mRNA_1879 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A836CJC6_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC6_9STRA) HSP 1 Score: 506 bits (1303), Expect = 2.850e-181 Identity = 250/252 (99.21%), Postives = 252/252 (100.00%), Query Frame = 1 Query: 1 MKIGGRETCSITSFLVVKACSTTVDEDEIDEFIGEDDDQYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 MKIGGRETCSITSFLVVKACSTTVDE+EIDEFIGEDDDQYCELCN+VKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV Sbjct: 1 MKIGGRETCSITSFLVVKACSTTVDENEIDEFIGEDDDQYCELCNSVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 252
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A835ZE58_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE58_9STRA) HSP 1 Score: 463 bits (1191), Expect = 1.340e-163 Identity = 227/252 (90.08%), Postives = 237/252 (94.05%), Query Frame = 1 Query: 1 MKIGGRETCSITSFLVVKACSTTVDEDEIDEFIGEDDDQYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 MK+GGRETCSITSFLVVK +T VDEDE+D+FI +DDDQYCELCN VKVLEPRSAQSICLTCGETN YMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIE +VLEKISQELAKTYNHDEL KVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPL+L+QTQEGELLHLF LIQAPWERLRPEGRSNMLSYSYLIHKMA +LGYP VA RFSLLKSK+KMVVQD LWKTIC ELGFRFERS Sbjct: 39 MKVGGRETCSITSFLVVKTDATLVDEDEVDDFIDKDDDQYCELCNTVKVLEPRSAQSICLTCGETNGYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEPDVLEKISQELAKTYNHDELCKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLILTQTQEGELLHLFQLIQAPWERLRPEGRSNMLSYSYLIHKMANILGYPDVAERFSLLKSKEKMVVQDSLWKTICNELGFRFERSA 290
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A835Z3I5_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I5_9STRA) HSP 1 Score: 334 bits (856), Expect = 7.720e-113 Identity = 163/252 (64.68%), Postives = 200/252 (79.37%), Query Frame = 1 Query: 1 MKIGGRETCSITSFLVVKACSTTVDEDEIDEFIGEDDDQYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 MKI CS+ +F++V A TT E+++++ + +DDD YCELCN VK + R+AQ+ICLTCG ++ YMVPDTS+REGVSIH+PYLYKR NH RDHL R+ GRESTQIE EV+E+IS ELAKT+ +EL VT DIRL+LK+LGLSRLYNHTTRIW LTT +PLVL+QTQE ELLHLFNLIQ PWE+LRP+ R N LSYSYL+HK++ LLGY VA+ F LLKSK+K+ QD W+ IC +GFRFERSV Sbjct: 25 MKIPSNVNCSLNNFIIVSAPKTT--EEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 274
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A835Z4M5_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M5_9STRA) HSP 1 Score: 244 bits (623), Expect = 4.650e-77 Identity = 118/218 (54.13%), Postives = 153/218 (70.18%), Query Frame = 1 Query: 109 DDQYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTY--NHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 D CE CN K ++ R A ++C CGE Y V DTS+REG S+HTPYLYKRSNHF+DHLKR REST+IE VLE I EL K + D++ V P++IR ILK L +S LYNHT RIW L T + P L++TQE EL+ +F+++Q PW R RP R NMLSYSY+IHK+A++LGY ++ F LLKS+DK+ QD +WK +C++LG+ F RSV Sbjct: 88 DPHICEPCNCAKSIDLRQATALCPRCGECECYNVIDTSYREGTSLHTPYLYKRSNHFKDHLKRFSARESTEIEDGVLEAIRGELGKRIYGDSDDMTAVAPEEIRAILKSLNMSHLYNHTMRIWSLVTGRRPPTLTETQERELVTMFHMVQEPWLRNRPPSRKNMLSYSYIIHKLAQMLGYDDISRHFKLLKSRDKIAFQDDMWKLVCKDLGWPFVRSV 305
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A835Z4D5_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D5_9STRA) HSP 1 Score: 233 bits (594), Expect = 7.270e-73 Identity = 124/256 (48.44%), Postives = 172/256 (67.19%), Query Frame = 1 Query: 1 MKIGGRETCSITSFLVVKACSTTVDED---EIDEFIGEDDDQYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAK-TYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 MK+ R +I +F+ V A S + + D+F+ D C+ CN +V++ R A + C CG++ + V D SFREG S+HTPYLYKRSNHFRDHLKR RE+T IE +VLE I EL K Y+ V+ ++R +LK+L LS LYNH+TRIW L T +P L++TQE L+ +F +IQAP+E+ +P+ RSNMLSYSY+I + A+LLGY +A F LLKSK+K+V QD +W+ IC+ELG+R+ RS+ Sbjct: 39 MKLAARPP-NIAAFVSVSAPSKMLSREAQQRRDDFVP--DAHLCDPCNRPRVIDTRQATATCSRCGDSQTFNVIDRSFREGTSLHTPYLYKRSNHFRDHLKRFAARETTTIEDDVLEAIRTELRKRVYDDASFKNVSQDEVRDVLKRLSLSHLYNHSTRIWTLLTGHQPPELTETQEQNLVVMFAMIQAPFEKHKPKERSNMLSYSYVISQCAKLLGYHDIARAFKLLKSKEKVVYQDAIWRKICEELGWRYARSM 291
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A836CC98_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC98_9STRA) HSP 1 Score: 210 bits (535), Expect = 5.170e-64 Identity = 108/217 (49.77%), Postives = 146/217 (67.28%), Query Frame = 1 Query: 109 DDQYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAK-TYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 D CE CN +V++ R A ++C CGE++ Y V D SFREG S+HT YLY DHLKR RE+T IE +VLE I EL K Y+ V+ ++R+ILK+L LS LYNH+TRIW L T +P LS+TQE +L+ +F ++Q +ER +P+ R NMLSYSY++ + A LLGY +AA F LLKSK+K+ QDQ+WK IC +LG+R+ RS+ Sbjct: 76 DPHNCEGCNRSRVIDTRQATAVCARCGESDMYNVIDASFREGTSLHTAYLY-----IEDHLKRFSARETTLIEDDVLESIRTELRKRVYDDASFKDVSQDEVRIILKRLSLSALYNHSTRIWTLITGNQPPSLSETQENDLVTMFAMLQTSFERNKPKERRNMLSYSYVLKQCALLLGYDEIAAAFKLLKSKEKIQFQDQVWKLICADLGWRYIRSM 287
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A6C0CDD6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CDD6_9ZZZZ) HSP 1 Score: 138 bits (347), Expect = 1.880e-35 Identity = 79/237 (33.33%), Postives = 129/237 (54.43%), Query Frame = 1 Query: 85 IDEFIGEDDDQY-----------CELCNAVKVLEPRSAQSICLTCGETNEYMVPDT--SFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 ID ++ DD Y C+LCN ++ +C CG T + ++ S+++ + + YKR NHF + L + Q +EST+I + + I E+ K N D + K+ PK ++ ILK++G ++ Y H I + + ++ LS+ +E +L LF IQ P+ P R N LSYSY++HK LL Y ++ F LLKS++K++ QDQ+WK IC +L ++F S+ Sbjct: 96 IDFYMSNIDDTYVLHNEIYMNDKCKLCNNNMSFGLIDSELVCEKCGYTEDIIINSEKCSYKDPPREVSYFAYKRINHFNEWLAQFQAKESTEISDNIYKNIFDEIHKNVNLD-IQKIKPKQMKSILKKMGYNKYYEHIPHIINVMSGKKAPCLSRKEEEQLRTLFKEIQIPFSNNCPPNRKNFLSYSYVLHKFCELLEYDYLLPYFPLLKSREKLLQQDQIWKLICNDLCWQFIESI 331
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A3G5A6Z1_9VIRU (Late transcription factor VLTF3-like protein n=1 Tax=Homavirus sp. TaxID=2487769 RepID=A0A3G5A6Z1_9VIRU) HSP 1 Score: 138 bits (347), Expect = 2.780e-34 Identity = 77/214 (35.98%), Postives = 122/214 (57.01%), Query Frame = 1 Query: 121 CELCNAVKVLEPRSAQSICLTCGETNEYMVPDT--SFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 CE CN K L +C CG + ++ ++++ V Y YKR NHF + L + Q +EST+I E+ + I EL K +D L ++T ++ ILK+LG+++ Y HTT I + P +++ E EL +F +IQ P+E+ P+ R N LSYSY++HK +LL F LLKS++K+ QD++W+ IC+EL ++F S+ Sbjct: 276 CEECNMDKTLNQAEGSYVCQNCGISEMIIIESEIPNYKDVVPDKPGYPYKRINHFNEWLSQFQAKESTEIPKEIYDLILTELHKQKFYD-LKRLTLPQMKKILKKLGITQQYEHTTHIISKLSGLPPPTINRETEEELRKMFKMIQLPFEKHCPKARINFLSYSYVLHKFCQLLELDDFIKCFPLLKSREKLRQQDKIWQAICRELKWQFIPSI 488
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A5E8CHP0_9ZZZZ (Poxvirus Late Transcription Factor VLTF3 like n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CHP0_9ZZZZ) HSP 1 Score: 135 bits (341), Expect = 5.040e-34 Identity = 77/215 (35.81%), Postives = 116/215 (53.95%), Query Frame = 1 Query: 115 QYCELCNAVKVLEPRSAQSICLTCGETNEYMVPDT--SFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERS 753 +YCE CN K+L IC CG+ +V ++++ + Y YKR NHF + L + Q +EST+I +V +K+ E+ + L +++ +R ILK+L L++ Y H I P LS+ E +L H+F IQ P+ RP+GR N LSYSY++HK LL F LLKS +K++ QD++WK ICQ + + F S Sbjct: 182 KYCEHCNTEKILSACDGMFICTKCGDCEMAIVDSDRPNYKDPSKDTSTYAYKRINHFNEWLNQFQAKESTEIPKDVYDKVLLEINRL-RITNLAELSADKMRKILKKLRLNKYYEHIPHIINKLNGLPPPKLSRETERKLRHMFREIQEPFTLYRPKGRKNFLSYSYILHKFCELLELDEFLPCFPLLKSHEKLLQQDKVWKKICQHVNWEFYPS 395
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Match: A0A6C0BUT0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BUT0_9ZZZZ) HSP 1 Score: 134 bits (337), Expect = 5.190e-34 Identity = 78/214 (36.45%), Postives = 117/214 (54.67%), Query Frame = 1 Query: 121 CELCNAVKVLEPRSAQSICLTCGETNEY--MVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 756 CE CN +++ S IC CG T + M S+ + + YKR NHF + L + Q +E+T+I + I EL K N D L KVT K IR +LK+L ++ Y++ + + ++++ L++ E L LF IQ P+ + P R N LSYSY++HK LL Y H+ F LLKS++K+ QDQ+WK IC+EL + + S Sbjct: 116 CEKCNINMLMDNISGNIICSKCGNTKQIIIMTEKNSYNDPPKEANYFAYKRINHFNEWLAQFQAKETTEIPENIYRDIYNELQKNINLD-LTKVTYKQIRDVLKKLKYNKYYDNIPHLINIISNKKAPQLNRESEEMLRSLFKEIQLPFMKHCPPTRKNFLSYSYVLHKFCELLEYDHLLCFFPLLKSREKLQQQDQIWKKICEELKWEYIPSA 328 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163644 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1879 ID=mRNA_1879|Name=jgi.p|Trimin1|163644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_26:387834..388592+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAGATAGGAGGCAGGGAAACGTGCTCCATCACTTCTTTCCTTGTGGTback to top protein sequence of jgi.p|Trimin1|163644 >Trimin1|163644|e_gw1.26.250.1 ID=Trimin1|163644|e_gw1.26.250.1|Name=jgi.p|Trimin1|163644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp MKIGGRETCSITSFLVVKACSTTVDEDEIDEFIGEDDDQYCELCNAVKVLback to top mRNA from alignment at Contig_26:387834..388592+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1879 ID=mRNA_1879|Name=jgi.p|Trimin1|163644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_26:387834..388592+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:387834..388592+ >mRNA_1879 ID=mRNA_1879|Name=jgi.p|Trimin1|163644|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_26:387834..388592+ (Tribonema minus UTEX_B_3156 )back to top |