mRNA_1895 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163521
Unique NamemRNA_1895
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163521 vs. uniprot
Match: A0A835Z1R7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R7_9STRA)

HSP 1 Score: 392 bits (1006), Expect = 6.590e-138
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:    1 MVAITAECTRALQEGDLPALERCISEGLPLDKDLIMQACKYGQLNVVKRLRGRGCPWDGNKVLLCATKVPNIDMAXXXXXXXXNWTDGLDGFESYVAAIRRGDREMFTWLHAEDCPVKDSLRGDLTFAAIETGDVEVVKWLSSVGYTPDASCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL 585
            MVAITAECTRALQEGDLPALERCISEGLPLDKDLIMQACKYGQLNVVKRLRGRGCPWDGNKVLLCATKVPNIDMAXXXXXXXXNWTDGLDGFESYVAAIRRGDREMFTWLHAEDCPVKDSLRGDLTFAAIETGDVEVVKWLSSVGYTPDASCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL
Sbjct:    1 MVAITAECTRALQEGDLPALERCISEGLPLDKDLIMQACKYGQLNVVKRLRGRGCPWDGNKVLLCATKVPNIDMAXXXXXXXXNWTDGLDGFESYVAAIRRGDREMFTWLHAEDCPVKDSLRGDLTFAAIETGDVEVVKWLSSVGYTPDASCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL 195
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BLAST of jgi.p|Trimin1|163521 vs. uniprot
Match: A0A835Z860_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z860_9STRA)

HSP 1 Score: 348 bits (893), Expect = 5.340e-119
Identity = 176/193 (91.19%), Postives = 179/193 (92.75%), Query Frame = 1 
Query:    7 AITAECTRALQEGDLPALERCISEGLPLDKDLIMQACKYGQLNVVKRLRGRGCPWDGNKVLLCATKVPNIDMAXXXXXXXXNWTDGLDGFESYVAAIRRGDREMFTWLHAEDCPVKDSLRGDLTFAAIETGDVEVVKWLSSVGYTPDASCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL 585
            +ITAECTRAL+EGDLP LERCISEGLPLDKDLIMQACKYGQLNVVK LRGRGCPWDGN+VLLCATKV      XXXXXXXX   DGLDGFESYVAAIRRGD EMFTWLHAEDCPVKDSLRGDLTFAAIE GDVEVVKWL SVGYTPDASCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL
Sbjct:  114 SITAECTRALREGDLPTLERCISEGLPLDKDLIMQACKYGQLNVVKWLRGRGCPWDGNQVLLCATKVXXXXXXXXXXXXXXXXNDGLDGFESYVAAIRRGDWEMFTWLHAEDCPVKDSLRGDLTFAAIEMGDVEVVKWLRSVGYTPDASCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL 306
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163521 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z1R7_9STRA6.590e-138100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z860_9STRA5.340e-11991.19Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:439204..439788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163521|e_gw1.26.84.1
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04121,ko04131
KEGG ModuleM00177
KEGG Pathwayko03010,ko04144,map03010,map04144
KEGG koko:K02942,ko:K11981
EC2.3.2.27
Preferred nameANKRD60
Descriptionspectrin binding
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG0297@1|root,KOG0297@2759|Eukaryota,KOG4177@2759|Eukaryota
Evalue2e-05
Seed ortholog2903.EOD06107
Hectar predicted targeting categoryother localisation
TranscriptId163843
TrackFilteredModels1
ProteinId163521
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163521gene_1895Tribonema minus UTEX_B_3156 geneContig_26 439204..439788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1895_1exon_1895_1Tribonema minus UTEX_B_3156 exonContig_26 439204..439788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1895CDS_1895Tribonema minus UTEX_B_3156 CDSContig_26 439204..439788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163521Trimin1|163521|e_gw1.26.84.1Tribonema minus UTEX_B_3156 polypeptideContig_26 439204..439788 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1895 ID=mRNA_1895|Name=jgi.p|Trimin1|163521|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_26:439204..439788+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGCGATCACGGCTGAATGCACAAGAGCTTTGCAGGAAGGTGACTT
GCCTGCACTAGAGCGCTGCATAAGCGAGGGTCTGCCGCTGGACAAAGACC
TCATCATGCAGGCCTGCAAATACGGCCAGCTGAACGTTGTCAAGCGGCTG
CGGGGACGCGGCTGCCCGTGGGACGGCAACAAAGTCCTGTTGTGCGCCAC
AAAGGTCCCGAACATTGACATGGCCAAGTGGGTGCGAGCCCAGGGGTGCA
ATTGGACTGACGGCCTAGATGGATTTGAGTCGTATGTTGCCGCCATCCGG
AGGGGGGACCGGGAGATGTTCACATGGCTACATGCTGAAGATTGCCCTGT
TAAGGATTCGCTGAGGGGTGATCTCACCTTTGCAGCCATTGAGACTGGTG
ACGTAGAAGTTGTCAAATGGCTGAGCAGTGTGGGTTACACACCTGACGCA
AGTTGCAGTGGGATAGCGGCGGAGCGCAATGACCTGCCCATGCTGAAGTA
CCTACACGAGAGTGGTGTACCTTGGGATGAATACACTGCGGTCACGGCGC
TCGAAGCTGGCAGCCACGAGTGCTTGGAGTACCTG
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protein sequence of jgi.p|Trimin1|163521

>Trimin1|163521|e_gw1.26.84.1 ID=Trimin1|163521|e_gw1.26.84.1|Name=jgi.p|Trimin1|163521|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=195bp
MVAITAECTRALQEGDLPALERCISEGLPLDKDLIMQACKYGQLNVVKRL
RGRGCPWDGNKVLLCATKVPNIDMAKWVRAQGCNWTDGLDGFESYVAAIR
RGDREMFTWLHAEDCPVKDSLRGDLTFAAIETGDVEVVKWLSSVGYTPDA
SCSGIAAERNDLPMLKYLHESGVPWDEYTAVTALEAGSHECLEYL
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mRNA from alignment at Contig_26:439204..439788+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1895 ID=mRNA_1895|Name=jgi.p|Trimin1|163521|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_26:439204..439788+ (Tribonema minus UTEX_B_3156 )
ATGGTAGCGATCACGGCTGAATGCACAAGAGCTTTGCAGGAAGGTGACTT
GCCTGCACTAGAGCGCTGCATAAGCGAGGGTCTGCCGCTGGACAAAGACC
TCATCATGCAGGCCTGCAAATACGGCCAGCTGAACGTTGTCAAGCGGCTG
CGGGGACGCGGCTGCCCGTGGGACGGCAACAAAGTCCTGTTGTGCGCCAC
AAAGGTCCCGAACATTGACATGGCCAAGTGGGTGCGAGCCCAGGGGTGCA
ATTGGACTGACGGCCTAGATGGATTTGAGTCGTATGTTGCCGCCATCCGG
AGGGGGGACCGGGAGATGTTCACATGGCTACATGCTGAAGATTGCCCTGT
TAAGGATTCGCTGAGGGGTGATCTCACCTTTGCAGCCATTGAGACTGGTG
ACGTAGAAGTTGTCAAATGGCTGAGCAGTGTGGGTTACACACCTGACGCA
AGTTGCAGTGGGATAGCGGCGGAGCGCAATGACCTGCCCATGCTGAAGTA
CCTACACGAGAGTGGTGTACCTTGGGATGAATACACTGCGGTCACGGCGC
TCGAAGCTGGCAGCCACGAGTGCTTGGAGTACCTG
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Coding sequence (CDS) from alignment at Contig_26:439204..439788+

>mRNA_1895 ID=mRNA_1895|Name=jgi.p|Trimin1|163521|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=585bp|location=Sequence derived from alignment at Contig_26:439204..439788+ (Tribonema minus UTEX_B_3156 )
ATGGTAGCGATCACGGCTGAATGCACAAGAGCTTTGCAGGAAGGTGACTT
GCCTGCACTAGAGCGCTGCATAAGCGAGGGTCTGCCGCTGGACAAAGACC
TCATCATGCAGGCCTGCAAATACGGCCAGCTGAACGTTGTCAAGCGGCTG
CGGGGACGCGGCTGCCCGTGGGACGGCAACAAAGTCCTGTTGTGCGCCAC
AAAGGTCCCGAACATTGACATGGCCAAGTGGGTGCGAGCCCAGGGGTGCA
ATTGGACTGACGGCCTAGATGGATTTGAGTCGTATGTTGCCGCCATCCGG
AGGGGGGACCGGGAGATGTTCACATGGCTACATGCTGAAGATTGCCCTGT
TAAGGATTCGCTGAGGGGTGATCTCACCTTTGCAGCCATTGAGACTGGTG
ACGTAGAAGTTGTCAAATGGCTGAGCAGTGTGGGTTACACACCTGACGCA
AGTTGCAGTGGGATAGCGGCGGAGCGCAATGACCTGCCCATGCTGAAGTA
CCTACACGAGAGTGGTGTACCTTGGGATGAATACACTGCGGTCACGGCGC
TCGAAGCTGGCAGCCACGAGTGCTTGGAGTACCTG
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