mRNA_18923 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145643
Unique NamemRNA_18923
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A835YXM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM9_9STRA)

HSP 1 Score: 338 bits (868), Expect = 1.010e-117
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALRECVAYLDTVGDVACLDDVANL 507
            IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALRECVAYLDTVGDVACLDDVANL
Sbjct:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALRECVAYLDTVGDVACLDDVANL 169          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A150G7X1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7X1_GONPE)

HSP 1 Score: 91.7 bits (226), Expect = 1.270e-19
Identity = 67/179 (37.43%), Postives = 90/179 (50.28%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVP--ADPRDAARALRECVAYLDTVGDVACL--------DDVANL 507
            + G+N EVL  + +  G +  GA+L +E+KK+LT   + QAE EF++WQ  S YPF Q ITDL TGG A ++  +       +GK  +  R F  M   + F+A L+SALPAD  A  +SR+   L      +  VP    PR    A  E V  L        L        DDVANL
Sbjct:   53 VSGKNDEVLGVKSF--GTDETGAVLGVELKKKLTWQGLRQAETEFYLWQGSSQYPFCQVITDLQTGGAAYYSDGADE-----KGKVRVVRRVFVGMEKLYLFMAQLVSALPADIDAPLRSRADPGLPAGFPDELPVPRRVKPRLEPTAAPELVGGLPHYAVAFKLLAEMRADEDDVANL 224          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CMP2_9STRA (Uncharacterized protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.100e-19
Identity = 69/183 (37.70%), Postives = 91/183 (49.73%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDT--------LDTPLRHKHMVPADPRDA-ARALRECVAYLD------TVGDVACLDDVAN 504
            +  RN E+LI R +  G  ++GAIL +E+KKRLT   I QAE EF +WQ  S+YPF Q +TDLNTGG+A +    P      R    +      +M   WRF+ GL+  L  D AAL      D         L+ P R K  +   P  A AR  RE + +           DVACL D+A+
Sbjct:  270 VSTRNDELLIVRDFY-GTPQNGAILGVELKKRLTWQGIRQAETEFILWQAESNYPFCQMVTDLNTGGVAFFAL--PGDGSGLR----IMYMVLPSMAEVWRFMGGLVRGL--DVAALTTVLRVDAPGSSLPQQLEEPRRVKPRLDGQPAAADARLTREQLLWKQISIMRANENDVACLQDLAD 443          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A835WAF4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WAF4_CHLIN)

HSP 1 Score: 91.3 bits (225), Expect = 1.570e-18
Identity = 63/178 (35.39%), Postives = 95/178 (53.37%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPA---DPRDAARALREC-----VAYLDTVGDVA-CLDDVANL 507
            I+G+N EVL    +  GQ   GA+L +E+KK+L+   + QAE EF++WQ+ S YPF Q ITD+ TG  A + +         +G+ +L  R F +MG  + F+AGLI+ LP+D     +SR+   L      +  VP     P+ A RA  +       + L  + D+    DD+ANL
Sbjct:  225 IKGKNDEVLGVTSF--GQAATGAVLGVELKKKLSQQGVRQAETEFYLWQSSSQYPFCQVITDMKTG-CAYYFE-----GINSKGRLVLRVRVFGSMGPLYDFMAGLINGLPSDLNDQLRSRAPSGLPVSFPQELSVPQRIKPPQHAPRAELDAGVPPFASALKLISDMRDAEDDIANL 394          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CLL8_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.310e-17
Identity = 63/181 (34.81%), Postives = 86/181 (47.51%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDT--------LDTPLRHKHMVPADPRDAARALRECVAYLDTVG-------DVACLDDV 498
            +  RN E+LI R +  G  ++GAIL +E+KKRLT   + QAE EF VWQ  S+YPF Q +TDLN GG+A +            G  +++T    +M   W F+ GL+  L  D AAL      D         L+ P R K  +   P  A   L     +   +        DVACL D+
Sbjct:   57 VSSRNDELLIVRNFY-GTPQNGAILGVELKKRLTWQGLRQAETEFIVWQAESNYPFCQMVTDLNAGGVAFFALPGDGS-----GLRIMYT-VLPSMKDVWGFMEGLVRGL--DVAALTSVLRVDAPGSSLPQQLEQPRRVKPRLDGRPSAADAMLTREQLFWKQISTERANEDDVACLQDL 228          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CCX2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.030e-16
Identity = 65/181 (35.91%), Postives = 86/181 (47.51%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDT--------LDTPLRHKHMVPADPRDAARALRECVAYLDTVG-------DVACLDDV 498
            +  RN ++LI + Y  G  ++GAIL +E+KKRLT   + QAE EF VWQ  S+YPF Q ITDLNTGG+A +    P      R    +  +   +M   WRF+ GL+  L  D AAL      D         L+ P R K  +      A   L     +   +        DVACL DV
Sbjct:  175 VSSRNDQLLIVKDY-HGTPQNGAILGVELKKRLTWQGLRQAETEFIVWQAESNYPFCQMITDLNTGGVAFYAL--PGDGSGLR----IMYKVLPSMTEVWRFMGGLVCGL--DVAALTAVLRMDAPGSSMPQQLEEPRRVKPKLDGQRTAADATLTREQFFWKQMSIIRADEDDVACLRDV 346          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A8J4C380_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C380_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 3.330e-16
Identity = 59/179 (32.96%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTL--------DTPLRHKHMVPADPR-DAARALRECVAYLDTVGDVA-CLDDVANL 507
            I+G+N EVL    +  G++  GA+L +E+KK+L+   + QAE EF++WQ+ S YPF Q ITD+  G        +P       G  +L  R F +M   + F+A LI+ LP+D     + R+  +L          PLR K    A P  + + +L   +A L  + ++    DD+ANL
Sbjct:   43 IKGKNNEVLGVTNF--GRDALGAVLGVELKKKLSWQGVRQAETEFYLWQSSSQYPFCQVITDMKIGAAYFVEGVNPE------GYLVLCVRVFGSMEPLYNFMAELINGLPSDLNDRLRPRTPSSLPVSFPKELSAPLRIKPPRHAPPHVERSTSLPPFIAALKLISEMREAEDDIANL 213          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A2J7ZKQ1_9CHLO (Uncharacterized protein n=2 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZKQ1_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 3.630e-14
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPAD 339
            ++G+N EVL    Y  G    GA+L IE+KK+L+   + QAE EF++WQ+ S YPF Q ITD+  GG A +++          G  ++  R F+NM   + F+A LI  LP D
Sbjct:   45 VKGKNDEVLCVASYGAGPL--GAVLGIELKKKLSWQGMRQAETEFYLWQSSSQYPFCQVITDMRIGG-AYYSE-----GINDTGNMVVRYRVFNNMEQLYEFMAKLIYGLPKD 149          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A150G9U0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G9U0_GONPE)

HSP 1 Score: 78.6 bits (192), Expect = 3.940e-14
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAA 348
            + G+N  VL  + +  G E  GA+L + +KK+LT   + QAEA+F++WQ  S YPF Q ITDL TGG+A ++           G   +  R F +M     F+A L++ALPAD  A
Sbjct:  191 VSGKNDVVLGVKSF--GTEELGAVLGVVLKKKLTRQGLRQAEAQFYLWQCSSQYPFCQVITDLQTGGVAYYSD-----GFDQEGYLRVVFRVFVDMEKLHLFMAQLVNALPADIEA 299          
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CEK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.010e-14
Identity = 38/46 (82.61%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFH 138
            IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAH      A  H
Sbjct:  265 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHVRAAEHAPEH 310          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835YXM9_9STRA1.010e-117100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A150G7X1_GONPE1.270e-1937.43Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A836CMP2_9STRA3.100e-1937.70Uncharacterized protein n=5 Tax=Tribonema minus Ta... [more]
A0A835WAF4_CHLIN1.570e-1835.39Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A836CLL8_9STRA2.310e-1734.81Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A836CCX2_9STRA1.030e-1635.91Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A8J4C380_9CHLO3.330e-1632.96Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A2J7ZKQ1_9CHLO3.630e-1439.82Uncharacterized protein n=2 Tax=Tetrabaena sociali... [more]
A0A150G9U0_GONPE3.940e-1439.66Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A836CEK6_9STRA6.010e-1482.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_295contigContig_295:34899..36021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145643|gw1.295.4.1
Hectar predicted targeting categoryother localisation
TranscriptId145965
TrackFilteredModels1
ProteinId145643
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145643gene_18923Tribonema minus UTEX_B_3156 geneContig_295 34899..36021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145643Trimin1|145643|gw1.295.4.1Tribonema minus UTEX_B_3156 polypeptideContig_295 34899..36021 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18923_2exon_18923_2Tribonema minus UTEX_B_3156 exonContig_295 34899..35297 -
exon_18923_1exon_18923_1Tribonema minus UTEX_B_3156 exonContig_295 35914..36021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18923CDS_18923Tribonema minus UTEX_B_3156 CDSContig_295 35914..36021 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18923 ID=mRNA_18923|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=507bp|location=Sequence derived from alignment at Contig_295:34899..36021- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATAGAAGGCAGAAACGGCGAAGTGCTGATTGACCGCCGGTATTGCGACGG
ACAAGAGCGTCATGGTGCCATTCTCGCGATCGAGGTCAAGAAGCGGCTGA
CTGCGCATGCCATCCTTCAGGCGGAGGCAGAGTTCCATGTGTGGCAGACA
CACTCATCCTACCCCTTCTACCAGACGATAACCGACCTCAATACCGGCGG
CCTGGCCCTGTGGACGCAGCACAGCCCTAACCCTAACCCTAACCCAAGAG
GGAAACCGCTGCTCCACACTCGCACGTTTGACAATATGGGCGCCTTCTGG
CGGTTTGTCGCAGGCCTCATTAGCGCTCTGCCTGCTGACACTGCCGCTTT
GGACCAGAGTAGGAGCACTGACACGCTTGACACCCCTCTGCGTCACAAGC
ACATGGTGCCTGCTGACCCTCGGGACGCCGCTCGGGCTTTGCGAGAGTGC
GTGGCCTATCTTGATACTGTAGGAGATGTTGCGTGCCTGGATGATGTTGC
CAACCTC
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protein sequence of jgi.p|Trimin1|145643

>Trimin1|145643|gw1.295.4.1 ID=Trimin1|145643|gw1.295.4.1|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQT
HSSYPFYQTITDLNTGGLALWTQHSPNPNPNPRGKPLLHTRTFDNMGAFW
RFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALREC
VAYLDTVGDVACLDDVANL
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mRNA from alignment at Contig_295:34899..36021-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18923 ID=mRNA_18923|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_295:34899..36021- (Tribonema minus UTEX_B_3156 )
ATAGAAGGCAGAAACGGCGAAGTGCTGATTGACCGCCGGTATTGCGACGG ACAAGAGCGTCATGGTGCCATTCTCGCGATCGAGGTCAAGAAGCGGCTGA CTGCGCATGTTCGTGCTGCTGAACATGCACCTGAGCATAACAGACTTGCA TGAGCACTTCAGTATGCGGGCCTGGCTTGCAGTCTGGTATTCATGGATTT GTATTTGTGAAGGCCCCAAGGGAGGGCGCGTAGCCCATGTGTTTGTAGAA TGTAAATGTATGCAGCAACCTTACAGTACTGTTGGTCGGAAGGTGTAGCA AGTTGCCACGATATTGTACACGATGTTGCCATGCGACGTTTACGCTTTTC AAGGTGTAGACTGTATGTAGGCTCTGATGTCAGAATATTGAAGTGTCTTG TATTGAGTACGTGTGTTGCCTCACAAGTCCATTTGTGGTGGCATGCATTG TGAAAACCTTCAAAAGCGCAGGTGCTGGTTACGTGTCGGAAGGCAAGCCC ACAAGCCTTGCCAGTGCCTGAATGCGTTTCTGCGGTGTCGAGAAAGCCCA GGTGACGTCATTTGACTGATGCTAACTGGTGCCTGCAACGTTCTTTACTC GAGTTATTTGATCACACATGTGCTGTTCAGTACATCATTACAGCTTTCAC AACAGGCTGTTGTTGAGCGCGCTGTGAATCACATGCAGCACGACTGAATG CTGTCACCACTCTCGCTGTTGCAGGCCATCCTTCAGGCGGAGGCAGAGTT CCATGTGTGGCAGACACACTCATCCTACCCCTTCTACCAGACGATAACCG ACCTCAATACCGGCGGCCTGGCCCTGTGGACGCAGCACAGCCCTAACCCT AACCCTAACCCAAGAGGGAAACCGCTGCTCCACACTCGCACGTTTGACAA TATGGGCGCCTTCTGGCGGTTTGTCGCAGGCCTCATTAGCGCTCTGCCTG CTGACACTGCCGCTTTGGACCAGAGTAGGAGCACTGACACGCTTGACACC CCTCTGCGTCACAAGCACATGGTGCCTGCTGACCCTCGGGACGCCGCTCG GGCTTTGCGAGAGTGCGTGGCCTATCTTGATACTGTAGGAGATGTTGCGT GCCTGGATGATGTTGCCAACCTC
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Coding sequence (CDS) from alignment at Contig_295:34899..36021-

>mRNA_18923 ID=mRNA_18923|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=507bp|location=Sequence derived from alignment at Contig_295:34899..36021- (Tribonema minus UTEX_B_3156 )
ATAGAAGGCAGAAACGGCGAAGTGCTGATTGACCGCCGGTATTGCGACGG
ACAAGAGCGTCATGGTGCCATTCTCGCGATCGAGGTCAAGAAGCGGCTGA
CTGCGCATGCCATCCTTCAGGCGGAGGCAGAGTTCCATGTGTGGCAGACA
CACTCATCCTACCCCTTCTACCAGACGATAACCGACCTCAATACCGGCGG
CCTGGCCCTGTGGACGCAGCACAGCCCTAACCCTAACCCTAACCCAAGAG
GGAAACCGCTGCTCCACACTCGCACGTTTGACAATATGGGCGCCTTCTGG
CGGTTTGTCGCAGGCCTCATTAGCGCTCTGCCTGCTGACACTGCCGCTTT
GGACCAGAGTAGGAGCACTGACACGCTTGACACCCCTCTGCGTCACAAGC
ACATGGTGCCTGCTGACCCTCGGGACGCCGCTCGGGCTTTGCGAGAGTGC
GTGGCCTATCTTGATACTGTAGGAGATGTTGCGTGCCTGGATGATGTTGC
CAACCTC
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