mRNA_18985 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835ZBI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI0_9STRA) HSP 1 Score: 259 bits (661), Expect = 7.550e-79 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
Query: 1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL
Sbjct: 579 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 706
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YGJ9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGJ9_9STRA) HSP 1 Score: 255 bits (651), Expect = 6.170e-77 Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 1
Query: 1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKG+QCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGG+LARDDKADWRGVHERL
Sbjct: 666 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGLQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGELARDDKADWRGVHERL 793
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A836CA60_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA60_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.530e-63 Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 1
Query: 1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 306
IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVIS NDCGLPTKRRRVFIM
Sbjct: 60 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 161
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YZF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF8_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.980e-47 Identity = 87/101 (86.14%), Postives = 89/101 (88.12%), Query Frame = 1
Query: 1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFI 303
IAEA RLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIIS LQVSAA+STVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVISGND R V +
Sbjct: 89 IAEACRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISKLQVSAAISTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDVTKRIPHRHVVV 189
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YYY1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY1_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.410e-39 Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRG 318
I EA RLGVEV GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q L A+ LGF SH+V++G+DCGLPT RRRVF++ TRG
Sbjct: 58 ITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 163
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835ZBG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.470e-18 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query: 1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 126
IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV
Sbjct: 701 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 742
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YXD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD3_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.320e-17 Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 193 EFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
E+Q L A+ LGF SH+VI G+DCGLPT RRRVF++FTRGR G LA +D ADW GVH RL
Sbjct: 2289 EWQHTLGAARTLGFSFSHHVIRGDDCGLPTMRRRVFLVFTRGRPAGSGLAEEDAADWAGVHARL 2352
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835Z6Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.780e-16 Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 193 EFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
E+Q L A+ LGF SH+V+ G+DCGLPT RRVF++FTRGR G LA +D ADW GVH RL
Sbjct: 2397 EWQHTLAAARALGFSFSHHVVRGDDCGLPTMWRRVFLVFTRGRPAGSGLAEEDAADWAGVHARL 2460
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A6N7ZQ56_9HYPH (Cytosine-specific methyltransferase n=2 Tax=Roseibium sp. RKSG952 TaxID=2529384 RepID=A0A6N7ZQ56_9HYPH) HSP 1 Score: 60.1 bits (144), Expect = 4.710e-8 Identity = 30/94 (31.91%), Postives = 58/94 (61.70%), Query Frame = 1
Query: 28 EVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTV-RMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 306
EV +GGPPC D+S +GKR +G + +++ A + + ++ ++ENV + + ++QA DL + G+ + V+ + CG+P KR+R+F++
Sbjct: 67 EVIAGGPPCQDYSSAGKR--NEGGRASLTLEFADAVIYALPKVFIMENVEPAIRSETYRQANDLFRAAGYGLTQRVLDASLCGVPQKRKRLFVV 158
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: UPI001BDD7A2F (DNA cytosine methyltransferase n=1 Tax=Canibacter sp. lx-72 TaxID=2837491 RepID=UPI001BDD7A2F) HSP 1 Score: 52.4 bits (124), Expect = 2.370e-5 Identity = 27/94 (28.72%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 28 EVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVST-VRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 306
++ GG PC DFS +G + KG + ++S+ A V+ + ++ENV +T F + L G+ + V+ + CG+P +R+R+F++
Sbjct: 78 DIIVGGAPCQDFSTAGHQDESKG-RAVLSVRFAEAVVAVRPKYFVMENVATIRNTESFAAVIKLLSRAGYGLTQRVLDASYCGVPQRRKRMFLI 170 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18985 ID=mRNA_18985|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_455:2718..3101+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATAGCGGAGGCACGCCGACTTGGGGTTGAAGTCTCCAGCGGTGGACCCCCback to top protein sequence of jgi.p|Trimin1|155203 >Trimin1|155203|gw1.455.3.1 ID=Trimin1|155203|gw1.455.3.1|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRback to top mRNA from alignment at Contig_455:2718..3101+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18985 ID=mRNA_18985|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_455:2718..3101+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_455:2718..3101+ >mRNA_18985 ID=mRNA_18985|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_455:2718..3101+ (Tribonema minus UTEX_B_3156 )back to top |