mRNA_1888 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163571
Unique NamemRNA_1888
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A835YZ34_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ34_9STRA)

HSP 1 Score: 627 bits (1617), Expect = 6.950e-227
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1
Query:    1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHRHRVQVAAKQKTQMTKQPSISQLCTRWVKVYHLRTQRRSSESTALMALPRLQSTSSTSKRFGFACSRRICR 957
            MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHRHRVQVAAKQKTQMTKQPSISQLCTRWVKVYHLRTQRRSSESTALMALPRLQSTSSTSKRFGFACSRRICR
Sbjct:    1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHRHRVQVAAKQKTQMTKQPSISQLCTRWVKVYHLRTQRRSSESTALMALPRLQSTSSTSKRFGFACSRRICR 319          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A835Z623_9STRA (Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z623_9STRA)

HSP 1 Score: 482 bits (1240), Expect = 1.480e-170
Identity = 241/248 (97.18%), Postives = 244/248 (98.39%), Query Frame = 1
Query:    1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH 744
            MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGE+ICNAISKLAELSKSQDLDY FISYSGHGTQIKDTTGDETDGKDEAICPADFG RGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSG+ATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKA K+DEETHHDVFALVA MKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH
Sbjct:    1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEDICNAISKLAELSKSQDLDYIFISYSGHGTQIKDTTGDETDGKDEAICPADFGTRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGEATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAHKVDEETHHDVFALVADMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH 248          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A835ZCN1_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN1_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 2.530e-134
Identity = 191/249 (76.71%), Postives = 219/249 (87.95%), Query Frame = 1
Query:    1 MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHR 747
            M +S+ALCIGINYGKTANALQGCVNDA NL KLL  SGAVA EDITVLCEPTGEE+CNAIS LA+LS SQ+L+Y FISYSGHGTQ+KD TGDE DG+DEAICP+DF ++GVITDDLLKSLLQ+FN  TTVCFLADACHSGS+LD+NR YTS++CTLSGDA LPGKIAYISGCRD QTSADA+DQDSR + G MT A IK+QK++  T  DVF LVA M+KLLRA GY+QIPVL++SFDIPR F+FIP++
Sbjct:    1 MSRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPYK 249          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A836CI31_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI31_9STRA)

HSP 1 Score: 296 bits (758), Expect = 3.230e-97
Identity = 151/246 (61.38%), Postives = 183/246 (74.39%), Query Frame = 1
Query:    7 KSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH 744
            KS+ALCIGINY  +++ALQGC+NDAKNL  LL  SGAVA+ +I +LCE T  +I   ++ LA+  K   L Y FISYSGHGTQ+ D   DETDGKDE ICP+DF   GVITDD+LK  + QF + TTVCFL DACHSGSMLDLN TY + + T+SG  +L  K+  ISGCRD QTSADAFDQ S  +TGAMTSA++K+ K       DV  LVA M+K+LRAGG+SQ PVLS+SF +PRQFAFIP+
Sbjct:    4 KSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPY 249          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A836CKL4_9STRA (Putative caspase-1, p20 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL4_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.690e-62
Identity = 117/245 (47.76%), Postives = 154/245 (62.86%), Query Frame = 1
Query:   10 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIP 741
            S+AL +  NY  T   L+GC ND   L+  LV SGAV    + VL E +  +   A+  LA  S+ + L Y FI+YSGHGTQ++D  GDE DG DEAICP D    GV++DDLL+ +   F   T+V F+ DACHSGSMLDL  +Y  R C  +G A+  G+ +  ISGCRD+QTSADAF     Q+ GA+T  L+++ +   E   DVF LV    + L+ GG+ Q+PVLSSSF IPR+ AF+P
Sbjct:    3 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 246          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A6C0CTM3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTM3_9ZZZZ)

HSP 1 Score: 174 bits (440), Expect = 2.620e-49
Identity = 108/245 (44.08%), Postives = 142/245 (57.96%), Query Frame = 1
Query:    7 KSKALCIGINYGKTANA-LQGCVNDAKNLQKLLVDSGAV----AAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDAT--LPGKIAYISGCRDTQTSADAFD-QDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDI 717
            KSKA+  GINY  T  A L+GCVND +N+ K L +        A  D     + TG  I N+I KLA  S   +LD  +I YSGHG  I D  GDE+DGKDE I PAD+  RGVITDDL+K +L+ FN  T V  + D CHSG++ DL   Y         +A       I  +SGC D QTSADA++ +  R+F+GAMTS L+ A     E   + F +   +KK+LRA  ++Q+P L+SSF +
Sbjct:    2 KSKAILFGINYNNTPQARLRGCVNDVRNMAKFLKEKAKYDVVKAYTDDDDFNKVTGSYIINSIYKLAIDSHRHNLDRVWIHYSGHGCAINDRDGDESDGKDECIVPADYNYRGVITDDLIKRVLRYFNKRTQVTCIFDCCHSGTIGDLKYEYRDPHVYREENAKSKCQSNIMLLSGCMDHQTSADAYNVRGRREFSGAMTSCLLVAM----ENSSNAFEVFDDLKKMLRAKRFTQVPRLTSSFKV 242          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A835XKF2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKF2_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 1.190e-47
Identity = 100/259 (38.61%), Postives = 153/259 (59.07%), Query Frame = 1
Query:    7 KSKALCIGINYGKT-ANALQGCVNDAKNLQKLLVDS-GAVAAEDITVLCEPTGEEICNA------ISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTL-SGDATLPGKIAYISGCRDTQTSADAFDQDS-RQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDI--PRQFAFIPHR 747
            +++AL  G+NY    ++ALQGC+ND +N++  L++  GA    D+       G    +A      +S+LA L+  +DL++ +I YSGHGT++ D + DE DG DE + P+D+   GVI DD L  L +QFN  T V  + D+CHSG+++DL  ++  R CT+ + ++ +   I  +SGC D+QTSADA++ D  RQ+TGAMTS ++   +       D F LV  M+  LR   ++Q P L SSF +  P   A +P R
Sbjct:   28 RARALLFGLNYAHMPSSALQGCINDVQNMKAYLMNRLGAELVCDVATDDTAAGRTATSAMGMTRKLSELAVLTYKEDLEFVWIHYSGHGTRVVDRSKDELDGYDECLVPSDYTTAGVIPDDYLAKLFEQFNPKTRVIAVFDSCHSGTVVDLKYSWEGRACTMENSNSRVRAPIMALSGCLDSQTSADAYNVDGQRQYTGAMTSVMLHVLQTTGAAADDAFLLVDAMRAHLREQNFTQWPKLCSSFSLVLPSSRAMLPRR 286          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A7M3UPF5_POV01 (Uncharacterized protein n=1 Tax=Pyramimonas orientalis virus TaxID=455367 RepID=A0A7M3UPF5_POV01)

HSP 1 Score: 164 bits (416), Expect = 1.150e-45
Identity = 104/253 (41.11%), Postives = 149/253 (58.89%), Query Frame = 1
Query:    7 KSKALCIGINYGKTANA-LQGCVNDAKNLQKLLV-----DSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTG--DETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTS--RLCTLSGDAT-LPGKIAYISGCRDTQTSADAFD-QDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQF 729
            KSKA+  GINY  T  A L+GCVND KN+ K L      D   V +++     +  G+ I N++ KLA  S    L+  +I +SGHGT ++D+ G  DE+DG DE I P+D+   GVI DD +K +L+ FN  T V  + D CHSG++ DL   Y    R   +  + +     I  ISGC D+QTSADAF+ Q  RQ+TGAMTS L++  K   E+   +F ++  ++ LLR   + Q P+LSSSF++P+ +
Sbjct:    2 KSKAILFGINYVNTPQARLRGCVNDVKNVAKYLTKEEKYDVVKVYSDEADET-KTRGQSIVNSMYKLAIDSHRYRLERVWIHFSGHGTHVRDSYGYRDESDGNDECIVPSDYNRCGVIRDDTIKRILRMFNPTTKVTCVFDCCHSGTIGDLKYVYKKIDRTPEIENNGSKCMANICLISGCTDSQTSADAFNVQGKRQYTGAMTSCLLEVLK--NESDKSIFNVLESLRDLLRQKRFPQYPLLSSSFEVPQNY 251          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A6C0E8Z1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E8Z1_9ZZZZ)

HSP 1 Score: 158 bits (399), Expect = 5.100e-43
Identity = 97/242 (40.08%), Postives = 137/242 (56.61%), Query Frame = 1
Query:   16 ALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCE-------PTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYT--SRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDE--ETHHDVFALVAGMKKLLRAGGYSQIPVLSSS 708
            AL IGINY  T+N L GC+ND  N++ +L+ +    AE+I V+ E       PT   I N    L   +  +     +  YSGHG+ I DT GDE DGKDE I P D+   G+I+DDLL + ++    +T    L D CHSG++LDL   Y   ++  T +  + + GK+  ISGC+D QTSADA      +++GAMT+A +K+ +L E   T++ +  L   M+  LR   Y QIP LSSS
Sbjct:    5 ALLIGINYKGTSNELNGCINDVTNMRDVLIKNFGYLAENIVVMTEDQPNNLKPTALNIMNQFGSLIIKAHHKQAKEIWFHYSGHGSYIDDTNGDELDGKDEVIVPLDYEKSGMISDDLLHNYMEYLPVETRFFCLFDCCHSGTILDLKHRYLGGNKHHTENNKSKIKGKVVMISGCKDDQTSADALI--GTKWSGAMTAAFLKSMELCEYKTTYYHLLDL---MRDYLRENKYDQIPQLSSS 241          
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Match: A0A6C0M0H5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0M0H5_9ZZZZ)

HSP 1 Score: 149 bits (375), Expect = 1.790e-39
Identity = 93/241 (38.59%), Postives = 123/241 (51.04%), Query Frame = 1
Query:    4 GKSKALCIGINY-GKTANALQGCVNDAKNLQKLLVDSGAVAA----EDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADA-FDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSS 708
            GK KAL  G+NY       L+GCVND K++   L   G        ED+ ++   T + I   I +LA  S  + LD   I YSGHG  I+DT+GDE+DG DE +CP D    GVITDD L  L+  FN  T +  + D CHSGS LDL   Y +    +  D      +  ISGCRD QTSADA F     +F+GA+T  L+   K+                      G++Q+P++SSS
Sbjct:   16 GKKKALLFGLNYTASEVGRLRGCVNDIKDMSVFLRGKGFEVEMYHDEDLDLVYGTTYDGIVRGIQRLAIASWKESLDAVVIHYSGHGYYIRDTSGDESDGYDECLCPTDMDSNGVITDDYLHELINSFNPKTRITVILDCCHSGSALDLPYCYKTSYDVVIEDKKCNVNVTMISGCRDNQTSADANFGTIYDKFSGALTKNLLDILKVQPNILP--IXXXXXXXXXXXXXGFNQLPMISSS 254          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163571 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZ34_9STRA6.950e-227100.00Caspase domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z623_9STRA1.480e-17097.18Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A835ZCN1_9STRA2.530e-13476.71Peptidase C14, caspase domain-containing protein n... [more]
A0A836CI31_9STRA3.230e-9761.38Peptidase C14, caspase domain-containing protein n... [more]
A0A836CKL4_9STRA5.690e-6247.76Putative caspase-1, p20 n=2 Tax=Tribonema minus Ta... [more]
A0A6C0CTM3_9ZZZZ2.620e-4944.08Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A835XKF2_9CHLO1.190e-4738.61Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7M3UPF5_POV011.150e-4541.11Uncharacterized protein n=1 Tax=Pyramimonas orient... [more]
A0A6C0E8Z1_9ZZZZ5.100e-4340.08Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0M0H5_9ZZZZ1.790e-3938.59Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:410927..411886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163571|e_gw1.26.224.1
DescriptionCaspase domain
COG categoryDO
Max annot lvl4751|Fungi
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,3A34R@33154|Opisthokonta,3PCCQ@4751|Fungi,3V43I@5204|Basidiomycota,225NS@155619|Agaricomycetes,3H6Y7@355688|Agaricomycetes incertae sedis
Evalue8.25e-36
Seed ortholog40492.XP_007307107.1
Hectar predicted targeting categoryother localisation
TranscriptId163893
TrackFilteredModels1
ProteinId163571
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163571gene_1888Tribonema minus UTEX_B_3156 geneContig_26 410927..411886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1888_1exon_1888_1Tribonema minus UTEX_B_3156 exonContig_26 410927..411886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1888CDS_1888Tribonema minus UTEX_B_3156 CDSContig_26 410927..411886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163571Trimin1|163571|e_gw1.26.224.1Tribonema minus UTEX_B_3156 polypeptideContig_26 410927..411886 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1888 ID=mRNA_1888|Name=jgi.p|Trimin1|163571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_26:410927..411886+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAATCGAAAGCGCTTTGCATCGGCATCAACTATGGCAAGACAGC
GAATGCGCTGCAGGGATGTGTTAACGATGCAAAAAACCTGCAGAAGCTCT
TGGTCGACTCAGGTGCTGTGGCTGCAGAGGACATTACGGTGCTATGTGAG
CCGACAGGTGAGGAAATCTGCAATGCAATCTCGAAGCTTGCTGAGTTGAG
CAAGTCGCAAGATCTTGACTACACTTTCATTTCATACTCTGGACACGGAA
CACAGATCAAGGATACCACAGGGGACGAGACAGACGGTAAGGATGAAGCC
ATATGTCCAGCTGATTTCGGCATGAGAGGTGTGATTACAGATGACCTTTT
AAAGTCACTGCTGCAGCAGTTCAATAACGACACCACAGTGTGCTTTCTAG
CAGATGCTTGCCACTCTGGATCGATGCTTGACCTAAACAGAACGTATACG
TCACGGCTGTGCACATTGTCAGGAGACGCAACACTTCCAGGCAAAATTGC
CTACATATCTGGTTGTCGTGATACACAGACATCGGCCGATGCATTCGACC
AGGACAGTCGTCAATTCACTGGTGCCATGACTAGCGCACTTATCAAGGCA
CAGAAACTGGATGAAGAGACTCACCATGACGTATTTGCATTGGTGGCGGG
AATGAAAAAGCTGCTGAGAGCGGGGGGCTACTCCCAGATACCTGTGCTGA
GCTCGTCGTTTGACATCCCCAGGCAATTCGCTTTCATACCCCACAGGCAT
CGCGTGCAAGTGGCAGCGAAACAGAAGACTCAGATGACGAAACAACCAAG
TATATCACAACTATGTACACGCTGGGTGAAAGTTTACCACTTGAGAACGC
AACGGCGGTCTTCAGAGTCCACTGCGTTGATGGCCTTGCCGAGATTGCAG
AGCACTTCATCAACGTCGAAGCGGTTTGGCTTTGCCTGTAGCAGGCGCAT
TTGTAGGTAG
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protein sequence of jgi.p|Trimin1|163571

>Trimin1|163571|e_gw1.26.224.1 ID=Trimin1|163571|e_gw1.26.224.1|Name=jgi.p|Trimin1|163571|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp
MGKSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCE
PTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEA
ICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYT
SRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKA
QKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHRH
RVQVAAKQKTQMTKQPSISQLCTRWVKVYHLRTQRRSSESTALMALPRLQ
STSSTSKRFGFACSRRICR*
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mRNA from alignment at Contig_26:410927..411886+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1888 ID=mRNA_1888|Name=jgi.p|Trimin1|163571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_26:410927..411886+ (Tribonema minus UTEX_B_3156 )
ATGGGTAAATCGAAAGCGCTTTGCATCGGCATCAACTATGGCAAGACAGC GAATGCGCTGCAGGGATGTGTTAACGATGCAAAAAACCTGCAGAAGCTCT TGGTCGACTCAGGTGCTGTGGCTGCAGAGGACATTACGGTGCTATGTGAG CCGACAGGTGAGGAAATCTGCAATGCAATCTCGAAGCTTGCTGAGTTGAG CAAGTCGCAAGATCTTGACTACACTTTCATTTCATACTCTGGACACGGAA CACAGATCAAGGATACCACAGGGGACGAGACAGACGGTAAGGATGAAGCC ATATGTCCAGCTGATTTCGGCATGAGAGGTGTGATTACAGATGACCTTTT AAAGTCACTGCTGCAGCAGTTCAATAACGACACCACAGTGTGCTTTCTAG CAGATGCTTGCCACTCTGGATCGATGCTTGACCTAAACAGAACGTATACG TCACGGCTGTGCACATTGTCAGGAGACGCAACACTTCCAGGCAAAATTGC CTACATATCTGGTTGTCGTGATACACAGACATCGGCCGATGCATTCGACC AGGACAGTCGTCAATTCACTGGTGCCATGACTAGCGCACTTATCAAGGCA CAGAAACTGGATGAAGAGACTCACCATGACGTATTTGCATTGGTGGCGGG AATGAAAAAGCTGCTGAGAGCGGGGGGCTACTCCCAGATACCTGTGCTGA GCTCGTCGTTTGACATCCCCAGGCAATTCGCTTTCATACCCCACAGGCAT CGCGTGCAAGTGGCAGCGAAACAGAAGACTCAGATGACGAAACAACCAAG TATATCACAACTATGTACACGCTGGGTGAAAGTTTACCACTTGAGAACGC AACGGCGGTCTTCAGAGTCCACTGCGTTGATGGCCTTGCCGAGATTGCAG AGCACTTCATCAACGTCGAAGCGGTTTGGCTTTGCCTGTAGCAGGCGCAT TTGTAGGTAG
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Coding sequence (CDS) from alignment at Contig_26:410927..411886+

>mRNA_1888 ID=mRNA_1888|Name=jgi.p|Trimin1|163571|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_26:410927..411886+ (Tribonema minus UTEX_B_3156 )
ATGGGTAAATCGAAAGCGCTTTGCATCGGCATCAACTATGGCAAGACAGC
GAATGCGCTGCAGGGATGTGTTAACGATGCAAAAAACCTGCAGAAGCTCT
TGGTCGACTCAGGTGCTGTGGCTGCAGAGGACATTACGGTGCTATGTGAG
CCGACAGGTGAGGAAATCTGCAATGCAATCTCGAAGCTTGCTGAGTTGAG
CAAGTCGCAAGATCTTGACTACACTTTCATTTCATACTCTGGACACGGAA
CACAGATCAAGGATACCACAGGGGACGAGACAGACGGTAAGGATGAAGCC
ATATGTCCAGCTGATTTCGGCATGAGAGGTGTGATTACAGATGACCTTTT
AAAGTCACTGCTGCAGCAGTTCAATAACGACACCACAGTGTGCTTTCTAG
CAGATGCTTGCCACTCTGGATCGATGCTTGACCTAAACAGAACGTATACG
TCACGGCTGTGCACATTGTCAGGAGACGCAACACTTCCAGGCAAAATTGC
CTACATATCTGGTTGTCGTGATACACAGACATCGGCCGATGCATTCGACC
AGGACAGTCGTCAATTCACTGGTGCCATGACTAGCGCACTTATCAAGGCA
CAGAAACTGGATGAAGAGACTCACCATGACGTATTTGCATTGGTGGCGGG
AATGAAAAAGCTGCTGAGAGCGGGGGGCTACTCCCAGATACCTGTGCTGA
GCTCGTCGTTTGACATCCCCAGGCAATTCGCTTTCATACCCCACAGGCAT
CGCGTGCAAGTGGCAGCGAAACAGAAGACTCAGATGACGAAACAACCAAG
TATATCACAACTATGTACACGCTGGGTGAAAGTTTACCACTTGAGAACGC
AACGGCGGTCTTCAGAGTCCACTGCGTTGATGGCCTTGCCGAGATTGCAG
AGCACTTCATCAACGTCGAAGCGGTTTGGCTTTGCCTGTAGCAGGCGCAT
TTGTAGGTAG
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