mRNA_1906 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: A0A835Z566_9STRA (FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z566_9STRA) HSP 1 Score: 793 bits (2048), Expect = 3.840e-289 Identity = 391/396 (98.74%), Postives = 393/396 (99.24%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRF 1188 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTE GRRRFSCGYKDRYDFSHQ QGSVDATKGLPWGDAID ITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLN+SR+ Sbjct: 1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRY 396
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: A0A835ZCT3_9STRA (FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT3_9STRA) HSP 1 Score: 735 bits (1898), Expect = 1.410e-265 Identity = 363/394 (92.13%), Postives = 375/394 (95.18%), Query Frame = 1 Query: 10 KSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 ++VHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTS+GA AGA YADT A+YVN I FAAWED I+EIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDL EKS REQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSV+YKDSAGDWRLSDLAPINATTGTALVNSDMK+RLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRP DWN E GRRRFSCGYKDR+DFSHQ QG+VDATKGL WGD +DPITTAS SLNGHQRWPQDQN+ YFRVLTPYTSWRTMPTTNIYTYSFALQA DWQPTAHLN SR + Sbjct: 40 RAVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSSGAGAGAHYADTAAYYVNSIDFAAWEDVILEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLAEKSAREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDSAGDWRLSDLAPINATTGTALVNSDMKLRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPQDWNLEGGRRRFSCGYKDRFDFSHQEQGTVDATKGLAWGDTVDPITTASRSLNGHQRWPQDQNAVYFRVLTPYTSWRTMPTTNIYTYSFALQAQDWQPTAHLNMSRLK 433
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: A0A835Z3V1_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V1_9STRA) HSP 1 Score: 695 bits (1793), Expect = 2.410e-250 Identity = 333/399 (83.46%), Postives = 372/399 (93.23%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFEIL 1197 TI+KSVHTRFTS ALDD+FQELSTSGFASTSTAT+SRYGDL+SRITLEIVLP L APDIPDTSAGA AGALYA+TGA+YVNCIG+A WEDCI+EIGGST+DQLFSDFCFIYEE+AGRAG+RLEEA+GRV FS VD+DLIEKS+REQTLYVPLPLWFSKY PAT+GLALPIVALSFHEIKLKLKTRSIAECVSV+YKD+AGDWRLSDLAPIN TGTALVNSD+K+RLLVS+VYLDVTERNAMSSVAHS LINVTQRQVM+VAAGS++K E KLF NHPC+ L+WY+RPLDWNTE GRRRFSCGYKDR+DFSHQ +GSVD TKGLPWGD++D ITTASLSLNGHQRWP D + YFRV+TP+TSWRTMP+T IY+YSFALQAHDWQPT+HLN+SR + + Sbjct: 1 TIFKSVHTRFTSFALDDDFQELSTSGFASTSTATLSRYGDLISRITLEIVLPALKAPDIPDTSAGASAGALYAETGAYYVNCIGWAVWEDCILEIGGSTIDQLFSDFCFIYEEMAGRAGLRLEEAVGRVAFSEAVDDDLIEKSSREQTLYVPLPLWFSKYNPATFGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDAAGDWRLSDLAPINKATGTALVNSDLKMRLLVSYVYLDVTERNAMSSVAHSMLINVTQRQVMSVAAGSYAKSEQKLFMNHPCTDLIWYLRPLDWNTEGGRRRFSCGYKDRFDFSHQEEGSVDPTKGLPWGDSVDAITTASLSLNGHQRWPADMKANYFRVVTPWTSWRTMPSTPIYSYSFALQAHDWQPTSHLNFSRLDHI 399
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: A0A835Z4S3_9STRA (Large eukaryotic DNA virus major capsid protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S3_9STRA) HSP 1 Score: 563 bits (1450), Expect = 1.000e-195 Identity = 273/398 (68.59%), Postives = 332/398 (83.42%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSD-LAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 TIW+SVHTRFTSCA+DDEFQ+LS SGF ++S+ATI+RYGDL+SR+TLEI LPPL+AP +P T ADT AH+VNCIGFA WED +EIGGS VDQL+SDF IYEELAGR G+RLEEAIGRV FS VDEDLIEK+ ++Q LYVPLPLWFSKYQPAT+GLALPIVAL+FH++++K+KTRSI+EC V+YKD+A W+L++ P+NA TGTALVN+D+KIRL+V+ VYLD TER AMSSV HSFLI+ QRQV ++AA +K E KLFFNHP SSL+W++RPLDWNTEAGRRRFSCG++DRYDF+ + S DA+ LP+GDA+DPI TASL+LNGH RWP D +S YFR+ PY +WRTMPTT+IYTYSFAL+AH WQPT+HLN+SR + Sbjct: 161 TIWRSVHTRFTSCAMDDEFQDLSNSGFDTSSSATINRYGDLISRVTLEITLPPLAAPQVPITGTSPVTYHPAADTAAHWVNCIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEEAIGRVQFSDAVDEDLIEKAKKQQILYVPLPLWFSKYQPATYGLALPIVALTFHDVRIKIKTRSISECTCVLYKDNAA-WKLAENQIPLNANTGTALVNADLKIRLMVTSVYLDTTERTAMSSVVHSFLISTAQRQVHSIAANQSTKQEEKLFFNHPASSLIWFVRPLDWNTEAGRRRFSCGFRDRYDFTAH-EASTDAS--LPYGDAVDPIRTASLTLNGHARWPTDMDSRYFRMHMPYCAWRTMPTTSIYTYSFALEAHQWQPTSHLNFSRLD 554
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: A0A835ZBK3_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBK3_9STRA) HSP 1 Score: 525 bits (1352), Expect = 8.220e-183 Identity = 256/399 (64.16%), Postives = 315/399 (78.95%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGD-WRLSD-LAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 TIW++VHTRFTSCA+DDE QELS SGF ++S+ATI+RYGDL+SR++LEIVLPPL+AP+I A A AD A+YVN IG+A WED +EIGGS VDQL+SDF I+EELAGR G+RLEE IG+V +SA+VD+DLIEK++R+QTLYVPLPLW SKYQPATWGLALPIVAL+FH++++K+KTR IA+C V ++D+ W L + L P+N T T LVNSD+KIRL+++ VYLDVTER AMSSV HSFLIN QRQ+ V A SK+E KL+ NHPCS++ W +RPL+WNT AGRRRFSCG++DRYDFSH+ G+V T LP+G+AI PI ASLSLNGHQRWP D S+YF PY WRTMP T I TYSFAL+A WQPT+ LN+SR + Sbjct: 27 TIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTV--TSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLD 423
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: A0A835Z0V5_9STRA (Putative major capsid protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V5_9STRA) HSP 1 Score: 516 bits (1329), Expect = 5.640e-180 Identity = 253/385 (65.71%), Postives = 314/385 (81.56%), Query Frame = 1 Query: 43 LDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYA--DTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 +DD+FQELS SGF ++S+ATI+RYGDL+SRITLEI LPPL+AP +P A P YA DT AH+VN IGFA WED +EIGGS VDQL+SDF IYEELAGR G+RLEE+IGRVP+SA+VD DLIEK+ + Q LYVPLPLWFSKYQP+T+GLALPIVAL+FH+++LK+KTRSIA+C V+YK+ W L+DLAP+NA+TGT LVN+D+KIRL+VS VYLD TER AMS+V HSFLIN TQRQV ++AAG ++ E KL+FNHP SSL+W +RPLDWNT+AGRRRFSCG+KDR+DF+ D+ L +G+A+DPI ++SLSLNGHQRWP D S YFR PY +WRT+P+T+IY+YSFAL+A WQPT+HLN+SR + Sbjct: 1 MDDDFQELSNSGFDTSSSATINRYGDLISRITLEIRLPPLAAPQVPVVPATNPV-TYYASEDTAAHWVNAIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEESIGRVPYSAEVDLDLIEKAQKAQILYVPLPLWFSKYQPSTYGLALPIVALTFHDVRLKIKTRSIADCTCVVYKED-DVWHLTDLAPLNASTGTTLVNADLKIRLMVSSVYLDTTERTAMSTVTHSFLINTTQRQVHSIAAGQSTRQEEKLYFNHPSSSLIWIVRPLDWNTQAGRRRFSCGFKDRFDFTAYEASDDDS---LIYGNAVDPIVSSSLSLNGHQRWPTDMPSTYFRTHVPYCNWRTLPSTSIYSYSFALEASAWQPTSHLNFSRLD 380
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: Q6XLY6_9PHYC (FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHYC) HSP 1 Score: 326 bits (835), Expect = 5.790e-105 Identity = 179/405 (44.20%), Postives = 257/405 (63.46%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAP-DIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKD---SAGDWRL--SDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 T++K+VH RFTS A D E + S T GF +ATISRYGDLV+ + +EI LPP+ A ++ D S A A D A++VN IGFA + IEIGG+ VD L+ ++ F +EE+ R G RL E IG+ +SADV+ED+IE + + +TLYVPLP WF+KY GL++P++AL++HEIK+K+ R ++EC V+Y+ + G++ P+N+T+G+ LV+SDM +LLVS+VYLD ER+A ++ H++LI TQRQ+ A+ + S + KL+FNHP + L W++RP DW T RRR+S G+ D +D+S + V WGD DP+ TASL+LNGH R+P + +FR P W +Y +SF+LQ WQPT+ LN SR + Sbjct: 2 TLFKTVHRRFTSFAEDLEENDFSAGTVGFGQKVSATISRYGDLVTDMFMEIHLPPIEAAVNVTDASGNTVADA---DKAAYWVNAIGFALISEVQIEIGGTEVDILYPEWMFFWEEMTQRPGARLGEQIGKFTYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMEA-GLSIPLIALTYHEIKVKVTFRPLSECCCVVYRTEDPTHGEYYALAEGKVPVNSTSGSTLVSSDMDAKLLVSYVYLDKKERDAFATTEHTYLITTTQRQMHAITSAGSSSDQIKLYFNHPSNCLTWFVRPTDWMTN--RRRYSVGHMDLFDYSLKSTSDVSV-----WGDVTDPVKTASLTLNGHSRFPDNMPGLFFRQTQPIMKWPNCSNGYMYVFSFSLQGGSWQPTSTLNMSRID 395
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: B5LWE8_9PHYC (Putative major capsid protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE8_9PHYC) HSP 1 Score: 323 bits (828), Expect = 6.560e-104 Identity = 174/404 (43.07%), Postives = 252/404 (62.38%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYK---DSAGDW--RLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 T++K+VH R+TS A D E + S T GF +A +SRYGDLV+ + +E+ LPP+ A + G AD A++VN IG+A + IEIGG+ VD L+ ++ F +E + R G RL E IG+ +SADV+ED+IE + + +TLYVPLP WF+KY T GL++P++AL++HEIK+K+ R ++EC V+Y+ ++ G++ P+N T+G+ LV+SDM +LL+S+VYLD ER+A +S HS+LI TQRQ+ A+ + + + KL+FNHP + L W++RP DW T RRRFS G+ D +DFS V WGD IDP+ +ASL+LNGH R+P +FR P W +Y +SF+LQ WQPT+ LN SR + Sbjct: 2 TLFKTVHKRYTSFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVTDMFMEVALPPIEAAATVTNAEGVEVAD--ADKAAYWVNAIGYALISEIQIEIGGTEVDTLYPEWMFFWESMTQRPGARLGEQIGKFAYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMET-GLSIPLIALTYHEIKVKVTFRPLSECCCVVYRAEDETHGEYFALAEGKTPVNTTSGSTLVSSDMDAKLLISYVYLDKAERDAFASTEHSYLITRTQRQLHAITSAGSASDQIKLYFNHPSNCLAWFVRPTDWTTN--RRRFSVGHMDSFDFSLHTDSDVSV-----WGDVIDPVKSASLNLNGHSRFPDGMPGLFFRQTQPIMKWPNCSDGFMYVFSFSLQGGAWQPTSTLNMSRID 395
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: Q8QNG3_ESV1K (EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K) HSP 1 Score: 323 bits (829), Expect = 1.620e-103 Identity = 178/407 (43.73%), Postives = 255/407 (62.65%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATW---GLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWR-----LSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFE 1191 T++KS H R+T+ A D E + S T GF +A +SRYGDLVS + LE+ LP + A + AG AD A++VN IG+A + IEIGG+ VD L+S++ F++EEL R G RL E IG+ +SADV+ED+IE +++E+ LYVPLP WF+KY W GL++P++AL++HEIK+K+ R +A+C +V+Y++S W +D PIN + +A+ SDM RLLVS+VYLD ER A +SV H +LI TQRQ+ ++ + S + KL+FNHP ++L+W++RP D+ RRRFS G+KD +DFS Q + DAT + WGD D + +ASL+LNGH R+P +FR + P W P Y ++FA W PT+ LN SR + Sbjct: 2 TLFKSQHKRYTNFAEDFEENDFSAGTVGFGQRVSANVSRYGDLVSDVLLEVTLPAIQASESVVNGAGTEVAD--ADKAAYWVNAIGYAIISEVEIEIGGTEVDTLYSEWMFLWEELTQRPGARLGEQIGKFAYSADVEEDMIEFASQERKLYVPLPFWFNKY----WMEHGLSIPLIALTYHEIKIKVSFRPLADCCAVVYRESDPTWGDYWALAADKIPINTASASAMAASDMDARLLVSYVYLDQEERQAFASVQHEYLITTTQRQMHSITSASAKSDQLKLYFNHPSNALIWFVRPTDFKNL--RRRFSVGHKDMFDFSLQKE---DATVSM-WGDVTDSVASASLTLNGHSRFPDSLPGLFFRQVQPALKWPNTPAGYTYLFTFAALGGVWNPTSTLNMSRID 396
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Match: Q4H484_HAV01 (Hypothetical major capsid protein n=1 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q4H484_HAV01) HSP 1 Score: 167 bits (422), Expect = 1.290e-43 Identity = 127/404 (31.44%), Postives = 209/404 (51.73%), Query Frame = 1 Query: 1 TIWKSVHTRFTSCALDDEFQELS-TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMR--LEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLF--FNHPCSSLLWYMRPLDWNTEAGRRRFSCGYKDRYDFSHQPQGSVDATKGLPWGDAIDPITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNYSRFEIL 1197 T +K V+ R T+ A++ Q + T+ F T TISR GDL++ + L++ LP LS + ++G+P T + N IG A + +EIGG +D+ F + I++EL + + IG+ +++++ LI S E+ Y+PL WF + GL+LP+VAL +HE+K+ ++ R+ EC+ V K + + D A TT T + N+ +L V ++YLD ER ++ +H +L+ Q Q + SFS+ KL FNHP LLW ++ + +T AG Y D ++FS G+ + A+D + A L LNGH+R+ + YFR++ PY +P +IY YSFA++ + QP+ N+SR + + Sbjct: 25 TFFKVVYRRHTNFAIESIEQTFNGTADFGKKVTCTISRNGDLINHVYLQVQLPSLSTGLV---ASGSP-------TYVSWTNAIGHALIRNVEVEIGGQRIDRQFGTWLEIWDELTMTTEKKNGYNQMIGK--YASELG--LIGNSYYERIYYIPLQFWFCRNP----GLSLPLVALQYHEVKIIIEFRNAHECI-VALKANGDRVAIGDNATTFTTTPT-ITNA----QLYVDYIYLDTNERKLFAATSHEYLVE--QLQFTGAESLSFSQQNQKLRLNFNHPVKELLWVLQRDENSTSAG-----TAYNDWFNFSAAAPGTPSPSH------AVDLLADAKLLLNGHERFTV-RPQTYFRLVQPYQHHTRIPDKHIYLYSFAIRPEEHQPSGTCNFSRIDTV 390 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163535 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1906 ID=mRNA_1906|Name=jgi.p|Trimin1|163535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1218bp|location=Sequence derived from alignment at Contig_26:469283..470500+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACGATATGGAAAAGCGTCCACACGCGCTTCACTTCCTGCGCCCTAGATGAback to top protein sequence of jgi.p|Trimin1|163535 >Trimin1|163535|e_gw1.26.275.1 ID=Trimin1|163535|e_gw1.26.275.1|Name=jgi.p|Trimin1|163535|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=406bp TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVback to top mRNA from alignment at Contig_26:469283..470500+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1906 ID=mRNA_1906|Name=jgi.p|Trimin1|163535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1218bp|location=Sequence derived from alignment at Contig_26:469283..470500+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:469283..470500+ >mRNA_1906 ID=mRNA_1906|Name=jgi.p|Trimin1|163535|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1218bp|location=Sequence derived from alignment at Contig_26:469283..470500+ (Tribonema minus UTEX_B_3156 )back to top |