mRNA_190 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157349
Unique NamemRNA_190
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A835Z688_9STRA (Family 5 glycoside hydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z688_9STRA)

HSP 1 Score: 692 bits (1787), Expect = 2.710e-252
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query:    1 MLASDLQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAKTRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGEFVYGLADAVLQGKADADKSHATAAKHVRR 1002
            MLASDLQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAKTRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGEFVYGLADAVLQGKADADKSHATAAKHVRR
Sbjct:    1 MLASDLQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAKTRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGEFVYGLADAVLQGKADADKSHATAAKHVRR 334          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A836CAG2_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG2_9STRA)

HSP 1 Score: 235 bits (600), Expect = 4.550e-72
Identity = 141/342 (41.23%), Postives = 187/342 (54.68%), Query Frame = 1
Query:    1 MLASDLQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLKSDPYFVQQ------LTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFD----------IAKTRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGEFVYGLADAVLQGKADADKSHA 978
            MLA DL  L +GFNLG  FD+   S D    VK  +  ++ KGFTHVRIPV+W        +SD YF  +      L  AV+Y+V + L VI+D HHE WL + +D S  ++  F+ +W DI+  F   S D L+F+VLNEP   F           I++TR +NQ GYD IR+ T T  +L M                   LPG G D  LA++VH+Y P  F L  GSNDVF TV  V A +  R A+ +++   SG   M+ +EFGVGA  +DQ+RRGD RV  FY+ TA          +VW D   F VR + G +VYGLADA+++G  DA  + A
Sbjct:    1 MLAKDLSALRLGFNLGQTFDNADKSTD-PARVKPLLKAYRDKGFTHVRIPVSW-------RRSDDYFFNKTKFMTDLMTAVQYSVDIGLAVILDAHHEQWLHERYDDSQAVRDKFKDMWKDIAGKFRTFSPDKLVFEVLNEPQVKFGDTDDCMREPFISRTRAINQAGYDGIRSATATHLVLAM-------------------LPGGGVDPCLAVAVHSYTPNAFCLPSGSNDVFPTVDAVRAFLSDRAAKTRRYSDASGIYVMM-NEFGVGA--EDQSRRGDPRVAAFYYETAKNFLQRGIALSVWDDSGSFAVRDDRGTWVYGLADAMIKGARDATTAPA 312          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A835ZM96_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM96_9STRA)

HSP 1 Score: 222 bits (566), Expect = 6.870e-67
Identity = 128/327 (39.14%), Postives = 177/327 (54.13%), Query Frame = 1
Query:   16 LQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAK----------TRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKW---IARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGE----FVYGLADAVL 945
            L ++G+G NLG  F+S+ NS   D  V+  ++  KAKGF HVRIPVTW     C L  D  FV  L  A++YAV + L ++++ HHE WL D++DGS    A F+ LW+ I++ +   +   L+F+VLNEP   F I            TR +N+ GY+ IR V  TR +L   ND G+ +    VYPT A LPGAG D  + +  HTY    F LQ G+N  + +V +++A I KR A L KW   I     V +   EFGVG R D + R  D+ VR +Y  T+ L   +   CT W D  WF +          + +GLAD +L
Sbjct:    9 LSEIGIGLNLGQVFESKQNSRRPD-QVRPWLAAVKAKGFGHVRIPVTWYPSDACVL-DDSEFVHLLDDAIQYAVKIGLTLVINAHHEKWLFDYYDGSDVFNAKFKALWSRIAYKYRAYTQQQLLFEVLNEPDGKFGIGSASTTTGCIELTRTINRVGYEGIRYVDATRIVLVQPNDAGNIWAVPRVYPTKATLPGAGADKSVGIQCHTYDHYNFCLQGGTNAFYKSVDDISADIGKRVAMLMKWHTDIGGQDTVALHLGEFGVG-RLDQRQRDADI-VRAYYRITSKLFRDKSICCTAWSDNGWFALTTMDASRRVTWPFGLADQIL 331          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A835Z601_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z601_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.870e-64
Identity = 131/334 (39.22%), Postives = 183/334 (54.79%), Query Frame = 1
Query:   16 LQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGK---CKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFD-----------IAKTRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKW---IARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPC-TVWCDQSWFGVRHESG----EFVYGLADAVLQG 951
            L  +G+G NLG  F+S+ NS      V+  +   + KGF HVRIPVTW Y G    C+L +D  F+Q L  +++YAV + L VI++THHE W+ D +DGS      F++LWT I+  +     + LIF+VLNEP   F            IA TRL+N  G +AIRAV +TR +L   N MG+ +    VYP+   LPG+G D  L +  HTY   +F LQ GSN+ + ++ E+ A I KR   +KKW   I  +  V +   EFGVG  D    R+ D  + + Y+R  +L   +K  C T W D  WF V         +F +GLAD V++G
Sbjct:   10 LGDIGIGVNLGQTFESKMNSRQ-PAQVRPWLLGIRQKGFGHVRIPVTW-YPGNSHACQL-NDALFMQCLDNSIEYAVKIGLAVILNTHHEDWIIDGYDGSDLYNVKFKKLWTQIATRYKRYPQNKLIFEVLNEPSGKFGKPDESADSSECIALTRLINLVGLEAIRAVDSTRIVLVQPNAMGNVWSVPKVYPSKDTLPGSGADKYLGVQFHTYDHYKFCLQAGSNEYYKSLNELRADIQKRVEMIKKWHVTIGGNDVVALHLGEFGVGRLDQ---RQRDADIVKAYYRLTSLLYRQKGICVTAWSDGGWFNVASLDSRGTVQFPFGLADMVIKG 337          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A813JL32_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JL32_POLGL)

HSP 1 Score: 207 bits (527), Expect = 2.990e-61
Identity = 121/322 (37.58%), Postives = 171/322 (53.11%), Query Frame = 1
Query:   25 LGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEP------------PSNFD---IAKTRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGEFVYGLADAVL 945
            +G G NLGN FD         +S+ R I  F  KGF +VRIPVTW               Q +T+AVKYA+    +V+++THHE WLKD ++ +      F  LW  I+  FA+ S   L+F++LNEP            PS F+   I  TR VN  GY+A+R+V+ TR +    N  GS      +YP A+ LPGAG D  L ++VH+Y P +F  QD  N  F ++  + +S+ +RF     W   +G V   W E+G+G R  + + R    VRE+Y    N  ++  W  +VW DQ WF + ++   +VYGLADAVL
Sbjct:    1 MGRGINLGNTFDMTGMQNRSKSSIGRMIHLFWKKGFRNVRIPVTW----GDSFNESSLLTQGVTEAVKYALDKGFYVVLNTHHERWLKDAYNNTPYYNDRFAALWRGIATHFANASC-RLVFEILNEPDGALGSFASPDAPSPFNETQINLTRAVNLVGYEAVRSVSNTRIVFVAPNGQGSNALISTIYPNASYLPGAGSDPYLGVTVHSYDPWDFCGQDSRNSHFKSLFAMKSSLTERFNTFSDWYYATG-VPTHWGEYGLGRRPQNNSDRDTDMVREYYKFVTNSLALHGWASSVWDDQGWFAITNDYS-YVYGLADAVL 315          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: E6X935_CELAD (Glycoside hydrolase family 5 n=3 Tax=Cellulophaga TaxID=104264 RepID=E6X935_CELAD)

HSP 1 Score: 192 bits (489), Expect = 7.180e-55
Identity = 123/338 (36.39%), Postives = 176/338 (52.07%), Query Frame = 1
Query:   22 KLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWI--YKGKCKLKSD-------PYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFD----------------IAKTRLVNQWGYDAIRAV---TTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFG-VRHESGEFVYGLADAVLQ 948
            ++  GFN+GN FD+  N+  F +SVK  I  +K  G  HVRIP TW+  ++G     +D       P F++ L + + YA+S +++V+++THHESWLKD++DGS++    FE LWT I+  F D     LIF+VLNEP  N                  +A TR VN+ GYDAIR+     TTR ++   N  G+      VYP  A LPGAG+DA LA+ VH+Y P  F  + GSN  F   +     I +         A +  V + + EFGVG R+ +   R    VR +Y   AN    +    TVW D+ WFG +   +  F Y +   +L+
Sbjct:   51 EMNAGFNVGNTFDNNVNNPTF-SSVKPIIDFYKEAGMDHVRIPTTWMDRFEGDHLADADGNINVNHPRFLE-LVQVIDYAISQEMYVVLNTHHESWLKDNYDGSSSFDIKFETLWTGIATYFKDYPS-FLIFEVLNEPEGNLGENDGTGPFPDPTDPTALAYTRKVNKIGYDAIRSTGSNNTTRLVMVGVNSQGNALYIDEVYPDKASLPGAGEDAFLAIQVHSYSPWAFCGETGSNAAFPGNSFFETGIQEVSVH-----AATLDVPVNYGEFGVG-RETNVEERNTAIVRGYYKTFANATLGQSMSFTVWDDRGWFGLINSNATAFTYDIVPTMLE 379          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: UPI000C289B98 (glycoside hydrolase family 5 protein n=1 Tax=Confluentibacter citreus TaxID=2007307 RepID=UPI000C289B98)

HSP 1 Score: 191 bits (486), Expect = 2.570e-54
Identity = 124/334 (37.13%), Postives = 171/334 (51.20%), Query Frame = 1
Query:   25 LGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYK---------GKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEP-------------PSNFD-IAKTRLVNQWGYDAIRAV---TTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESG-EFVYGLADAVL 945
            +G GFNLGN F++  N+  +  + K  I  FK  G  H+RIPVTW+ +         G   +       ++L K + YA+SL L+V+++THHE WLKD ++GSAT    F  LWT I+  F D S   LIF+VLNEP             P+N   +  TR VN+ GYDAIRA     TTR ++   N  G+    + VYP+ A LPG G D  L++ VH+Y P  F  Q GSN  F   +    +I K         +R   V + + EFGVG RD + A R    VR +Y   A     E    +VWCD+ WFG+ + +G  F   +   +L
Sbjct:   62 MGPGFNLGNTFENGNNTTTY-VAAKPIIDLFKNAGMKHIRIPVTWMDRFTANDHLADGNGNVDYQNTRFKELVKVIDYAISLDLYVVINTHHEHWLKDFYNGSATFDNKFSTLWTGIATYFKDYSHK-LIFEVLNEPEGTLGEWGGTWPDPNNATALTYTRKVNKVGYDAIRAAGGNNTTRLVMVGTNGQGNEVMIEEVYPSKATLPGGGTDKYLSIQVHSYNPWAFCGQTGSNAAFPGNSTFENAIKKVGIH-----SRLLDVPVNYGEFGVG-RDGNTAERNTDIVRGYYKTFATTTLSENMSYSVWCDRGWFGLINSTGTSFTNNIVPTML 387          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A836CFT8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT8_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.490e-53
Identity = 115/298 (38.59%), Postives = 167/298 (56.04%), Query Frame = 1
Query:   25 LGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKG--KCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAK------TRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASI----DKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKW-PCTVWCD 879
            +G G NLGN  D+  N+ D +  + R ++  + KGF HVRIPVTW   G  KC++ S P FV  +  AV  A++L   VI++ HHE+WL   +DGS+ + A F  LW  ++  F  +  D L+F++LNEP              TR +N  GY+A+RA++ TR +L   N++G  + A+A Y T + LPG GKD  LA++VH+YGPP+FAL  GSN  F  +A+  A++     K  A+L K     G   +   EFGVG   ++ A R D  +   Y+RT    + +   P TVW D
Sbjct:   12 MGTGINLGNTLDNAQNNRDTEV-IARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNS-PSFVALVEGAVNAAIALGFTVILNAHHEAWLTS-YDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGR--ENLADR-DAPIVHLYYRTIAKAARDACIPPTVWDD 303          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A7G5XMK6_9BACT (Cellulase family glycosylhydrolase n=2 Tax=Lacibacter sp. S13-6-6 TaxID=2760713 RepID=A0A7G5XMK6_9BACT)

HSP 1 Score: 188 bits (478), Expect = 2.440e-53
Identity = 123/325 (37.85%), Postives = 170/325 (52.31%), Query Frame = 1
Query:   16 LQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLK--------SDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEP--------------PSNFD-IAKTRLVNQWGYDAIRAV---TTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESG 912
            ++ +  GFNLGN F++  NS    T+ K+ I  + + G  HVRIP+TW+      L         S P  ++ L + V YA++ K++V+++THHE WLKD++DGSA     F  LW  I+  F D     L+F+VLNEP              P+N   I  TR +N+ GYDAIRA      TR ++   N  G+    + VYPT A LPGAG DA LA+ VHTY P  F  Q GSN  +   A +  +I K+     K I     V + + EFGVG + +   R  DL VR +Y      C  EK   T W D+ WFG+ ++SG
Sbjct:   40 IEDMAAGFNLGNTFENGINSSSPATN-KQIIDLYYSAGMRHVRIPITWVQGFSSNLADANGNVNVSHPRLLE-LKEIVDYALAKKMYVVINTHHEHWLKDNYDGSAAFDTKFATLWNGIATFFKDYPKQ-LLFEVLNEPEGAMGQWSGTGYPLPTNAQAIDYTRKINKVGYDAIRATGGNNITRLVMVSPNGQGNQGMIEEVYPTKASLPGAGNDAYLAIQVHTYDPWAFCGQTGSNAAWPGSASIENAI-KKVGVHSKLI----DVPINYGEFGVGRQSNTGERNTDL-VRGYYKLFRVTCKAEKMSFTPWDDRGWFGLIYKSG 355          
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Match: A0A4R0ZZJ9_9FLAO (Carbohydrate-binding protein n=1 Tax=Tenacibaculum sp. M341 TaxID=2530339 RepID=A0A4R0ZZJ9_9FLAO)

HSP 1 Score: 196 bits (497), Expect = 2.810e-53
Identity = 127/349 (36.39%), Postives = 177/349 (50.72%), Query Frame = 1
Query:   16 LQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIY----------KGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNF----------------DIAKTRLVNQWGYDAIRAV---TTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVRHESGEFVYGLADAVLQGKADADKSH 975
            ++ +G GFNLGN FD   NS DF TS K  I  +  +G  H+RIP +WI            G  K K+ P F + L   + Y +   L+V+++THHE WLK+H+DGS  L   F  LW +I++ F   SD  LIF+VLNEP  N                  +A TR + + GY+AIRA     +TR I+   N  G+      VY    DLPG G D  LA+ VHTY P +F  QDG+N  +     +  SI   +       A++  V + + EFGVG R++   R  D+ VREFY   AN+        T+W D+ WF + ++ G F Y +   +L GK    KS+
Sbjct:  316 VKSMGPGFNLGNVFDLGLNSTDF-TSFKFLIDAYVNQGMQHIRIPTSWIEHVNGDAIAEENGNLK-KNHPRF-KSLETTINYCLDAGLYVVLNTHHERWLKEHYDGSNYLNNRFANLWKNIANHFEGYSDK-LIFEVLNEPEGNMGQWDGPGGAPDPMNPQQLAYTRQIMRVGYNAIRATGGNNSTRLIMLATNAQGNHTLIDEVYRNKNDLPGNGNDEYLAIQVHTYDPWQFCGQDGNNSNYPGATTIENSIITTYNH-----AQTLGVPLHYGEFGVGRRNNQAERNSDI-VREFYRVIANITLNNDMAFTIWDDRGWFRLINDDGTFTYNIVPFML-GKTSVKKSN 653          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157349 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z688_9STRA2.710e-252100.00Family 5 glycoside hydrolase n=2 Tax=Tribonema min... [more]
A0A836CAG2_9STRA4.550e-7241.23Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835ZM96_9STRA6.870e-6739.14Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z601_9STRA1.870e-6439.22Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A813JL32_POLGL2.990e-6137.58Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
E6X935_CELAD7.180e-5536.39Glycoside hydrolase family 5 n=3 Tax=Cellulophaga ... [more]
UPI000C289B982.570e-5437.13glycoside hydrolase family 5 protein n=1 Tax=Confl... [more]
A0A836CFT8_9STRA1.490e-5338.59Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A7G5XMK6_9BACT2.440e-5337.85Cellulase family glycosylhydrolase n=2 Tax=Lacibac... [more]
A0A4R0ZZJ9_9FLAO2.810e-5336.39Carbohydrate-binding protein n=1 Tax=Tenacibaculum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:673172..674176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157349|e_gw1.3.306.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K01179
EC3.2.1.4
DescriptionCellulase (glycosyl hydrolase family 5)
COG categoryG
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG2730@1|root,COG2730@2|Bacteria,4NK8X@976|Bacteroidetes,1IIH9@117743|Flavobacteriia
Evalue1.18e-55
Seed ortholog688270.Celal_3584
Hectar predicted targeting categoryother localisation
TranscriptId157671
TrackFilteredModels1
ProteinId157349
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157349gene_190Tribonema minus UTEX_B_3156 geneContig_3 673172..674176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_190_1exon_190_1Tribonema minus UTEX_B_3156 exonContig_3 673172..674176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_190CDS_190Tribonema minus UTEX_B_3156 CDSContig_3 673172..674176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157349Trimin1|157349|e_gw1.3.306.1Tribonema minus UTEX_B_3156 polypeptideContig_3 673172..674176 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_190 ID=mRNA_190|Name=jgi.p|Trimin1|157349|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_3:673172..674176- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCGTCTGATTTGCAGAAATTAGGCGTAGGGTTCAACCTTGGAAA
CCGCTTTGATTCGAGAACGAACTCCATTGATTTTGACACCTCTGTGAAGC
GCGCCATCAGTGACTTCAAGGCCAAAGGCTTTACTCATGTCCGCATCCCT
GTCACATGGATATACAAAGGGAAGTGCAAATTGAAGTCAGATCCCTACTT
TGTGCAGCAACTCACAAAGGCCGTCAAGTACGCCGTGTCGCTGAAACTGT
TTGTCATCGTCGACACTCACCATGAGTCGTGGCTCAAGGATCACTTCGAT
GGATCAGCGACGCTCAAGGCGACATTTGAACAATTGTGGACGGACATCTC
GCATTTGTTTGCGGACATCAGCGATGACGCCCTCATCTTCCAGGTCCTCA
ACGAGCCACCGAGCAATTTTGACATCGCCAAGACGCGCCTCGTGAATCAG
TGGGGCTACGACGCCATTCGGGCGGTGACAACGACCCGGTGCATTCTATG
CATGGGTAACGACATGGGGTCACCTTTCGGTGCGAAAGCTGTGTATCCGA
CGGCTGCAGATCTGCCCGGGGCAGGCAAGGATGCCAGGCTCGCCTTGAGC
GTGCATACCTACGGCCCCCCCGAGTTTGCACTGCAAGATGGCAGCAATGA
CGTGTTTGCCACTGTAGCAGAGGTGACGGCTTCCATCGACAAGCGCTTCG
CGCAGTTGAAGAAGTGGATTGCTAGGTCTGGTCACGTTACAATGGTGTGG
GATGAGTTTGGCGTCGGTGCTCGAGATGATGACCAAGCGCGACGGGGGGA
TCTGCGGGTTCGCGAGTTCTATCACCGCACAGCAAACCTCTGCAGCATGG
AGAAGTGGCCGTGTACAGTCTGGTGCGATCAGTCATGGTTTGGTGTCCGC
CATGAAAGTGGGGAATTCGTATACGGACTGGCGGACGCGGTGTTGCAGGG
GAAGGCCGACGCGGACAAAAGCCATGCCACGGCCGCGAAGCACGTCCGGC
GTTGA
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protein sequence of jgi.p|Trimin1|157349

>Trimin1|157349|e_gw1.3.306.1 ID=Trimin1|157349|e_gw1.3.306.1|Name=jgi.p|Trimin1|157349|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MLASDLQKLGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIP
VTWIYKGKCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFD
GSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAKTRLVNQ
WGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALS
VHTYGPPEFALQDGSNDVFATVAEVTASIDKRFAQLKKWIARSGHVTMVW
DEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKWPCTVWCDQSWFGVR
HESGEFVYGLADAVLQGKADADKSHATAAKHVRR*
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mRNA from alignment at Contig_3:673172..674176-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_190 ID=mRNA_190|Name=jgi.p|Trimin1|157349|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_3:673172..674176- (Tribonema minus UTEX_B_3156 )
ATGCTCGCGTCTGATTTGCAGAAATTAGGCGTAGGGTTCAACCTTGGAAA CCGCTTTGATTCGAGAACGAACTCCATTGATTTTGACACCTCTGTGAAGC GCGCCATCAGTGACTTCAAGGCCAAAGGCTTTACTCATGTCCGCATCCCT GTCACATGGATATACAAAGGGAAGTGCAAATTGAAGTCAGATCCCTACTT TGTGCAGCAACTCACAAAGGCCGTCAAGTACGCCGTGTCGCTGAAACTGT TTGTCATCGTCGACACTCACCATGAGTCGTGGCTCAAGGATCACTTCGAT GGATCAGCGACGCTCAAGGCGACATTTGAACAATTGTGGACGGACATCTC GCATTTGTTTGCGGACATCAGCGATGACGCCCTCATCTTCCAGGTCCTCA ACGAGCCACCGAGCAATTTTGACATCGCCAAGACGCGCCTCGTGAATCAG TGGGGCTACGACGCCATTCGGGCGGTGACAACGACCCGGTGCATTCTATG CATGGGTAACGACATGGGGTCACCTTTCGGTGCGAAAGCTGTGTATCCGA CGGCTGCAGATCTGCCCGGGGCAGGCAAGGATGCCAGGCTCGCCTTGAGC GTGCATACCTACGGCCCCCCCGAGTTTGCACTGCAAGATGGCAGCAATGA CGTGTTTGCCACTGTAGCAGAGGTGACGGCTTCCATCGACAAGCGCTTCG CGCAGTTGAAGAAGTGGATTGCTAGGTCTGGTCACGTTACAATGGTGTGG GATGAGTTTGGCGTCGGTGCTCGAGATGATGACCAAGCGCGACGGGGGGA TCTGCGGGTTCGCGAGTTCTATCACCGCACAGCAAACCTCTGCAGCATGG AGAAGTGGCCGTGTACAGTCTGGTGCGATCAGTCATGGTTTGGTGTCCGC CATGAAAGTGGGGAATTCGTATACGGACTGGCGGACGCGGTGTTGCAGGG GAAGGCCGACGCGGACAAAAGCCATGCCACGGCCGCGAAGCACGTCCGGC GTTGA
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Coding sequence (CDS) from alignment at Contig_3:673172..674176-

>mRNA_190 ID=mRNA_190|Name=jgi.p|Trimin1|157349|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_3:673172..674176- (Tribonema minus UTEX_B_3156 )
ATGCTCGCGTCTGATTTGCAGAAATTAGGCGTAGGGTTCAACCTTGGAAA
CCGCTTTGATTCGAGAACGAACTCCATTGATTTTGACACCTCTGTGAAGC
GCGCCATCAGTGACTTCAAGGCCAAAGGCTTTACTCATGTCCGCATCCCT
GTCACATGGATATACAAAGGGAAGTGCAAATTGAAGTCAGATCCCTACTT
TGTGCAGCAACTCACAAAGGCCGTCAAGTACGCCGTGTCGCTGAAACTGT
TTGTCATCGTCGACACTCACCATGAGTCGTGGCTCAAGGATCACTTCGAT
GGATCAGCGACGCTCAAGGCGACATTTGAACAATTGTGGACGGACATCTC
GCATTTGTTTGCGGACATCAGCGATGACGCCCTCATCTTCCAGGTCCTCA
ACGAGCCACCGAGCAATTTTGACATCGCCAAGACGCGCCTCGTGAATCAG
TGGGGCTACGACGCCATTCGGGCGGTGACAACGACCCGGTGCATTCTATG
CATGGGTAACGACATGGGGTCACCTTTCGGTGCGAAAGCTGTGTATCCGA
CGGCTGCAGATCTGCCCGGGGCAGGCAAGGATGCCAGGCTCGCCTTGAGC
GTGCATACCTACGGCCCCCCCGAGTTTGCACTGCAAGATGGCAGCAATGA
CGTGTTTGCCACTGTAGCAGAGGTGACGGCTTCCATCGACAAGCGCTTCG
CGCAGTTGAAGAAGTGGATTGCTAGGTCTGGTCACGTTACAATGGTGTGG
GATGAGTTTGGCGTCGGTGCTCGAGATGATGACCAAGCGCGACGGGGGGA
TCTGCGGGTTCGCGAGTTCTATCACCGCACAGCAAACCTCTGCAGCATGG
AGAAGTGGCCGTGTACAGTCTGGTGCGATCAGTCATGGTTTGGTGTCCGC
CATGAAAGTGGGGAATTCGTATACGGACTGGCGGACGCGGTGTTGCAGGG
GAAGGCCGACGCGGACAAAAGCCATGCCACGGCCGCGAAGCACGTCCGGC
GTTGA
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