mRNA_1919 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163582
Unique NamemRNA_1919
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A835YZ59_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ59_9STRA)

HSP 1 Score: 244 bits (624), Expect = 5.830e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSCVYS 372
            MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSCVYS
Sbjct:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSCVYS 124
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A835ZE92_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE92_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.880e-53
Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSC 363
            M+ VRRLS NA+ PTKK   SVCLQLYSAH+VTVP+H KALVQTDLE+E+P ST+GRIVNKPGLSVDNE+DVYSPIIE  +S NVG+V+YNHG +DF V  G C+AQL+V QAVI  ++E  C
Sbjct:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGC 123
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A835ZCC1_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.850e-37
Identity = 66/126 (52.38%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSCVYS 372
            M+ V+RLS NA LPT+ A ++V   LYSAH   +P+H  ALV+TDL M+VP S +GRI NK  L + N+++VY+ I++  H+GNVGVVL+NH D D  V  G C+AQL++EQ VI Q++EG+ VY+
Sbjct:    1 MLNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNNVYA 125
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A2T7A060_TUBBO (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tuber borchii TaxID=42251 RepID=A0A2T7A060_TUBBO)

HSP 1 Score: 104 bits (260), Expect = 2.860e-25
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:    4 IKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 354
            +++RRLS+ A++P + ++ +    LYSAHD T+  HGKALV TD++M +P  T+GRI  + GL+  N IDV + +I+  + G V V+L+NHGD DF+V  G  +AQL++E+ V  +V E
Sbjct:   99 LRIRRLSTKARIPKRGSALAAGYDLYSAHDTTIIRHGKALVDTDIQMMIPVGTYGRIAPRSGLASKNFIDVGAGVIDADYRGQVKVLLFNHGDADFVVKEGDRIAQLILERIVTPEVVE 217
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A2R5GQR2_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQR2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 8.920e-25
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 354
            M+ V +LS  A +PT+ ++++  L LY+AHD  +P+ GK LV+TDL M+VP  T+GR+  + GL+    +DV + +I+  + GNVGVVL+NH   D  V  G  +AQLV+E+  +  VRE
Sbjct:   12 MVLVSKLSEKATVPTRGSAEAAGLDLYAAHDAVIPAAGKGLVKTDLAMQVPLGTYGRVAPRSGLAWKKHVDVGAGVIDRDYRGNVGVVLFNHAQEDLEVKVGDRIAQLVLEKVSMAPVRE 131
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: UPI001F0DC996 (probable deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0DC996)

HSP 1 Score: 102 bits (253), Expect = 1.070e-24
Identity = 45/120 (37.50%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 354
            ++K++RLS++A+LPT+ +  +    LY+AHD  +P+ GK +++TD+ +++P   +GR+  + GL++ N ID+ + +I+  + GNVGV+++NHGD  F V  G  +AQL++E+ +  +V E
Sbjct:   46 VLKIKRLSADARLPTRGSKLAAGYDLYAAHDAIIPARGKIMIKTDISIQIPSGYYGRVAPRSGLALKNSIDIGAGVIDEDYRGNVGVIIFNHGDQAFTVTCGDRIAQLLLEKIITPEVIE 165
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A317SWK9_9PEZI (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SWK9_9PEZI)

HSP 1 Score: 102 bits (255), Expect = 1.280e-24
Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:    4 IKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 354
            +++R+ SS A++PT+ ++ +    LYSA D T+P+ GKALV TDLEM VP  T+GRI  + GL+  N IDV + +I+  + G+V V+L+NH D +F+V  G  VAQL++E+ V  +V E
Sbjct:   89 LRIRKTSSKARIPTRGSALAAGYDLYSARDTTIPTRGKALVDTDLEMVVPVETYGRIAPRSGLAWKNFIDVGAGVIDADYRGHVRVLLFNHSDENFVVKEGDRVAQLILERIVTPEVVE 207
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A4S9G9_OSTLU (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9G9_OSTLU)

HSP 1 Score: 99.8 bits (247), Expect = 3.300e-24
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    4 IKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHS--GNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 354
            ++V+RLS +A +PT+ +  +    L SAHD  VP+ GK LV+TDL + +P  T+ R+  + GL+    IDV + ++++   GNVGV+L+NHGD DF V  G  VAQL++EQ +  +V E
Sbjct:    6 LRVKRLSDDATMPTRGSEGAAGYDLASAHDCVVPARGKELVKTDLSIAIPLGTYARVAPRSGLAWKKFIDVGAGVVDYDYRGNVGVILFNHGDEDFEVKKGDRVAQLILEQILTPEVVE 124
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: UPI001C2049DD (deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C2049DD)

HSP 1 Score: 99.4 bits (246), Expect = 3.770e-24
Identity = 50/122 (40.98%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGS 360
            ++K  RL++NA  P+K +  +    L SA+D  VP+ GK L++TD+++E+P   +GR+  + GL+V N IDV + +I+  + GNVGVVL+NH DNDF+V  G  +AQL+ E+    ++ E +
Sbjct:    8 VLKFTRLTTNAFAPSKGSEKAAGFDLKSAYDYVVPARGKELIKTDIQIELPSGCYGRVAPRSGLAVKNFIDVGAGVIDEDYRGNVGVVLFNHSDNDFVVNKGDRIAQLICEKIFYPEIVEAN 129
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BLAST of jgi.p|Trimin1|163582 vs. uniprot
Match: A0A1Z3GCM5_9POXV (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Seal parapoxvirus TaxID=187984 RepID=A0A1Z3GCM5_9POXV)

HSP 1 Score: 98.2 bits (243), Expect = 1.390e-23
Identity = 52/120 (43.33%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 354
            +++V RLS++A LPT+ ++ +    LYSAHD TVP+ G+A+V TD+++ VP   +GR+  + GL+V   +DV + +I+  + GNVGV+L+N G  DF V  G  VAQL+ E+  +  VRE
Sbjct:    9 VLRVVRLSASATLPTRGSALAAGCDLYSAHDCTVPARGRAVVFTDIQVGVPHGCYGRVAPRSGLAVSRFVDVGAGVIDADYRGNVGVLLFNFGAEDFQVRRGDRVAQLICERVALPSVRE 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163582 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZ59_9STRA5.830e-82100.00Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835ZE92_9STRA1.880e-5369.92Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835ZCC1_9STRA1.850e-3752.38Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2T7A060_TUBBO2.860e-2544.54Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2R5GQR2_9STRA8.920e-2543.33Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI001F0DC9961.070e-2437.50probable deoxyuridine 5'-triphosphate nucleotidohy... [more]
A0A317SWK9_9PEZI1.280e-2445.38Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A4S9G9_OSTLU3.300e-2442.86Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI001C2049DD3.770e-2440.98deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A1Z3GCM5_9POXV1.390e-2343.33Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:501458..501832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163582|e_gw1.26.59.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG rclassRC00002,RC00010
KEGG ReactionR02100,R11560,R11896
KEGG ModuleM00053
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG koko:K01520,ko:K21286
EC3.5.1.122,3.6.1.23
GOsGO:0000166,GO:0000287,GO:0001889,GO:0003674,GO:0003824,GO:0004170,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006259,GO:0006260,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010469,GO:0010646,GO:0010648,GO:0014070,GO:0015949,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019103,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0023051,GO:0023057,GO:0030545,GO:0030547,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032552,GO:0032556,GO:0033554,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0036094,GO:0042221,GO:0042802,GO:0042975,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043497,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051259,GO:0051260,GO:0051716,GO:0055086,GO:0061008,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:0098772,GO:1901135,GO:1901136,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000272
Preferred nameDUT
DescriptiondUTP metabolic process
COG categoryF
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota
Evalue6.38e-26
Seed ortholog529818.AMSG_08120T0
Hectar predicted targeting categorymitochondrion
TranscriptId163904
TrackFilteredModels1
ProteinId163582
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163582gene_1919Tribonema minus UTEX_B_3156 geneContig_26 501458..501832 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1919_1exon_1919_1Tribonema minus UTEX_B_3156 exonContig_26 501458..501832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1919CDS_1919Tribonema minus UTEX_B_3156 CDSContig_26 501458..501832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163582Trimin1|163582|e_gw1.26.59.1Tribonema minus UTEX_B_3156 polypeptideContig_26 501458..501832 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1919 ID=mRNA_1919|Name=jgi.p|Trimin1|163582|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_26:501458..501832- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAAAGTACGCAGACTTTCCAGCAATGCAAAGCTACCGACAAAGAA
AGCAAGCGATTCAGTTTGTTTACAGTTGTATTCTGCACATGATGTAACTG
TGCCAAGTCACGGCAAGGCACTGGTGCAAACGGACCTGGAAATGGAGGTT
CCGTTCAGCACATTTGGCCGCATAGTGAACAAGCCAGGCCTCAGTGTAGA
CAATGAGATCGATGTTTACTCCCCCATCATCGAGCACAGCGGAAATGTTG
GGGTCGTTCTTTATAACCACGGCGACAATGACTTTATTGTGGCAACGGGA
GGCTGCGTTGCTCAGCTCGTCGTAGAACAGGCAGTAATAGTCCAAGTGCG
TGAAGGATCGTGCGTGTATAGTTGA
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protein sequence of jgi.p|Trimin1|163582

>Trimin1|163582|e_gw1.26.59.1 ID=Trimin1|163582|e_gw1.26.59.1|Name=jgi.p|Trimin1|163582|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEV
PFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVVLYNHGDNDFIVATG
GCVAQLVVEQAVIVQVREGSCVYS*
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mRNA from alignment at Contig_26:501458..501832-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1919 ID=mRNA_1919|Name=jgi.p|Trimin1|163582|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_26:501458..501832- (Tribonema minus UTEX_B_3156 )
ATGATCAAAGTACGCAGACTTTCCAGCAATGCAAAGCTACCGACAAAGAA
AGCAAGCGATTCAGTTTGTTTACAGTTGTATTCTGCACATGATGTAACTG
TGCCAAGTCACGGCAAGGCACTGGTGCAAACGGACCTGGAAATGGAGGTT
CCGTTCAGCACATTTGGCCGCATAGTGAACAAGCCAGGCCTCAGTGTAGA
CAATGAGATCGATGTTTACTCCCCCATCATCGAGCACAGCGGAAATGTTG
GGGTCGTTCTTTATAACCACGGCGACAATGACTTTATTGTGGCAACGGGA
GGCTGCGTTGCTCAGCTCGTCGTAGAACAGGCAGTAATAGTCCAAGTGCG
TGAAGGATCGTGCGTGTATAGTTGA
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Coding sequence (CDS) from alignment at Contig_26:501458..501832-

>mRNA_1919 ID=mRNA_1919|Name=jgi.p|Trimin1|163582|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_26:501458..501832- (Tribonema minus UTEX_B_3156 )
ATGATCAAAGTACGCAGACTTTCCAGCAATGCAAAGCTACCGACAAAGAA
AGCAAGCGATTCAGTTTGTTTACAGTTGTATTCTGCACATGATGTAACTG
TGCCAAGTCACGGCAAGGCACTGGTGCAAACGGACCTGGAAATGGAGGTT
CCGTTCAGCACATTTGGCCGCATAGTGAACAAGCCAGGCCTCAGTGTAGA
CAATGAGATCGATGTTTACTCCCCCATCATCGAGCACAGCGGAAATGTTG
GGGTCGTTCTTTATAACCACGGCGACAATGACTTTATTGTGGCAACGGGA
GGCTGCGTTGCTCAGCTCGTCGTAGAACAGGCAGTAATAGTCCAAGTGCG
TGAAGGATCGTGCGTGTATAGTTGA
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