TL+ + YG +PF            +   ++ +SI   E +LG                 +D     H     LQK PA+R T+ + R H W+
Sbjct:  163 LIKEEIAIMKKLNHSNLVSLFEVLDDPNEDSLYMVMEMCQKGVIMKVGLGDRADPYDDDQCRCWFRDLILGIEYLHAQGIVHRDIKPDNCLLTNEDVLKVVDFGVSQMFAKD-SDMYTAKSAGSPAFLPPELCVVKHGDVSGKAADIWSMGVTLYCLRYGRIPFEK----------QSIFELYESIKNDEVNLGEET-------------DEDFKDLLHRI---LQKDPAKRITMRELRDHPWV 379          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163560 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFM8_9STRA9.750e-246100.00Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A835ZCT2_9STRA3.600e-14870.98Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z3R1_9STRA2.210e-8849.46Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CE44_9STRA1.700e-3234.75Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YXT3_9STRA1.260e-2731.00Kinase-like domain-containing protein n=2 Tax=Trib... [more]
F0WLC1_9STRA3.800e-2533.79cGMP-dependent protein kinase n=1 Tax=Albugo laiba... [more]
UPI001CB8B52D2.240e-2332.27serine/threonine-protein kinase PEPKR2-like n=1 Ta... [more]
A0A523VB14_9CHLR5.890e-2334.16Non-specific serine/threonine protein kinase n=1 T... [more]
A0A197JSI3_9FUNG6.120e-2330.56Pkinase-domain-containing protein n=1 Tax=Linneman... [more]
A0A232LZ32_9EURO9.060e-2329.92Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:597456..598460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163560|e_gw1.26.62.1
DescriptionCalcium calmodulin-dependent protein kinase kinase. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsCOG0631@1|root,COG0664@1|root,KOG0585@1|root,KOG0585@2759|Eukaryota,KOG0698@2759|Eukaryota,KOG1113@2759|Eukaryota,1MC03@121069|Pythiales
Evalue1.11e-28
Seed ortholog36331.EPrPI00000020186
Hectar predicted targeting categoryother localisation
TranscriptId163882
TrackFilteredModels1
ProteinId163560
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163560gene_1948Tribonema minus UTEX_B_3156 geneContig_26 597456..598460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1948_1exon_1948_1Tribonema minus UTEX_B_3156 exonContig_26 597456..598460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1948CDS_1948Tribonema minus UTEX_B_3156 CDSContig_26 597456..598460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163560Trimin1|163560|e_gw1.26.62.1Tribonema minus UTEX_B_3156 polypeptideContig_26 597456..598460 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1948 ID=mRNA_1948|Name=jgi.p|Trimin1|163560|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_26:597456..598460+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCAGAGAAGTGTAGTGCGCGAAGCACGTCACAAGTCGACCCGCAC
ATCGGTATTGTACAGATGCGAATCTCAAGGCTTTGTGTCCGTTGTTCCTG
TAGTGAGGAGCTCCAAAGTCACAAGCGTGAATGGCGTAATTGTGGGTGTC
AATGAGCATGTCATCTCAGGCAGGCTGGGTAGAGGTGCAACTGCCCAAGT
GTTTGAGTGTCATAGTCCTCAGTTTGGAAAAGCAGCTCTGAAGATACTGG
AGAAAACCACAGGGTGCGAGTCACTCCACCGTGAGATCATGGCGCTGCAG
GCTCTCAAGAACCACTCAAATATTATATCCCTGTACACTATAATAGATGA
TCCCACGTCAGACATCACCTGTCTAGTAGTGGAGATGGCAGAGAGGGGGT
CTCTGGTAGGTGTAATGGTGTCAGGCCTGGAATGTCAGAGGGTCACCAGC
GACATTGTGAGTGGGTTAATGCACATGCACTCGAAAGGCTTCTTACACTG
TGATGTAAAGCCCGCCAATATTGTGAGAACAGCTGAAGGAGTATCAAAGC
TAGCAGATTTTGGCTGCTGTGTGCGCATGGCAGAAGGAGGGAGCGAGGCT
CAACACCGGTACTTTATGGGAACGCCGGCATTCATGGCACCTGAGATGTT
CAAGGACGGTATCGTAACCCCAGCTGTAGATGTTTGGTCACTGGCTTCTA
CGCTCCACTATGTGGTGTATGGCACGCTGCCGTTCAACTCACATCTCAGA
GGAGGGAGTGCCAGGAGGGTCAGAGAAGAAGGAGACATTGAAGATTCGAT
CATGTACTGCGAGCCTTCACTCGGCAACAATGTGCGCTCTCGATACTTGA
CAAACATCGAAAGCAATTGGCACAGTGATGACGTGACAAAGTTCAATCAC
TTCTGCAAGACTGGGCTGCAAAAGAGCCCAGCACGAAGGAGCACGCTCGG
ACAGTGGAGACAGCATGAATGGTTGTATTACGCAGTGCTTAAATCTGTAA
AGTAG
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protein sequence of jgi.p|Trimin1|163560

>Trimin1|163560|e_gw1.26.62.1 ID=Trimin1|163560|e_gw1.26.62.1|Name=jgi.p|Trimin1|163560|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVGV
NEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQ
ALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTS
DIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEA
QHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLR
GGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNH
FCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVK*
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mRNA from alignment at Contig_26:597456..598460+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1948 ID=mRNA_1948|Name=jgi.p|Trimin1|163560|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_26:597456..598460+ (Tribonema minus UTEX_B_3156 )
ATGTACCAGAGAAGTGTAGTGCGCGAAGCACGTCACAAGTCGACCCGCAC ATCGGTATTGTACAGATGCGAATCTCAAGGCTTTGTGTCCGTTGTTCCTG TAGTGAGGAGCTCCAAAGTCACAAGCGTGAATGGCGTAATTGTGGGTGTC AATGAGCATGTCATCTCAGGCAGGCTGGGTAGAGGTGCAACTGCCCAAGT GTTTGAGTGTCATAGTCCTCAGTTTGGAAAAGCAGCTCTGAAGATACTGG AGAAAACCACAGGGTGCGAGTCACTCCACCGTGAGATCATGGCGCTGCAG GCTCTCAAGAACCACTCAAATATTATATCCCTGTACACTATAATAGATGA TCCCACGTCAGACATCACCTGTCTAGTAGTGGAGATGGCAGAGAGGGGGT CTCTGGTAGGTGTAATGGTGTCAGGCCTGGAATGTCAGAGGGTCACCAGC GACATTGTGAGTGGGTTAATGCACATGCACTCGAAAGGCTTCTTACACTG TGATGTAAAGCCCGCCAATATTGTGAGAACAGCTGAAGGAGTATCAAAGC TAGCAGATTTTGGCTGCTGTGTGCGCATGGCAGAAGGAGGGAGCGAGGCT CAACACCGGTACTTTATGGGAACGCCGGCATTCATGGCACCTGAGATGTT CAAGGACGGTATCGTAACCCCAGCTGTAGATGTTTGGTCACTGGCTTCTA CGCTCCACTATGTGGTGTATGGCACGCTGCCGTTCAACTCACATCTCAGA GGAGGGAGTGCCAGGAGGGTCAGAGAAGAAGGAGACATTGAAGATTCGAT CATGTACTGCGAGCCTTCACTCGGCAACAATGTGCGCTCTCGATACTTGA CAAACATCGAAAGCAATTGGCACAGTGATGACGTGACAAAGTTCAATCAC TTCTGCAAGACTGGGCTGCAAAAGAGCCCAGCACGAAGGAGCACGCTCGG ACAGTGGAGACAGCATGAATGGTTGTATTACGCAGTGCTTAAATCTGTAA AGTAG
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Coding sequence (CDS) from alignment at Contig_26:597456..598460+

>mRNA_1948 ID=mRNA_1948|Name=jgi.p|Trimin1|163560|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_26:597456..598460+ (Tribonema minus UTEX_B_3156 )
ATGTACCAGAGAAGTGTAGTGCGCGAAGCACGTCACAAGTCGACCCGCAC
ATCGGTATTGTACAGATGCGAATCTCAAGGCTTTGTGTCCGTTGTTCCTG
TAGTGAGGAGCTCCAAAGTCACAAGCGTGAATGGCGTAATTGTGGGTGTC
AATGAGCATGTCATCTCAGGCAGGCTGGGTAGAGGTGCAACTGCCCAAGT
GTTTGAGTGTCATAGTCCTCAGTTTGGAAAAGCAGCTCTGAAGATACTGG
AGAAAACCACAGGGTGCGAGTCACTCCACCGTGAGATCATGGCGCTGCAG
GCTCTCAAGAACCACTCAAATATTATATCCCTGTACACTATAATAGATGA
TCCCACGTCAGACATCACCTGTCTAGTAGTGGAGATGGCAGAGAGGGGGT
CTCTGGTAGGTGTAATGGTGTCAGGCCTGGAATGTCAGAGGGTCACCAGC
GACATTGTGAGTGGGTTAATGCACATGCACTCGAAAGGCTTCTTACACTG
TGATGTAAAGCCCGCCAATATTGTGAGAACAGCTGAAGGAGTATCAAAGC
TAGCAGATTTTGGCTGCTGTGTGCGCATGGCAGAAGGAGGGAGCGAGGCT
CAACACCGGTACTTTATGGGAACGCCGGCATTCATGGCACCTGAGATGTT
CAAGGACGGTATCGTAACCCCAGCTGTAGATGTTTGGTCACTGGCTTCTA
CGCTCCACTATGTGGTGTATGGCACGCTGCCGTTCAACTCACATCTCAGA
GGAGGGAGTGCCAGGAGGGTCAGAGAAGAAGGAGACATTGAAGATTCGAT
CATGTACTGCGAGCCTTCACTCGGCAACAATGTGCGCTCTCGATACTTGA
CAAACATCGAAAGCAATTGGCACAGTGATGACGTGACAAAGTTCAATCAC
TTCTGCAAGACTGGGCTGCAAAAGAGCCCAGCACGAAGGAGCACGCTCGG
ACAGTGGAGACAGCATGAATGGTTGTATTACGCAGTGCTTAAATCTGTAA
AGTAG
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