mRNA_1893 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163563
Unique NamemRNA_1893
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163563 vs. uniprot
Match: A0A835Z2W4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W4_9STRA)

HSP 1 Score: 592 bits (1527), Expect = 6.620e-211
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1 
Query:    1 MALVSKQFLEVAEEIGEVHTKSADIEGRLALLEWAQYNGLPRRMKLRVAANGGHLQLLRKMSPFSDWEASIVGKGAAEGGHLNVLDWIGRRGWDRVCEAAAGKCKWHVVQWALGNGLKPDSSVVVAAAQAGETSLMARALSGHTYWQRMDEAYAASRAIAAGRLDALQWALDHADIIPPKPAYVAWDFCPAAENGHINILQWAKDTHRRAPSTMQKWALAAATGGQVRVISWLAKANMIDIPDFVSVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLESGYGVRSGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCKHKCAGWDRNLAAMANMYTRQIVKKWLVLNNTRARRTARGARK 1161
            MALVSKQFLEVAEEIGEVHTKSADIEGRLALLEWAQYNGLPRRMKLRVAANGGHLQLLRKMSPFSDWEASIVGKGAAEGGHLNVLDWIGRRGWDRVCEAAAGKCKWHVVQWALGNGLKPDSSVVVAAAQAGETSLMARALSGHTYWQRMDEAYAASRAIAAGRLDALQWALDHADIIPPKPAYVAWDFCPAAENGHINILQWAKDTHRRAPSTMQKWALAAATGGQVRVISWLAKANMIDIPDFVSVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLESGYGVRSGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCKHKCAGWDRNLAAMANMYTRQIVKKWLVLNNTRARRTARGARK
Sbjct:    1 MALVSKQFLEVAEEIGEVHTKSADIEGRLALLEWAQYNGLPRRMKLRVAANGGHLQLLRKMSPFSDWEASIVGKGAAEGGHLNVLDWIGRRGWDRVCEAAAGKCKWHVVQWALGNGLKPDSSVVVAAAQAGETSLMARALSGHTYWQRMDEAYAASRAIAAGRLDALQWALDHADIIPPKPAYVAWDFCPAAENGHINILQWAKDTHRRAPSTMQKWALAAATGGQVRVISWLAKANMIDIPDFVSVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLESGYGVRSGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCKHKCAGWDRNLAAMANMYTRQIVKKWLVLNNTRARRTARGARK 387
[Close]
BLAST of jgi.p|Trimin1|163563 vs. uniprot
Match: A0A835ZCQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ3_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.020e-55
Identity = 149/430 (34.65%), Postives = 193/430 (44.88%), Query Frame = 1 
Query:    1 MALVSKQFLEVAEEIGEVHTKSADIEGRLALLEWAQYNGLPRRMKLRVAANGGHLQLLRKM-SPFSDWEASIVGKGAAEGGHLNVLDWIGRRGWDRVCEAAAGKCKWHVVQWALGNGLKPDSSVVVAAAQAGETSLMARALSGHTYWQRMDEAYAA--------------------------------------SRAIAAGRLDALQWALDHA----DIIPPKPAYVAWDFCPAAENGHINILQWAKDTHRRAPSTMQKWALAAATGGQVRVISWLAKANMIDIPDFVSVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLESGYGVRSGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCKHKCAGWDRNLAAMANMYTRQIVKKWLVLNNTRARRTARGARK 1161
            +ALVSKQFLE AEE  EV T   DIEG L+LL WAQ +G P +M  RVAA GGHLQLLRK+  P     AS VG  AA GGH+++L+WIGRRGWD VC AAA +  W +V+WAL + ++PD+SV++AAA+AG+ +L++RALS  T    M EAY+                                         AIAAGRLDA++WA+ +A    D+IP   + ++W+F  AAEN   ++            +    +       G V      +  N I IP  V+  A                                               R+ VL                                         L   KC GWD NL AMAN YTR  V+KWLV NN+R RRTA+  R+
Sbjct:   45 VALVSKQFLERAEENREVMTTCRDIEGPLSLLRWAQDSGCPPQMLARVAAYGGHLQLLRKLFPPTCHMCASSVGAAAARGGHVHILEWIGRRGWDGVCAAAAAEGNWDIVEWALDHDVEPDASVIMAAARAGKVNLISRALSKSTCRLLMTEAYSVCIRRRDLDTFRALTRHDAAVAILRSRQTRTAICLNSFVKMAIAAGRLDAIKWAMANAVATPDLIPSNSSDISWEFVLAAENRGTDVSALTFSDIDDRMNFFMSYVDETLDIGFVE----FSINNSIHIPQAVAYNAAKEG-------------------------------------------RTDVLMWLHETGEKMLRLAIDTNKINIIKW----------------LHARKCPGWDGNLPAMANAYTRDAVRKWLVRNNSRGRRTAKAVRR 411
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163563 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z2W4_9STRA6.620e-211100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCQ3_9STRA4.020e-5534.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:429034..430571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163563|e_gw1.26.124.1
BRITEko00000,ko00001,ko04090
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
KEGG koko:K06052
Max annot lvl33154|Opisthokonta
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota,3AJX8@33154|Opisthokonta
Evalue3.02e-05
Seed ortholog192875.XP_004342946.1
Hectar predicted targeting categoryother localisation
TranscriptId163885
TrackFilteredModels1
ProteinId163563
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163563gene_1893Tribonema minus UTEX_B_3156 geneContig_26 429034..430571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1893_1exon_1893_1Tribonema minus UTEX_B_3156 exonContig_26 429034..429501 +
exon_1893_2exon_1893_2Tribonema minus UTEX_B_3156 exonContig_26 429669..429896 +
exon_1893_3exon_1893_3Tribonema minus UTEX_B_3156 exonContig_26 430104..430571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1893CDS_1893Tribonema minus UTEX_B_3156 CDSContig_26 429034..429501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163563Trimin1|163563|e_gw1.26.124.1Tribonema minus UTEX_B_3156 polypeptideContig_26 429034..430571 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1893 ID=mRNA_1893|Name=jgi.p|Trimin1|163563|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1164bp|location=Sequence derived from alignment at Contig_26:429034..430571+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCGTGTCCAAGCAGTTCCTGGAGGTGGCTGAGGAGATTGGAGA
GGTACACACTAAATCGGCAGACATCGAAGGCAGACTTGCTTTGTTGGAGT
GGGCGCAGTACAACGGCCTCCCACGCCGGATGAAACTACGCGTGGCTGCT
AACGGCGGACACCTGCAGCTGCTGCGTAAGATGTCGCCCTTCAGCGATTG
GGAAGCATCGATCGTCGGCAAAGGAGCAGCCGAGGGAGGGCATCTTAATG
TGCTCGACTGGATCGGGCGCAGGGGATGGGACAGGGTCTGCGAAGCAGCA
GCAGGCAAGTGTAAATGGCACGTCGTGCAGTGGGCTCTCGGCAACGGACT
GAAGCCGGACTCCAGCGTCGTCGTAGCAGCTGCGCAGGCAGGAGAGACGA
GCCTCATGGCACGTGCGCTGTCCGGGCACACCTACTGGCAGCGCATGGAT
GAGGCATACGCAGCCAGCCGGGCGATCGCTGCTGGACGCCTCGATGCTCT
TCAGTGGGCTCTGGACCACGCAGACATCATCCCCCCCAAGCCCGCATACG
TAGCCTGGGACTTTTGTCCGGCTGCCGAGAACGGCCACATCAACATCCTT
CAGTGGGCTAAGGACACACACCGCCGGGCTCCATCAACCATGCAGAAGTG
GGCGCTTGCTGCCGCCACAGGAGGGCAGGTGCGTGTCATATCGTGGCTCG
CCAAGGCAAACATGATCGACATACCAGACTTTGTGTCTGTTAGGGCGGCG
CAGCAGGGGAGGGTGGATGTGTTGAGGTGGTTGCACGACTCCGGCAGCAT
GTTCATTGCCGACGACATCTTTGAGATAGCAGCAAAAGCAGGACAGCTAG
AGGTTGTGGCGTGGGGTCTCGAGAGTGGCTATGGGGTTCGCTCAGGGGTG
CTCGAGGCCGCCGCTGCCGAGGGGCACTTTGACATACTCAAGTGGGCACA
CGTGACCGGCGTGCCATTCACGGAGGGGGTGCTGCGCGGTGCGATCGACT
GTGGCAAGCTCAACATCATCAAGTGGCTGTGCAAGCACAAGTGTGCGGGG
TGGGACAGGAACCTGGCAGCCATGGCGAACATGTATACACGCCAGATCGT
CAAGAAATGGCTTGTCCTCAACAACACACGTGCACGCCGCACTGCTAGGG
GGGCACGCAAGTGA
back to top

protein sequence of jgi.p|Trimin1|163563

>Trimin1|163563|e_gw1.26.124.1 ID=Trimin1|163563|e_gw1.26.124.1|Name=jgi.p|Trimin1|163563|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=388bp
MALVSKQFLEVAEEIGEVHTKSADIEGRLALLEWAQYNGLPRRMKLRVAA
NGGHLQLLRKMSPFSDWEASIVGKGAAEGGHLNVLDWIGRRGWDRVCEAA
AGKCKWHVVQWALGNGLKPDSSVVVAAAQAGETSLMARALSGHTYWQRMD
EAYAASRAIAAGRLDALQWALDHADIIPPKPAYVAWDFCPAAENGHINIL
QWAKDTHRRAPSTMQKWALAAATGGQVRVISWLAKANMIDIPDFVSVRAA
QQGRVDVLRWLHDSGSMFIADDIFEIAAKAGQLEVVAWGLESGYGVRSGV
LEAAAAEGHFDILKWAHVTGVPFTEGVLRGAIDCGKLNIIKWLCKHKCAG
WDRNLAAMANMYTRQIVKKWLVLNNTRARRTARGARK*
back to top

mRNA from alignment at Contig_26:429034..430571+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1893 ID=mRNA_1893|Name=jgi.p|Trimin1|163563|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1538bp|location=Sequence derived from alignment at Contig_26:429034..430571+ (Tribonema minus UTEX_B_3156 )
ATGGCTCTCGTGTCCAAGCAGTTCCTGGAGGTGGCTGAGGAGATTGGAGA
GGTACACACTAAATCGGCAGACATCGAAGGCAGACTTGCTTTGTTGGAGT
GGGCGCAGTACAACGGCCTCCCACGCCGGATGAAACTACGCGTGGCTGCT
AACGGCGGACACCTGCAGCTGCTGCGTAAGATGTCGCCCTTCAGCGATTG
GGAAGCATCGATCGTCGGCAAAGGAGCAGCCGAGGGAGGGCATCTTAATG
TGCTCGACTGGATCGGGCGCAGGGGATGGGACAGGGTCTGCGAAGCAGCA
GCAGGCAAGTGTAAATGGCACGTCGTGCAGTGGGCTCTCGGCAACGGACT
GAAGCCGGACTCCAGCGTCGTCGTAGCAGCTGCGCAGGCAGGAGAGACGA
GCCTCATGGCACGTGCGCTGTCCGGGCACACCTACTGGCAGCGCATGGAT
GAGGCATACGCAGCCAGCGTTGGCCGTGGCGACCTGTCCACGTTCAGAGT
GCTTGCTCGCCACGACACACACATCGACATAGCTGTGCTCATGCGTGCAC
CTTTGGCCTTATTCAGTCGGCTGCTACAATCCTAACACGCAAGCGTGGCT
TTTACATGCGCACTAGTGTGGATGGTTTTGTAGAGCGGGCGATCGCTGCT
GGACGCCTCGATGCTCTTCAGTGGGCTCTGGACCACGCAGACATCATCCC
CCCCAAGCCCGCATACGTAGCCTGGGACTTTTGTCCGGCTGCCGAGAACG
GCCACATCAACATCCTTCAGTGGGCTAAGGACACACACCGCCGGGCTCCA
TCAACCATGCAGAAGTGGGCGCTTGCTGCCGCCACAGGAGGGCAGGTGCG
TGTCATATCGTGGGTAGCGTCTCAGCCGCACACTACTCTGGAGTGGAACG
CGATGGCAAAGGCAGCATGGGTTGCTGCCGACCCTGAGATCGTGAAGCTT
GCTCAGAGCCGAGGTGCAGACATAAGCACGTTCAGCCTTTACGATGTGGG
GAGTGAAGACTGGATAACATTCGACGGTCACCCCCGACTCGACAAGATTC
TCAATTTGGAGCTCCTGCAGCTCGCCAAGGCAAACATGATCGACATACCA
GACTTTGTGTCTGTTAGGGCGGCGCAGCAGGGGAGGGTGGATGTGTTGAG
GTGGTTGCACGACTCCGGCAGCATGTTCATTGCCGACGACATCTTTGAGA
TAGCAGCAAAAGCAGGACAGCTAGAGGTTGTGGCGTGGGGTCTCGAGAGT
GGCTATGGGGTTCGCTCAGGGGTGCTCGAGGCCGCCGCTGCCGAGGGGCA
CTTTGACATACTCAAGTGGGCACACGTGACCGGCGTGCCATTCACGGAGG
GGGTGCTGCGCGGTGCGATCGACTGTGGCAAGCTCAACATCATCAAGTGG
CTGTGCAAGCACAAGTGTGCGGGGTGGGACAGGAACCTGGCAGCCATGGC
GAACATGTATACACGCCAGATCGTCAAGAAATGGCTTGTCCTCAACAACA
CACGTGCACGCCGCACTGCTAGGGGGGCACGCAAGTGA
back to top

Coding sequence (CDS) from alignment at Contig_26:429034..430571+

>mRNA_1893 ID=mRNA_1893|Name=jgi.p|Trimin1|163563|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1164bp|location=Sequence derived from alignment at Contig_26:429034..430571+ (Tribonema minus UTEX_B_3156 )
ATGGCTCTCGTGTCCAAGCAGTTCCTGGAGGTGGCTGAGGAGATTGGAGA
GGTACACACTAAATCGGCAGACATCGAAGGCAGACTTGCTTTGTTGGAGT
GGGCGCAGTACAACGGCCTCCCACGCCGGATGAAACTACGCGTGGCTGCT
AACGGCGGACACCTGCAGCTGCTGCGTAAGATGTCGCCCTTCAGCGATTG
GGAAGCATCGATCGTCGGCAAAGGAGCAGCCGAGGGAGGGCATCTTAATG
TGCTCGACTGGATCGGGCGCAGGGGATGGGACAGGGTCTGCGAAGCAGCA
GCAGGCAAGTGTAAATGGCACGTCGTGCAGTGGGCTCTCGGCAACGGACT
GAAGCCGGACTCCAGCGTCGTCGTAGCAGCTGCGCAGGCAGGAGAGACGA
GCCTCATGGCACGTGCGCTGTCCGGGCACACCTACTGGCAGCGCATGGAT
GAGGCATACGCAGCCAGCCGGGCGATCGCTGCTGGACGCCTCGATGCTCT
TCAGTGGGCTCTGGACCACGCAGACATCATCCCCCCCAAGCCCGCATACG
TAGCCTGGGACTTTTGTCCGGCTGCCGAGAACGGCCACATCAACATCCTT
CAGTGGGCTAAGGACACACACCGCCGGGCTCCATCAACCATGCAGAAGTG
GGCGCTTGCTGCCGCCACAGGAGGGCAGGTGCGTGTCATATCGTGGCTCG
CCAAGGCAAACATGATCGACATACCAGACTTTGTGTCTGTTAGGGCGGCG
CAGCAGGGGAGGGTGGATGTGTTGAGGTGGTTGCACGACTCCGGCAGCAT
GTTCATTGCCGACGACATCTTTGAGATAGCAGCAAAAGCAGGACAGCTAG
AGGTTGTGGCGTGGGGTCTCGAGAGTGGCTATGGGGTTCGCTCAGGGGTG
CTCGAGGCCGCCGCTGCCGAGGGGCACTTTGACATACTCAAGTGGGCACA
CGTGACCGGCGTGCCATTCACGGAGGGGGTGCTGCGCGGTGCGATCGACT
GTGGCAAGCTCAACATCATCAAGTGGCTGTGCAAGCACAAGTGTGCGGGG
TGGGACAGGAACCTGGCAGCCATGGCGAACATGTATACACGCCAGATCGT
CAAGAAATGGCTTGTCCTCAACAACACACGTGCACGCCGCACTGCTAGGG
GGGCACGCAAGTGA
back to top