mRNA_1930 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163441
Unique NamemRNA_1930
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163441 vs. uniprot
Match: A0A836CHP6_9STRA (Zinc finger protein 271-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHP6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.170e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MLFPTSGHLVTHKRQHTSEKPFKCDFESCDYKCKTSSSL 117
            MLFPTSGHLVTHKRQHTSEKPFKCDFESCDYKCKTSSSL
Sbjct:    1 MLFPTSGHLVTHKRQHTSEKPFKCDFESCDYKCKTSSSL 39
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BLAST of jgi.p|Trimin1|163441 vs. uniprot
Match: T1G709_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G709_HELRO)

HSP 1 Score: 49.3 bits (116), Expect = 9.060e-5
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:    7 FPTSGHLVTHKRQHTSEKPFKCDFESCDYK 96
            +  S HL  HKR HT EKPFKC FE+CD+K
Sbjct:    6 YTKSSHLKAHKRLHTGEKPFKCQFENCDWK 35
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163441 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CHP6_9STRA1.170e-18100.00Zinc finger protein 271-like protein (Fragment) n=... [more]
T1G709_HELRO9.060e-563.33Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:539391..539972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163441|e_gw1.26.101.1
Hectar predicted targeting categoryother localisation
TranscriptId163763
TrackFilteredModels1
ProteinId163441
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163441gene_1930Tribonema minus UTEX_B_3156 geneContig_26 539391..539972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1930_1exon_1930_1Tribonema minus UTEX_B_3156 exonContig_26 539391..539972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1930CDS_1930Tribonema minus UTEX_B_3156 CDSContig_26 539391..539972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163441Trimin1|163441|e_gw1.26.101.1Tribonema minus UTEX_B_3156 polypeptideContig_26 539391..539972 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1930 ID=mRNA_1930|Name=jgi.p|Trimin1|163441|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_26:539391..539972- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTTCCTACATCCGGTCATCTCGTCACACACAAGCGCCAACATAC
AAGCGAGAAGCCTTTCAAGTGTGACTTTGAGAGCTGCGACTACAAGTGTA
AAACGTCCTCCAGCCTCAACAGGCATACACTCACTCACAGCGGCGCAAAA
CCTTTCAAGTGTGACTTTGAGGGGTGCGACTTCAAATGCACAACGTCCAG
CAACCTCACCACACACAAGCTCACTCACAGCGGTGCAAAACCTTTCAAGT
GTGACTTTGAGGGGTGCGACTTCAAATGCACAACGTCCAGCAACCTCACC
ACACACAAGCGCATTCACAGCGGCGACAAGCCCTATAAGTGTAACATTGA
GGGCTGTGACTACGCTTGTGCAGACCGCAGCAATCTCATCAGGCATACCC
GCAAGCACAGTGGTGAAAAGCCATACACATGTGACCTTGAGGGCTGCGAT
TTCGAGTGCGCACAGTCCGGCGACCTCATCAAGCACAAGCGCAAGCACAG
CGGTGATCGGCCATACAAGTGTGACTTTGAGGGCTGCGACCACACTTGTG
CACAAGTTGCCCACCTTACCAGACACAAGCGC
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protein sequence of jgi.p|Trimin1|163441

>Trimin1|163441|e_gw1.26.101.1 ID=Trimin1|163441|e_gw1.26.101.1|Name=jgi.p|Trimin1|163441|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp
MLFPTSGHLVTHKRQHTSEKPFKCDFESCDYKCKTSSSLNRHTLTHSGAK
PFKCDFEGCDFKCTTSSNLTTHKLTHSGAKPFKCDFEGCDFKCTTSSNLT
THKRIHSGDKPYKCNIEGCDYACADRSNLIRHTRKHSGEKPYTCDLEGCD
FECAQSGDLIKHKRKHSGDRPYKCDFEGCDHTCAQVAHLTRHKR
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mRNA from alignment at Contig_26:539391..539972-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1930 ID=mRNA_1930|Name=jgi.p|Trimin1|163441|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_26:539391..539972- (Tribonema minus UTEX_B_3156 )
ATGCTCTTTCCTACATCCGGTCATCTCGTCACACACAAGCGCCAACATAC
AAGCGAGAAGCCTTTCAAGTGTGACTTTGAGAGCTGCGACTACAAGTGTA
AAACGTCCTCCAGCCTCAACAGGCATACACTCACTCACAGCGGCGCAAAA
CCTTTCAAGTGTGACTTTGAGGGGTGCGACTTCAAATGCACAACGTCCAG
CAACCTCACCACACACAAGCTCACTCACAGCGGTGCAAAACCTTTCAAGT
GTGACTTTGAGGGGTGCGACTTCAAATGCACAACGTCCAGCAACCTCACC
ACACACAAGCGCATTCACAGCGGCGACAAGCCCTATAAGTGTAACATTGA
GGGCTGTGACTACGCTTGTGCAGACCGCAGCAATCTCATCAGGCATACCC
GCAAGCACAGTGGTGAAAAGCCATACACATGTGACCTTGAGGGCTGCGAT
TTCGAGTGCGCACAGTCCGGCGACCTCATCAAGCACAAGCGCAAGCACAG
CGGTGATCGGCCATACAAGTGTGACTTTGAGGGCTGCGACCACACTTGTG
CACAAGTTGCCCACCTTACCAGACACAAGCGC
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Coding sequence (CDS) from alignment at Contig_26:539391..539972-

>mRNA_1930 ID=mRNA_1930|Name=jgi.p|Trimin1|163441|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_26:539391..539972- (Tribonema minus UTEX_B_3156 )
ATGCTCTTTCCTACATCCGGTCATCTCGTCACACACAAGCGCCAACATAC
AAGCGAGAAGCCTTTCAAGTGTGACTTTGAGAGCTGCGACTACAAGTGTA
AAACGTCCTCCAGCCTCAACAGGCATACACTCACTCACAGCGGCGCAAAA
CCTTTCAAGTGTGACTTTGAGGGGTGCGACTTCAAATGCACAACGTCCAG
CAACCTCACCACACACAAGCTCACTCACAGCGGTGCAAAACCTTTCAAGT
GTGACTTTGAGGGGTGCGACTTCAAATGCACAACGTCCAGCAACCTCACC
ACACACAAGCGCATTCACAGCGGCGACAAGCCCTATAAGTGTAACATTGA
GGGCTGTGACTACGCTTGTGCAGACCGCAGCAATCTCATCAGGCATACCC
GCAAGCACAGTGGTGAAAAGCCATACACATGTGACCTTGAGGGCTGCGAT
TTCGAGTGCGCACAGTCCGGCGACCTCATCAAGCACAAGCGCAAGCACAG
CGGTGATCGGCCATACAAGTGTGACTTTGAGGGCTGCGACCACACTTGTG
CACAAGTTGCCCACCTTACCAGACACAAGCGC
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