mRNA_18910 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182484
Unique NamemRNA_18910
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A011SYY2_9HYPH (Uncharacterized protein DUF1153 n=301 Tax=cellular organisms TaxID=131567 RepID=A0A011SYY2_9HYPH)

HSP 1 Score: 180 bits (457), Expect = 1.560e-57
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYRH 273
            MTDLVRPRVKYVIGPDGSPLTIADLPP+NTRRWVIRRKAEVVAAVRGGLLSL+EACQRY LTTEEFLSWQASIDEYGLAGLRTTRIQQYRH
Sbjct:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPSNTRRWVIRRKAEVVAAVRGGLLSLEEACQRYALTTEEFLSWQASIDEYGLAGLRTTRIQQYRH 91
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A256G594_9HYPH (Uncharacterized protein n=9 Tax=Hyphomicrobiales TaxID=356 RepID=A0A256G594_9HYPH)

HSP 1 Score: 169 bits (429), Expect = 2.910e-53
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYRH 273
            MTDL RPR+KYVIGPDGSPLTIADLPP +TRRWVIRRKAEVVAAVRGGLLSL+EACQRY LT EEFL WQ+SIDE+GLAGLRTTRIQQYRH
Sbjct:    1 MTDLTRPRIKYVIGPDGSPLTIADLPPASTRRWVIRRKAEVVAAVRGGLLSLEEACQRYTLTVEEFLGWQSSIDEHGLAGLRTTRIQQYRH 91
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: D7A4C8_STAND (Uncharacterized protein n=520 Tax=Bacteria TaxID=2 RepID=D7A4C8_STAND)

HSP 1 Score: 165 bits (418), Expect = 1.390e-51
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYR 270
            MT+  RPRVKYVIGPDGSPLTIADLPP+NTRRWVIRRKAEVVAAVRGGLLSL+EAC RY LTTEEFLSWQASID +GLAGLRTTRIQQYR
Sbjct:    1 MTEPYRPRVKYVIGPDGSPLTIADLPPSNTRRWVIRRKAEVVAAVRGGLLSLEEACNRYTLTTEEFLSWQASIDRHGLAGLRTTRIQQYR 90
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A2A4R4V0_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2A4R4V0_9HYPH)

HSP 1 Score: 165 bits (418), Expect = 1.390e-51
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYR 270
            M++L+RPRVKYVIGPDGSPLTIADLPPT TRRWVIRRKAEVVAAVRGGLLSLDEAC RY LT EEFLSWQ SIDE+GLAGLRTTRIQ+YR
Sbjct:    1 MSELIRPRVKYVIGPDGSPLTIADLPPTTTRRWVIRRKAEVVAAVRGGLLSLDEACGRYTLTVEEFLSWQTSIDEHGLAGLRTTRIQEYR 90
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A0B1Q7M9_9HYPH (Uncharacterized protein n=4 Tax=Aureimonas TaxID=414371 RepID=A0A0B1Q7M9_9HYPH)

HSP 1 Score: 164 bits (414), Expect = 6.800e-51
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYR 270
            MTD VRPRVKYVIGPDGSPLT+ADLPP+NTRRWVIRRKAEVVAAVRGGLLSLDEAC +Y LT EEFLSWQASID +GLAGLRTT++Q+YR
Sbjct:    1 MTDQVRPRVKYVIGPDGSPLTVADLPPSNTRRWVIRRKAEVVAAVRGGLLSLDEACSKYTLTVEEFLSWQASIDRHGLAGLRTTQLQEYR 90
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A1U9JTK2_9HYPH (Uncharacterized protein n=1 Tax=Candidatus Tokpelaia hoelldoblerii TaxID=1902579 RepID=A0A1U9JTK2_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 1.140e-50
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYRH 273
            M DL RP VKYVIGPDGSPLTI DLPP +TRRWVIRRKAEVVAAVRGGLLSL++ACQRY LT EEFLSWQ SID++GLAGLRTTRIQQYRH
Sbjct:    1 MADLARPNVKYVIGPDGSPLTITDLPPVDTRRWVIRRKAEVVAAVRGGLLSLEDACQRYTLTVEEFLSWQISIDQHGLAGLRTTRIQQYRH 91
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A0M9GLB1_9HYPH (Uncharacterized protein n=9 Tax=Bacteria TaxID=2 RepID=A0A0M9GLB1_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 1.620e-50
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYRH 273
            MT+ +RPRVKYVIGPDGSPLTI DLPP +TRRWVIRRKAEVVAAVRGGLLSLDEAC RY LT EE+LSWQASI+E GLAGLRTTRIQQYRH
Sbjct:    1 MTEQIRPRVKYVIGPDGSPLTINDLPPASTRRWVIRRKAEVVAAVRGGLLSLDEACARYTLTVEEYLSWQASIEENGLAGLRTTRIQQYRH 91
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A1M5MM82_9HYPH (Uncharacterized protein n=8 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1M5MM82_9HYPH)

HSP 1 Score: 162 bits (410), Expect = 2.310e-50
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYR 270
            MTD +RPRVKYVIGPDGSPLTIADLPP +T+RWVIRRKAEVVAAVRGGLLSL+EACQRY LT EEF+SWQ SID++GLAGLRTTRIQQYR
Sbjct:    1 MTDQMRPRVKYVIGPDGSPLTIADLPPRDTKRWVIRRKAEVVAAVRGGLLSLEEACQRYTLTVEEFISWQQSIDQHGLAGLRTTRIQQYR 90
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A1W9KA94_9PROT (Uncharacterized protein n=2 Tax=unclassified Proteobacteria TaxID=81684 RepID=A0A1W9KA94_9PROT)

HSP 1 Score: 162 bits (410), Expect = 2.310e-50
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYRH 273
            MTD +RPRVKYVIGPDGSPLT+ADLPP +TRRWVIRRKAEVVAAVRGGLLSL+EAC+RY LT +EFLSWQASID +GL GLRTTRIQQYRH
Sbjct:    1 MTDNLRPRVKYVIGPDGSPLTLADLPPGHTRRWVIRRKAEVVAAVRGGLLSLEEACKRYTLTVDEFLSWQASIDRHGLQGLRTTRIQQYRH 91
[Close]
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Match: A0A0Q6C9X8_9HYPH (Uncharacterized protein n=42 Tax=root TaxID=1 RepID=A0A0Q6C9X8_9HYPH)

HSP 1 Score: 161 bits (407), Expect = 7.950e-50
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLLSLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYR 270
            MTD VRPRVKYVIGPDGSPLT+ADLPP+NTRRWVIRRKAEVVAAVRGGLLSL+EAC RY LT EEFLSWQ SID +GLAGLRTT++Q+YR
Sbjct:    1 MTDQVRPRVKYVIGPDGSPLTVADLPPSNTRRWVIRRKAEVVAAVRGGLLSLEEACTRYTLTVEEFLSWQISIDSHGLAGLRTTQLQEYR 90
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182484 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A011SYY2_9HYPH1.560e-5796.70Uncharacterized protein DUF1153 n=301 Tax=cellular... [more]
A0A256G594_9HYPH2.910e-5389.01Uncharacterized protein n=9 Tax=Hyphomicrobiales T... [more]
D7A4C8_STAND1.390e-5190.00Uncharacterized protein n=520 Tax=Bacteria TaxID=2... [more]
A0A2A4R4V0_9HYPH1.390e-5188.89Uncharacterized protein n=2 Tax=Hyphomicrobiales T... [more]
A0A0B1Q7M9_9HYPH6.800e-5186.67Uncharacterized protein n=4 Tax=Aureimonas TaxID=4... [more]
A0A1U9JTK2_9HYPH1.140e-5085.71Uncharacterized protein n=1 Tax=Candidatus Tokpela... [more]
A0A0M9GLB1_9HYPH1.620e-5086.81Uncharacterized protein n=9 Tax=Bacteria TaxID=2 R... [more]
A0A1M5MM82_9HYPH2.310e-5086.67Uncharacterized protein n=8 Tax=Hyphomicrobiales T... [more]
A0A1W9KA94_9PROT2.310e-5085.71Uncharacterized protein n=2 Tax=unclassified Prote... [more]
A0A0Q6C9X8_9HYPH7.950e-5085.56Uncharacterized protein n=42 Tax=root TaxID=1 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_557contigContig_557:2818..3093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182484|e_gw1.557.11.1
Preferred nameMA20_11245
DescriptionProtein of unknown function (DUF1153)
COG categoryS
Max annot lvl28211|Alphaproteobacteria
EggNOG OGs2AMHV@1|root,31CDG@2|Bacteria,1RGVA@1224|Proteobacteria,2U98Q@28211|Alphaproteobacteria,43KHU@69277|Phyllobacteriaceae
Evalue1.86e-60
Seed ortholog1287116.X734_07805
Hectar predicted targeting categoryother localisation
TranscriptId182806
TrackFilteredModels1
ProteinId182484
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182484gene_18910Tribonema minus UTEX_B_3156 geneContig_557 2818..3093 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18910_1exon_18910_1Tribonema minus UTEX_B_3156 exonContig_557 2818..3093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18910CDS_18910Tribonema minus UTEX_B_3156 CDSContig_557 2818..3093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182484Trimin1|182484|e_gw1.557.11.1Tribonema minus UTEX_B_3156 polypeptideContig_557 2818..3093 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18910 ID=mRNA_18910|Name=jgi.p|Trimin1|182484|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_557:2818..3093+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATCTGGTTAGACCGCGAGTCAAATATGTTATAGGGCCTGACGG
CAGCCCTCTTACGATTGCCGATCTGCCGCCGACGAACACCCGTCGTTGGG
TTATTCGGCGCAAGGCGGAAGTGGTTGCTGCGGTGCGGGGCGGATTGCTC
AGCCTCGACGAAGCCTGTCAGCGCTACAAACTCACGACGGAGGAATTTCT
TTCCTGGCAGGCGTCCATTGACGAATATGGCCTGGCTGGATTGCGCACGA
CGCGTATTCAGCAATACAGGCACTGA
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protein sequence of jgi.p|Trimin1|182484

>Trimin1|182484|e_gw1.557.11.1 ID=Trimin1|182484|e_gw1.557.11.1|Name=jgi.p|Trimin1|182484|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
MTDLVRPRVKYVIGPDGSPLTIADLPPTNTRRWVIRRKAEVVAAVRGGLL
SLDEACQRYKLTTEEFLSWQASIDEYGLAGLRTTRIQQYRH*
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mRNA from alignment at Contig_557:2818..3093+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18910 ID=mRNA_18910|Name=jgi.p|Trimin1|182484|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_557:2818..3093+ (Tribonema minus UTEX_B_3156 )
ATGACCGATCTGGTTAGACCGCGAGTCAAATATGTTATAGGGCCTGACGG
CAGCCCTCTTACGATTGCCGATCTGCCGCCGACGAACACCCGTCGTTGGG
TTATTCGGCGCAAGGCGGAAGTGGTTGCTGCGGTGCGGGGCGGATTGCTC
AGCCTCGACGAAGCCTGTCAGCGCTACAAACTCACGACGGAGGAATTTCT
TTCCTGGCAGGCGTCCATTGACGAATATGGCCTGGCTGGATTGCGCACGA
CGCGTATTCAGCAATACAGGCACTGA
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Coding sequence (CDS) from alignment at Contig_557:2818..3093+

>mRNA_18910 ID=mRNA_18910|Name=jgi.p|Trimin1|182484|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_557:2818..3093+ (Tribonema minus UTEX_B_3156 )
ATGACCGATCTGGTTAGACCGCGAGTCAAATATGTTATAGGGCCTGACGG
CAGCCCTCTTACGATTGCCGATCTGCCGCCGACGAACACCCGTCGTTGGG
TTATTCGGCGCAAGGCGGAAGTGGTTGCTGCGGTGCGGGGCGGATTGCTC
AGCCTCGACGAAGCCTGTCAGCGCTACAAACTCACGACGGAGGAATTTCT
TTCCTGGCAGGCGTCCATTGACGAATATGGCCTGGCTGGATTGCGCACGA
CGCGTATTCAGCAATACAGGCACTGA
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