mRNA_1918 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163660
Unique NamemRNA_1918
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A835Z4I2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I2_9STRA)

HSP 1 Score: 313 bits (803), Expect = 2.660e-102
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 
Query:    1 MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDMEEVIDVVIH 477
            MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDMEEVIDVVIH
Sbjct:  424 MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDMEEVIDVVIH 582
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A835ZBI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI1_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.760e-58
Identity = 101/129 (78.29%), Postives = 112/129 (86.82%), Query Frame = 1 
Query:    1 MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASS 387
            M  L VLIVDDV TFRKLLKKQLERRG+ RIDEA DGV+ALEMM+HTQYS VLMDVMMPRMNGDVCAR++REWE   G  +VPILLMSADVLS++NDVV SG VQ+FFTKPIDIVRLGN+LR+IA   S
Sbjct:  529 MANLSVLIVDDVSTFRKLLKKQLERRGVTRIDEAEDGVNALEMMKHTQYSVVLMDVMMPRMNGDVCARELREWEVRRGTPNVPILLMSADVLSDENDVVTSGIVQHFFTKPIDIVRLGNTLRNIAVTES 657
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A836CI54_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI54_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.210e-54
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 1 
Query:    1 MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDMEEVIDVV 471
            M  ++VLIVDDV  FRKLL+KQLERRG+ +IDEA DG+ AL++M+   Y  V+MDVMMPRMNGDVC R +REWE  +     P++LMSADVLS DNDV+ SG  Q FFTKP++IVRLGN+LRD+A  SS  G W +  +  +      D +  +++V
Sbjct:    1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 157
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: UPI00187618DA (histidine kinase hhk2p n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI00187618DA)

HSP 1 Score: 85.5 bits (210), Expect = 2.400e-16
Identity = 44/120 (36.67%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMM---QHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+V+D P  +K+LKK L++ G V ++ A DG +  +M+    H+ YS +L D+ MPR +G    R++R+WE  +G   +PI+ +SA+V+S+  D   S     + TKP+D + L  ++
Sbjct: 1930 KVLLVEDNPVNQKVLKKYLKKVG-VEVEVATDGAECTDMVFSRSHSYYSLILCDLHMPRKDGYQACREIRQWEKENGFKKMPIIALSANVMSDVQDKCISAGFSDYVTKPVDFIDLSRAM 2048
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: E3QMU1_COLGM (Hsp90-like protein n=1 Tax=Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) TaxID=645133 RepID=E3QMU1_COLGM)

HSP 1 Score: 84.3 bits (207), Expect = 6.040e-16
Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMM---QHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+V+D P  +K+L+K L++ G V ++ A DGV+  +M+    H  YS +L D+ MPR +G    R++R+WE   G   +PI+ +SA+V+S+ +D   +     + TKP+D + L  ++
Sbjct: 1868 KVLLVEDNPVNQKVLQKYLKKVG-VDVEVAADGVECTDMVLARSHNYYSLILCDLHMPRKDGYQACREIRQWERERGFKKLPIIALSANVMSDVHDKCVAAGFSDYVTKPVDFIDLSRAM 1986
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A8K0TLJ1_9PEZI (Peroxide stress-activated histidine kinase mak1 n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TLJ1_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 8.240e-16
Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQ---HTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+V+D P  +K+L+K L++ G V+++ A DGV+  +M+    H  YS +L D+ MPR +G    R++R+WE+ +    +PI+ +SA+V+S+  D   S     + TKP+D + L  ++
Sbjct: 1921 KVLLVEDNPVNQKVLQKYLKKVG-VQVEVAADGVECTDMVLSRGHEYYSLILCDLHMPRKDGYQACREIRQWESENSFGKLPIIALSANVMSDVQDKCVSAGFSDYVTKPVDFIDLSRAM 2039
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A010R6K9_9PEZI (Hsp90-like protein n=5 Tax=Colletotrichum TaxID=5455 RepID=A0A010R6K9_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 8.240e-16
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMM---QHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+V+D P  +K+L+K L++ G V ++ A DG +  EM+    H  YS +L D+ MPR +G    R++R+WE   G   +PI+ +SA+V+S+  D   +     + TKP+D + L  ++
Sbjct: 1934 KVLLVEDNPVNQKVLQKYLKKVG-VEVEVAADGAECTEMVFGHAHNYYSLILCDLHMPRKDGYQACREIRQWEKEQGFKKLPIIALSANVMSDVQDKCVAAGFSDYVTKPVDFIDLSRAM 2052
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A1Q8S1W5_9PEZI (Peroxide stress-activated histidine kinase mak1 n=1 Tax=Colletotrichum chlorophyti TaxID=708187 RepID=A0A1Q8S1W5_9PEZI)

HSP 1 Score: 83.6 bits (205), Expect = 1.120e-15
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMM---QHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+V+D P  +K+LKK L++ G V ++ A DG +  +M+    H  YS +L D+ MPR +G    R++R+WE   G   +PI+ +SA+V+S+  D   +     + TKP+D + L  ++
Sbjct: 1876 KVLLVEDNPVNQKVLKKYLKKVG-VEVEVATDGAECTDMVFARSHNYYSLILCDLHMPRKDGYQACREIRQWEKERGFRKLPIIALSANVMSDVQDKCVAAGFSDYVTKPVDFIDLSRAM 1994
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: UPI0019025BEC (histidine kinase hhk2p n=1 Tax=Colletotrichum karsti TaxID=1095194 RepID=UPI0019025BEC)

HSP 1 Score: 83.6 bits (205), Expect = 1.120e-15
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMM---QHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+V+D P  +K+LKK L++ G V ++ A DG +  +M+    H  YS +L D+ MPR +G    R++R+WE   G   +PI+ +SA+V+S+  D   +     + TKP+D + L  ++
Sbjct: 1876 KVLLVEDNPVNQKVLKKYLKKVG-VEVEVATDGAECTDMVFSHSHNYYSLILCDLHMPRKDGYQACREIRQWEKEKGYKKLPIIALSANVMSDVQDKCVAAGFSDYVTKPVDFIDLSRAM 1994
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BLAST of jgi.p|Trimin1|163660 vs. uniprot
Match: A0A4R8QAQ6_COLTR (Peroxide stress-activated histidine kinase mak1 n=2 Tax=Colletotrichum TaxID=5455 RepID=A0A4R8QAQ6_COLTR)

HSP 1 Score: 83.2 bits (204), Expect = 1.520e-15
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:   13 KVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMM---QHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSL 363
            KVL+VDD P  +K+L+K L++ G V +  A DG +  +M+    H  YS +L D+ MPR +G    R++R+WE   G + +PI+ +SA+V+S+  D   +     + TKP+D + L  ++
Sbjct: 1759 KVLLVDDNPVNQKVLQKYLKKMG-VDVGVAADGAECTDMVFAHSHEYYSLILCDLHMPRKDGYQACREIRQWEREQGLTKLPIIALSANVMSDVRDKCVAAGFSDYVTKPVDFIDLSRAM 1877
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163660 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4I2_9STRA2.660e-102100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZBI1_9STRA2.760e-5878.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI54_9STRA2.210e-5454.78CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
UPI00187618DA2.400e-1636.67histidine kinase hhk2p n=1 Tax=Colletotrichum trun... [more]
E3QMU1_COLGM6.040e-1635.83Hsp90-like protein n=1 Tax=Colletotrichum graminic... [more]
A0A8K0TLJ1_9PEZI8.240e-1635.83Peroxide stress-activated histidine kinase mak1 n=... [more]
A0A010R6K9_9PEZI8.240e-1635.83Hsp90-like protein n=5 Tax=Colletotrichum TaxID=54... [more]
A0A1Q8S1W5_9PEZI1.120e-1535.83Peroxide stress-activated histidine kinase mak1 n=... [more]
UPI0019025BEC1.120e-1535.83histidine kinase hhk2p n=1 Tax=Colletotrichum kars... [more]
A0A4R8QAQ6_COLTR1.520e-1535.83Peroxide stress-activated histidine kinase mak1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:499056..499535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163660|e_gw1.26.263.1
DescriptionHistidine Phosphotransfer domain
COG categoryT
Max annot lvl28216|Betaproteobacteria
EggNOG OGsCOG5000@1|root,COG5002@1|root,COG5000@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2WGK9@28216|Betaproteobacteria,4AK45@80864|Comamonadaceae
Evalue3.78e-17
Seed ortholog1219031.BBJR01000045_gene1818
Hectar predicted targeting categoryother localisation
TranscriptId163982
TrackFilteredModels1
ProteinId163660
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163660gene_1918Tribonema minus UTEX_B_3156 geneContig_26 499056..499535 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1918_1exon_1918_1Tribonema minus UTEX_B_3156 exonContig_26 499056..499535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1918CDS_1918Tribonema minus UTEX_B_3156 CDSContig_26 499056..499535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163660Trimin1|163660|e_gw1.26.263.1Tribonema minus UTEX_B_3156 polypeptideContig_26 499056..499535 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1918 ID=mRNA_1918|Name=jgi.p|Trimin1|163660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_26:499056..499535- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGACTCAAAGTTCTCATTGTGGATGACGTACCGACGTTCAGAAA
GCTGTTGAAGAAGCAGCTGGAGCGCAGGGGCATTGTTCGCATAGATGAAG
CAGGGGACGGTGTGGACGCACTGGAGATGATGCAACATACGCAGTACAGT
GCTGTGCTGATGGACGTGATGATGCCCAGGATGAACGGTGATGTGTGCGC
GAGGAAAATGCGAGAATGGGAAGCGACGCACGGAGGCTCTAGCGTTCCCA
TCCTGCTCATGTCCGCCGACGTGTTATCGGAAGACAACGATGTCGTGGAG
TCGGGTACCGTACAGTACTTTTTCACAAAGCCTATTGACATTGTCAGGCT
CGGCAACTCACTCCGTGACATTGCGGCTGCCAGCTCAAAGTTGGGCAGCT
GGACACAGACGGCAAGCAACAGCACGGGAGTACACACTCCTGTTGACATG
GAGGAGGTCATCGACGTTGTGATACACTGA
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protein sequence of jgi.p|Trimin1|163660

>Trimin1|163660|e_gw1.26.263.1 ID=Trimin1|163660|e_gw1.26.263.1|Name=jgi.p|Trimin1|163660|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp
MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYS
AVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVE
SGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDM
EEVIDVVIH*
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mRNA from alignment at Contig_26:499056..499535-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1918 ID=mRNA_1918|Name=jgi.p|Trimin1|163660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_26:499056..499535- (Tribonema minus UTEX_B_3156 )
ATGAGGAGACTCAAAGTTCTCATTGTGGATGACGTACCGACGTTCAGAAA
GCTGTTGAAGAAGCAGCTGGAGCGCAGGGGCATTGTTCGCATAGATGAAG
CAGGGGACGGTGTGGACGCACTGGAGATGATGCAACATACGCAGTACAGT
GCTGTGCTGATGGACGTGATGATGCCCAGGATGAACGGTGATGTGTGCGC
GAGGAAAATGCGAGAATGGGAAGCGACGCACGGAGGCTCTAGCGTTCCCA
TCCTGCTCATGTCCGCCGACGTGTTATCGGAAGACAACGATGTCGTGGAG
TCGGGTACCGTACAGTACTTTTTCACAAAGCCTATTGACATTGTCAGGCT
CGGCAACTCACTCCGTGACATTGCGGCTGCCAGCTCAAAGTTGGGCAGCT
GGACACAGACGGCAAGCAACAGCACGGGAGTACACACTCCTGTTGACATG
GAGGAGGTCATCGACGTTGTGATACACTGA
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Coding sequence (CDS) from alignment at Contig_26:499056..499535-

>mRNA_1918 ID=mRNA_1918|Name=jgi.p|Trimin1|163660|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_26:499056..499535- (Tribonema minus UTEX_B_3156 )
ATGAGGAGACTCAAAGTTCTCATTGTGGATGACGTACCGACGTTCAGAAA
GCTGTTGAAGAAGCAGCTGGAGCGCAGGGGCATTGTTCGCATAGATGAAG
CAGGGGACGGTGTGGACGCACTGGAGATGATGCAACATACGCAGTACAGT
GCTGTGCTGATGGACGTGATGATGCCCAGGATGAACGGTGATGTGTGCGC
GAGGAAAATGCGAGAATGGGAAGCGACGCACGGAGGCTCTAGCGTTCCCA
TCCTGCTCATGTCCGCCGACGTGTTATCGGAAGACAACGATGTCGTGGAG
TCGGGTACCGTACAGTACTTTTTCACAAAGCCTATTGACATTGTCAGGCT
CGGCAACTCACTCCGTGACATTGCGGCTGCCAGCTCAAAGTTGGGCAGCT
GGACACAGACGGCAAGCAACAGCACGGGAGTACACACTCCTGTTGACATG
GAGGAGGTCATCGACGTTGTGATACACTGA
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