mRNA_1915 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163594
Unique NamemRNA_1915
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163594 vs. uniprot
Match: A0A836CFL9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL9_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.440e-65
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCELCRKQPSFGREWHQPLRCSDHKEDDMEDVVNMRR 282
            MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCELCRKQPSFGREWHQPLRCSDHKEDDMEDVVNMRR
Sbjct:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCELCRKQPSFGREWHQPLRCSDHKEDDMEDVVNMRR 94
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BLAST of jgi.p|Trimin1|163594 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.100e-18
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCEL 183
            +P+C   AK KWC++HR Y +CRA+GCEK S YGIIGGG QWC+ HK   ME V  K CEL
Sbjct:   57 VPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL 117
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BLAST of jgi.p|Trimin1|163594 vs. uniprot
Match: A0A835YV81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV81_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.880e-16
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   64 CRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCELCRKQ 195
            CRADGCEK SAYGIIGGGPQWCVAHKAS M HVT +HCEL RKQ
Sbjct:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCELGRKQ 44
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BLAST of jgi.p|Trimin1|163594 vs. uniprot
Match: A0A835YL77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL77_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.770e-15
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCE 180
            +P+C   AK KWC++HR Y ICRA+GCEK + YGI G G QWC+ HK   ME+V  K CE
Sbjct:   57 VPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCE 116
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BLAST of jgi.p|Trimin1|163594 vs. uniprot
Match: A0A835Z3T1_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.060e-14
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCE 180
            +P C N AK KWC++HR Y ICRA+GCEK SAYGI G G Q C+ H    ME+V  K CE
Sbjct:   40 VPGCGNPAKHKWCEDHRYYKICRAEGCEKRSAYGITGAGAQRCITHNEEGMENVISKRCE 99
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BLAST of jgi.p|Trimin1|163594 vs. uniprot
Match: A0A835Z7J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.440e-12
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  151 MEHVTGKHCELCRKQPSFGREWHQPLRCSDHKEDDME 261
            MEHVT + CELCRK+PSFGREW QP RCSDHKEDDM+
Sbjct:    1 MEHVTKRQCELCRKKPSFGREWLQPTRCSDHKEDDMD 37
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163594 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CFL9_9STRA1.440e-65100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAP8_9STRA8.100e-1860.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YV81_9STRA5.880e-1686.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL77_9STRA1.770e-1556.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z3T1_9STRA2.060e-1458.33EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835Z7J4_9STRA7.440e-1281.08Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:491417..492336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163594|e_gw1.26.226.1
Hectar predicted targeting categoryother localisation
TranscriptId163916
TrackFilteredModels1
ProteinId163594
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163594gene_1915Tribonema minus UTEX_B_3156 geneContig_26 491417..492336 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1915_1exon_1915_1Tribonema minus UTEX_B_3156 exonContig_26 491417..491803 +
exon_1915_2exon_1915_2Tribonema minus UTEX_B_3156 exonContig_26 491905..492336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1915CDS_1915Tribonema minus UTEX_B_3156 CDSContig_26 491417..491803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163594Trimin1|163594|e_gw1.26.226.1Tribonema minus UTEX_B_3156 polypeptideContig_26 491417..492336 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1915 ID=mRNA_1915|Name=jgi.p|Trimin1|163594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_26:491417..492336+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAACTGCTGCAACTCTGCAAAGCTCAAGTGGTGTGATGAACACCG
ATCCTATGTAATCTGCCGGGCAGATGGGTGTGAGAAGGGGTCCGCATATG
GCATCATTGGCGGAGGACCACAGTGGTGCGTAGCTCATAAGGCAAGTGAC
ATGGAGCATGTGACCGGTAAGCACTGTGAGCTCTGCCGCAAGCAGCCTAG
CTTTGGGAGAGAGTGGCATCAGCCTTTACGCTGCTCAGACCACAAGGAGG
ATGACATGGAGGACGTAGTTAACATGCGGCGTTGCGAGCTTTGCAGAAAG
CGAGCTAGCTTGAGGTATGAGTGGAAGAGGCCACTGCGCTGCGCTGATCA
TAAGGAACCAGGTATGTGTAATGTCGAAAGAAGAGGTCAATGTGAGTTCT
GTTCCAAACAGCCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGC
ATAGATCACAGAGACGACGATATGGACAATGTGGTTAGCAAGCAGTGTGC
TCTGTGCTCAATGCGACCCAGCTTCGGCTATGAATGGAAGCTACCACTCC
GCTGCTCGGATCACAGGGAAGAGAACATGGAGGATGTGGTGAATAAGACA
TGTGAGCTCTGCGGCAGGCAACCCAGCCTAGGGTATGAATGGCAGCGCCC
ACTGCGTTGTGCAGCTCATAAGGAGCAGGATATGATAAATGTGGTTGACA
GGAGGTGCGAGCTCTGCACAAAGAGAGCAAGCATTGGGTATGAGTGGAGG
CGCCCGCTGCGCTGTGCAGATCACAAAGCAGAAGGTATGCACAATGTGGT
AACTCAGCGGTGTGAGCAC
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protein sequence of jgi.p|Trimin1|163594

>Trimin1|163594|e_gw1.26.226.1 ID=Trimin1|163594|e_gw1.26.226.1|Name=jgi.p|Trimin1|163594|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASD
MEHVTGKHCELCRKQPSFGREWHQPLRCSDHKEDDMEDVVNMRRCELCRK
RASLRYEWKRPLRCADHKEPGMCNVERRGQCEFCSKQPSYGYHWMRPLRC
IDHRDDDMDNVVSKQCALCSMRPSFGYEWKLPLRCSDHREENMEDVVNKT
CELCGRQPSLGYEWQRPLRCAAHKEQDMINVVDRRCELCTKRASIGYEWR
RPLRCADHKAEGMHNVVTQRCEH
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mRNA from alignment at Contig_26:491417..492336+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1915 ID=mRNA_1915|Name=jgi.p|Trimin1|163594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=920bp|location=Sequence derived from alignment at Contig_26:491417..492336+ (Tribonema minus UTEX_B_3156 )
ATGCCCAACTGCTGCAACTCTGCAAAGCTCAAGTGGTGTGATGAACACCG
ATCCTATGTAATCTGCCGGGCAGATGGGTGTGAGAAGGGGTCCGCATATG
GCATCATTGGCGGAGGACCACAGTGGTGCGTAGCTCATAAGGCAAGTGAC
ATGGAGCATGTGACCGGTAAGCACTGTGAGCTCTGCCGCAAGCAGCCTAG
CTTTGGGAGAGAGTGGCATCAGCCTTTACGCTGCTCAGACCACAAGGAGG
ATGACATGGAGGACGTAGTTAACATGCGGCGTTGCGAGCTTTGCAGAAAG
CGAGCTAGCTTGAGGTATGAGTGGAAGAGGCCACTGCGCTGCGCTGATCA
TAAGGAACCAGGTATGTGTAATGTCGAAAGAAGAGGTGTCAGCTGTGCAG
CACACTGGCAAGTTTTGGGTACGACTGGATGTGCCCGCTGCGCTGTGCAG
GTCACAGAAATGATGATATGGACAACGTGGTTAGCAAGCAATGTGAGTTC
TGTTCCAAACAGCCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTG
CATAGATCACAGAGACGACGATATGGACAATGTGGTTAGCAAGCAGTGTG
CTCTGTGCTCAATGCGACCCAGCTTCGGCTATGAATGGAAGCTACCACTC
CGCTGCTCGGATCACAGGGAAGAGAACATGGAGGATGTGGTGAATAAGAC
ATGTGAGCTCTGCGGCAGGCAACCCAGCCTAGGGTATGAATGGCAGCGCC
CACTGCGTTGTGCAGCTCATAAGGAGCAGGATATGATAAATGTGGTTGAC
AGGAGGTGCGAGCTCTGCACAAAGAGAGCAAGCATTGGGTATGAGTGGAG
GCGCCCGCTGCGCTGTGCAGATCACAAAGCAGAAGGTATGCACAATGTGG
TAACTCAGCGGTGTGAGCAC
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Coding sequence (CDS) from alignment at Contig_26:491417..492336+

>mRNA_1915 ID=mRNA_1915|Name=jgi.p|Trimin1|163594|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_26:491417..492336+ (Tribonema minus UTEX_B_3156 )
ATGCCCAACTGCTGCAACTCTGCAAAGCTCAAGTGGTGTGATGAACACCG
ATCCTATGTAATCTGCCGGGCAGATGGGTGTGAGAAGGGGTCCGCATATG
GCATCATTGGCGGAGGACCACAGTGGTGCGTAGCTCATAAGGCAAGTGAC
ATGGAGCATGTGACCGGTAAGCACTGTGAGCTCTGCCGCAAGCAGCCTAG
CTTTGGGAGAGAGTGGCATCAGCCTTTACGCTGCTCAGACCACAAGGAGG
ATGACATGGAGGACGTAGTTAACATGCGGCGTTGCGAGCTTTGCAGAAAG
CGAGCTAGCTTGAGGTATGAGTGGAAGAGGCCACTGCGCTGCGCTGATCA
TAAGGAACCAGGTATGTGTAATGTCGAAAGAAGAGGTCAATGTGAGTTCT
GTTCCAAACAGCCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGC
ATAGATCACAGAGACGACGATATGGACAATGTGGTTAGCAAGCAGTGTGC
TCTGTGCTCAATGCGACCCAGCTTCGGCTATGAATGGAAGCTACCACTCC
GCTGCTCGGATCACAGGGAAGAGAACATGGAGGATGTGGTGAATAAGACA
TGTGAGCTCTGCGGCAGGCAACCCAGCCTAGGGTATGAATGGCAGCGCCC
ACTGCGTTGTGCAGCTCATAAGGAGCAGGATATGATAAATGTGGTTGACA
GGAGGTGCGAGCTCTGCACAAAGAGAGCAAGCATTGGGTATGAGTGGAGG
CGCCCGCTGCGCTGTGCAGATCACAAAGCAGAAGGTATGCACAATGTGGT
AACTCAGCGGTGTGAGCAC
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