mRNA_18822 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181936
Unique NamemRNA_18822
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181936 vs. uniprot
Match: A0A836CEC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC7_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.640e-74
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 QDIWNWVDPVMYTLVFVGAVVDLVKPGSPGANAVNGVAALFLWSKLVYYARSDEHLGPLTNMFFKVIADIRQVLALCLQPDRHMAALQAPAAALCSVSMHCLYPYQ 318
            QDIWNWVDPVMYTLVFVGAVVDLVKPGSPGANAVNGVAALFLWSKLVYYARSDEHLGPLTNMFFKVIADIRQVLALCLQPDRHMAALQAPAAALCSVSMHCLYPYQ
Sbjct:    1 QDIWNWVDPVMYTLVFVGAVVDLVKPGSPGANAVNGVAALFLWSKLVYYARSDEHLGPLTNMFFKVIADIRQVLALCLQPDRHMAALQAPAAALCSVSMHCLYPYQ 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181936 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CEC7_9STRA7.640e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_303contigContig_303:3199..3519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181936|e_gw1.303.1.1
Hectar predicted targeting categoryother localisation
TranscriptId182258
TrackFilteredModels1
ProteinId181936
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181936gene_18822Tribonema minus UTEX_B_3156 geneContig_303 3199..3519 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18822_1exon_18822_1Tribonema minus UTEX_B_3156 exonContig_303 3199..3519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18822CDS_18822Tribonema minus UTEX_B_3156 CDSContig_303 3199..3519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181936Trimin1|181936|e_gw1.303.1.1Tribonema minus UTEX_B_3156 polypeptideContig_303 3199..3519 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18822 ID=mRNA_18822|Name=jgi.p|Trimin1|181936|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_303:3199..3519+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGACATTTGGAACTGGGTGGACCCAGTCATGTACACACTTGTGTTCGT
GGGAGCCGTTGTGGATCTGGTGAAGCCGGGGTCACCTGGAGCTAATGCAG
TCAACGGCGTTGCGGCTCTGTTCCTCTGGTCGAAGCTGGTATACTATGCG
CGCTCTGATGAACATCTGGGCCCCCTCACCAACATGTTCTTCAAAGTCAT
TGCAGACATCAGGCAAGTGCTGGCGCTTTGCTTGCAACCTGACAGGCACA
TGGCAGCTCTGCAAGCCCCCGCTGCTGCCTTATGCAGCGTCAGCATGCAT
TGCCTGTATCCCTACCAATGA
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protein sequence of jgi.p|Trimin1|181936

>Trimin1|181936|e_gw1.303.1.1 ID=Trimin1|181936|e_gw1.303.1.1|Name=jgi.p|Trimin1|181936|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
QDIWNWVDPVMYTLVFVGAVVDLVKPGSPGANAVNGVAALFLWSKLVYYA
RSDEHLGPLTNMFFKVIADIRQVLALCLQPDRHMAALQAPAAALCSVSMH
CLYPYQ*
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mRNA from alignment at Contig_303:3199..3519+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18822 ID=mRNA_18822|Name=jgi.p|Trimin1|181936|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_303:3199..3519+ (Tribonema minus UTEX_B_3156 )
CAGGACATTTGGAACTGGGTGGACCCAGTCATGTACACACTTGTGTTCGT
GGGAGCCGTTGTGGATCTGGTGAAGCCGGGGTCACCTGGAGCTAATGCAG
TCAACGGCGTTGCGGCTCTGTTCCTCTGGTCGAAGCTGGTATACTATGCG
CGCTCTGATGAACATCTGGGCCCCCTCACCAACATGTTCTTCAAAGTCAT
TGCAGACATCAGGCAAGTGCTGGCGCTTTGCTTGCAACCTGACAGGCACA
TGGCAGCTCTGCAAGCCCCCGCTGCTGCCTTATGCAGCGTCAGCATGCAT
TGCCTGTATCCCTACCAATGA
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Coding sequence (CDS) from alignment at Contig_303:3199..3519+

>mRNA_18822 ID=mRNA_18822|Name=jgi.p|Trimin1|181936|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_303:3199..3519+ (Tribonema minus UTEX_B_3156 )
CAGGACATTTGGAACTGGGTGGACCCAGTCATGTACACACTTGTGTTCGT
GGGAGCCGTTGTGGATCTGGTGAAGCCGGGGTCACCTGGAGCTAATGCAG
TCAACGGCGTTGCGGCTCTGTTCCTCTGGTCGAAGCTGGTATACTATGCG
CGCTCTGATGAACATCTGGGCCCCCTCACCAACATGTTCTTCAAAGTCAT
TGCAGACATCAGGCAAGTGCTGGCGCTTTGCTTGCAACCTGACAGGCACA
TGGCAGCTCTGCAAGCCCCCGCTGCTGCCTTATGCAGCGTCAGCATGCAT
TGCCTGTATCCCTACCAATGA
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