mRNA_18923 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A835YXM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM9_9STRA) HSP 1 Score: 338 bits (868), Expect = 1.010e-117 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALRECVAYLDTVGDVACLDDVANL 507
IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALRECVAYLDTVGDVACLDDVANL
Sbjct: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPADPRDAARALRECVAYLDTVGDVACLDDVANL 169
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A150G7X1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7X1_GONPE) HSP 1 Score: 91.7 bits (226), Expect = 1.270e-19 Identity = 67/179 (37.43%), Postives = 90/179 (50.28%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVP--ADPRDAARALRECVAYLDTVGDVACL--------DDVANL 507
+ G+N EVL + + G + GA+L +E+KK+LT + QAE EF++WQ S YPF Q ITDL TGG A ++ + +GK + R F M + F+A L+SALPAD A +SR+ L + VP PR A E V L L DDVANL
Sbjct: 53 VSGKNDEVLGVKSF--GTDETGAVLGVELKKKLTWQGLRQAETEFYLWQGSSQYPFCQVITDLQTGGAAYYSDGADE-----KGKVRVVRRVFVGMEKLYLFMAQLVSALPADIDAPLRSRADPGLPAGFPDELPVPRRVKPRLEPTAAPELVGGLPHYAVAFKLLAEMRADEDDVANL 224
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CMP2_9STRA (Uncharacterized protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP2_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.100e-19 Identity = 69/183 (37.70%), Postives = 91/183 (49.73%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDT--------LDTPLRHKHMVPADPRDA-ARALRECVAYLD------TVGDVACLDDVAN 504
+ RN E+LI R + G ++GAIL +E+KKRLT I QAE EF +WQ S+YPF Q +TDLNTGG+A + P R + +M WRF+ GL+ L D AAL D L+ P R K + P A AR RE + + DVACL D+A+
Sbjct: 270 VSTRNDELLIVRDFY-GTPQNGAILGVELKKRLTWQGIRQAETEFILWQAESNYPFCQMVTDLNTGGVAFFAL--PGDGSGLR----IMYMVLPSMAEVWRFMGGLVRGL--DVAALTTVLRVDAPGSSLPQQLEEPRRVKPRLDGQPAAADARLTREQLLWKQISIMRANENDVACLQDLAD 443
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A835WAF4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WAF4_CHLIN) HSP 1 Score: 91.3 bits (225), Expect = 1.570e-18 Identity = 63/178 (35.39%), Postives = 95/178 (53.37%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTLDTPLRHKHMVPA---DPRDAARALREC-----VAYLDTVGDVA-CLDDVANL 507
I+G+N EVL + GQ GA+L +E+KK+L+ + QAE EF++WQ+ S YPF Q ITD+ TG A + + +G+ +L R F +MG + F+AGLI+ LP+D +SR+ L + VP P+ A RA + + L + D+ DD+ANL
Sbjct: 225 IKGKNDEVLGVTSF--GQAATGAVLGVELKKKLSQQGVRQAETEFYLWQSSSQYPFCQVITDMKTG-CAYYFE-----GINSKGRLVLRVRVFGSMGPLYDFMAGLINGLPSDLNDQLRSRAPSGLPVSFPQELSVPQRIKPPQHAPRAELDAGVPPFASALKLISDMRDAEDDIANL 394
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CLL8_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL8_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.310e-17 Identity = 63/181 (34.81%), Postives = 86/181 (47.51%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDT--------LDTPLRHKHMVPADPRDAARALRECVAYLDTVG-------DVACLDDV 498
+ RN E+LI R + G ++GAIL +E+KKRLT + QAE EF VWQ S+YPF Q +TDLN GG+A + G +++T +M W F+ GL+ L D AAL D L+ P R K + P A L + + DVACL D+
Sbjct: 57 VSSRNDELLIVRNFY-GTPQNGAILGVELKKRLTWQGLRQAETEFIVWQAESNYPFCQMVTDLNAGGVAFFALPGDGS-----GLRIMYT-VLPSMKDVWGFMEGLVRGL--DVAALTSVLRVDAPGSSLPQQLEQPRRVKPRLDGRPSAADAMLTREQLFWKQISTERANEDDVACLQDL 228
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CCX2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX2_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.030e-16 Identity = 65/181 (35.91%), Postives = 86/181 (47.51%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDT--------LDTPLRHKHMVPADPRDAARALRECVAYLDTVG-------DVACLDDV 498
+ RN ++LI + Y G ++GAIL +E+KKRLT + QAE EF VWQ S+YPF Q ITDLNTGG+A + P R + + +M WRF+ GL+ L D AAL D L+ P R K + A L + + DVACL DV
Sbjct: 175 VSSRNDQLLIVKDY-HGTPQNGAILGVELKKRLTWQGLRQAETEFIVWQAESNYPFCQMITDLNTGGVAFYAL--PGDGSGLR----IMYKVLPSMTEVWRFMGGLVCGL--DVAALTAVLRMDAPGSSMPQQLEEPRRVKPKLDGQRTAADATLTREQFFWKQMSIIRADEDDVACLRDV 346
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A8J4C380_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C380_9CHLO) HSP 1 Score: 82.4 bits (202), Expect = 3.330e-16 Identity = 59/179 (32.96%), Postives = 92/179 (51.40%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAALDQSRSTDTL--------DTPLRHKHMVPADPR-DAARALRECVAYLDTVGDVA-CLDDVANL 507
I+G+N EVL + G++ GA+L +E+KK+L+ + QAE EF++WQ+ S YPF Q ITD+ G +P G +L R F +M + F+A LI+ LP+D + R+ +L PLR K A P + + +L +A L + ++ DD+ANL
Sbjct: 43 IKGKNNEVLGVTNF--GRDALGAVLGVELKKKLSWQGVRQAETEFYLWQSSSQYPFCQVITDMKIGAAYFVEGVNPE------GYLVLCVRVFGSMEPLYNFMAELINGLPSDLNDRLRPRTPSSLPVSFPKELSAPLRIKPPRHAPPHVERSTSLPPFIAALKLISEMREAEDDIANL 213
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A2J7ZKQ1_9CHLO (Uncharacterized protein n=2 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZKQ1_9CHLO) HSP 1 Score: 77.0 bits (188), Expect = 3.630e-14 Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPAD 339
++G+N EVL Y G GA+L IE+KK+L+ + QAE EF++WQ+ S YPF Q ITD+ GG A +++ G ++ R F+NM + F+A LI LP D
Sbjct: 45 VKGKNDEVLCVASYGAGPL--GAVLGIELKKKLSWQGMRQAETEFYLWQSSSQYPFCQVITDMRIGG-AYYSE-----GINDTGNMVVRYRVFNNMEQLYEFMAKLIYGLPKD 149
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A150G9U0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G9U0_GONPE) HSP 1 Score: 78.6 bits (192), Expect = 3.940e-14 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTHSSYPFYQTITDLNTGGLALWTQHSPNXXXXXRGKPLLHTRTFDNMGAFWRFVAGLISALPADTAA 348
+ G+N VL + + G E GA+L + +KK+LT + QAEA+F++WQ S YPF Q ITDL TGG+A ++ G + R F +M F+A L++ALPAD A
Sbjct: 191 VSGKNDVVLGVKSF--GTEELGAVLGVVLKKKLTRQGLRQAEAQFYLWQCSSQYPFCQVITDLQTGGVAYYSD-----GFDQEGYLRVVFRVFVDMEKLHLFMAQLVNALPADIEA 299
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Match: A0A836CEK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.010e-14 Identity = 38/46 (82.61%), Postives = 38/46 (82.61%), Query Frame = 1
Query: 1 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFH 138
IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAH A H
Sbjct: 265 IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHVRAAEHAPEH 310 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145643 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18923 ID=mRNA_18923|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=507bp|location=Sequence derived from alignment at Contig_295:34899..36021- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATAGAAGGCAGAAACGGCGAAGTGCTGATTGACCGCCGGTATTGCGACGGback to top protein sequence of jgi.p|Trimin1|145643 >Trimin1|145643|gw1.295.4.1 ID=Trimin1|145643|gw1.295.4.1|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp IEGRNGEVLIDRRYCDGQERHGAILAIEVKKRLTAHAILQAEAEFHVWQTback to top mRNA from alignment at Contig_295:34899..36021- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18923 ID=mRNA_18923|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_295:34899..36021- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_295:34899..36021- >mRNA_18923 ID=mRNA_18923|Name=jgi.p|Trimin1|145643|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=507bp|location=Sequence derived from alignment at Contig_295:34899..36021- (Tribonema minus UTEX_B_3156 )back to top |