mRNA_18985 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155203
Unique NamemRNA_18985
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835ZBI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI0_9STRA)

HSP 1 Score: 259 bits (661), Expect = 7.550e-79
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
Query:    1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
            IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL
Sbjct:  579 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 706          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YGJ9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGJ9_9STRA)

HSP 1 Score: 255 bits (651), Expect = 6.170e-77
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 1
Query:    1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
            IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKG+QCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGG+LARDDKADWRGVHERL
Sbjct:  666 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGLQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGELARDDKADWRGVHERL 793          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A836CA60_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA60_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.530e-63
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 1
Query:    1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 306
            IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVIS NDCGLPTKRRRVFIM
Sbjct:   60 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 161          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YZF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF8_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.980e-47
Identity = 87/101 (86.14%), Postives = 89/101 (88.12%), Query Frame = 1
Query:    1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFI 303
            IAEA RLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIIS LQVSAA+STVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVISGND       R V +
Sbjct:   89 IAEACRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISKLQVSAAISTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDVTKRIPHRHVVV 189          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YYY1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY1_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.410e-39
Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRG 318
            I EA RLGVEV  GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q  L  A+ LGF  SH+V++G+DCGLPT RRRVF++ TRG
Sbjct:   58 ITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 163          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835ZBG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.470e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 126
            IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV
Sbjct:  701 IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 742          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835YXD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.320e-17
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  193 EFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
            E+Q  L  A+ LGF  SH+VI G+DCGLPT RRRVF++FTRGR  G  LA +D ADW GVH RL
Sbjct: 2289 EWQHTLGAARTLGFSFSHHVIRGDDCGLPTMRRRVFLVFTRGRPAGSGLAEEDAADWAGVHARL 2352          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A835Z6Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.780e-16
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  193 EFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRGRLGGGKLARDDKADWRGVHERL 384
            E+Q  L  A+ LGF  SH+V+ G+DCGLPT  RRVF++FTRGR  G  LA +D ADW GVH RL
Sbjct: 2397 EWQHTLAAARALGFSFSHHVVRGDDCGLPTMWRRVFLVFTRGRPAGSGLAEEDAADWAGVHARL 2460          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: A0A6N7ZQ56_9HYPH (Cytosine-specific methyltransferase n=2 Tax=Roseibium sp. RKSG952 TaxID=2529384 RepID=A0A6N7ZQ56_9HYPH)

HSP 1 Score: 60.1 bits (144), Expect = 4.710e-8
Identity = 30/94 (31.91%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   28 EVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTV-RMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 306
            EV +GGPPC D+S +GKR   +G +  +++    A +  + ++ ++ENV   + +  ++QA DL +  G+  +  V+  + CG+P KR+R+F++
Sbjct:   67 EVIAGGPPCQDYSSAGKR--NEGGRASLTLEFADAVIYALPKVFIMENVEPAIRSETYRQANDLFRAAGYGLTQRVLDASLCGVPQKRKRLFVV 158          
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Match: UPI001BDD7A2F (DNA cytosine methyltransferase n=1 Tax=Canibacter sp. lx-72 TaxID=2837491 RepID=UPI001BDD7A2F)

HSP 1 Score: 52.4 bits (124), Expect = 2.370e-5
Identity = 27/94 (28.72%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   28 EVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVST-VRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 306
            ++  GG PC DFS +G +   KG + ++S+    A V+   +  ++ENV    +T  F   + L    G+  +  V+  + CG+P +R+R+F++
Sbjct:   78 DIIVGGAPCQDFSTAGHQDESKG-RAVLSVRFAEAVVAVRPKYFVMENVATIRNTESFAAVIKLLSRAGYGLTQRVLDASYCGVPQRRKRMFLI 170          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155203 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835ZBI0_9STRA7.550e-79100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YGJ9_9STRA6.170e-7797.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CA60_9STRA1.530e-6398.04S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZF8_9STRA3.980e-4786.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYY1_9STRA2.410e-3960.38S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZBG8_9STRA8.470e-18100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXD3_9STRA2.320e-1762.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6Y7_9STRA2.780e-1659.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6N7ZQ56_9HYPH4.710e-831.91Cytosine-specific methyltransferase n=2 Tax=Roseib... [more]
UPI001BDD7A2F2.370e-528.72DNA cytosine methyltransferase n=1 Tax=Canibacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_455contigContig_455:2718..3101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155203|gw1.455.3.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
Preferred namedcm
DescriptionPsort location Cytoplasmic, score
COG categoryH
Max annot lvl186801|Clostridia
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,1TS3G@1239|Firmicutes,249Q9@186801|Clostridia,3WH3U@541000|Ruminococcaceae
Evalue2.21e-08
Seed ortholog697329.Rumal_1386
Hectar predicted targeting categoryother localisation
TranscriptId155525
TrackFilteredModels1
ProteinId155203
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155203gene_18985Tribonema minus UTEX_B_3156 geneContig_455 2718..3101 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18985_1exon_18985_1Tribonema minus UTEX_B_3156 exonContig_455 2718..3101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18985CDS_18985Tribonema minus UTEX_B_3156 CDSContig_455 2718..3101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155203Trimin1|155203|gw1.455.3.1Tribonema minus UTEX_B_3156 polypeptideContig_455 2718..3101 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18985 ID=mRNA_18985|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_455:2718..3101+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATAGCGGAGGCACGCCGACTTGGGGTTGAAGTCTCCAGCGGTGGACCCCC
ATGCACTGACTTCAGCATGTCAGGCAAACGATGCTCTCAGAAGGGCATAC
AGTGCATCATCAGCATGCTGCAGGTCTCAGCGGCGGTCAGCACAGTGCGC
ATGGTGCTATTGGAGAACGTGGTGGGATTCCTGAGCACACCTGAGTTCCA
GCAGGCTCTAGACCTAGCTCAGGGCTTAGGGTTTGACCACAGCCACAACG
TCATCAGTGGCAACGACTGCGGCCTGCCTACAAAGCGGCGCCGTGTATTC
ATCATGTTCACGCGTGGCCGCCTGGGTGGCGGCAAGCTTGCGCGTGATGA
CAAAGCGGATTGGCGGGGGGTGCACGAGCGGCTG
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protein sequence of jgi.p|Trimin1|155203

>Trimin1|155203|gw1.455.3.1 ID=Trimin1|155203|gw1.455.3.1|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
IAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVR
MVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVF
IMFTRGRLGGGKLARDDKADWRGVHERL
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mRNA from alignment at Contig_455:2718..3101+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18985 ID=mRNA_18985|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_455:2718..3101+ (Tribonema minus UTEX_B_3156 )
ATAGCGGAGGCACGCCGACTTGGGGTTGAAGTCTCCAGCGGTGGACCCCC ATGCACTGACTTCAGCATGTCAGGCAAACGATGCTCTCAGAAGGGCATAC AGTGCATCATCAGCATGCTGCAGGTCTCAGCGGCGGTCAGCACAGTGCGC ATGGTGCTATTGGAGAACGTGGTGGGATTCCTGAGCACACCTGAGTTCCA GCAGGCTCTAGACCTAGCTCAGGGCTTAGGGTTTGACCACAGCCACAACG TCATCAGTGGCAACGACTGCGGCCTGCCTACAAAGCGGCGCCGTGTATTC ATCATGTTCACGCGTGGCCGCCTGGGTGGCGGCAAGCTTGCGCGTGATGA CAAAGCGGATTGGCGGGGGGTGCACGAGCGGCTG
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Coding sequence (CDS) from alignment at Contig_455:2718..3101+

>mRNA_18985 ID=mRNA_18985|Name=jgi.p|Trimin1|155203|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_455:2718..3101+ (Tribonema minus UTEX_B_3156 )
ATAGCGGAGGCACGCCGACTTGGGGTTGAAGTCTCCAGCGGTGGACCCCC
ATGCACTGACTTCAGCATGTCAGGCAAACGATGCTCTCAGAAGGGCATAC
AGTGCATCATCAGCATGCTGCAGGTCTCAGCGGCGGTCAGCACAGTGCGC
ATGGTGCTATTGGAGAACGTGGTGGGATTCCTGAGCACACCTGAGTTCCA
GCAGGCTCTAGACCTAGCTCAGGGCTTAGGGTTTGACCACAGCCACAACG
TCATCAGTGGCAACGACTGCGGCCTGCCTACAAAGCGGCGCCGTGTATTC
ATCATGTTCACGCGTGGCCGCCTGGGTGGCGGCAAGCTTGCGCGTGATGA
CAAAGCGGATTGGCGGGGGGTGCACGAGCGGCTG
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