mRNA_18716 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131571
Unique NamemRNA_18716
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A836CF36_9STRA (Actin binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF36_9STRA)

HSP 1 Score: 1208 bits (3126), Expect = 0.000e+0
Identity = 618/618 (100.00%), Postives = 618/618 (100.00%), Query Frame = 1
Query:    1 ASAYELPPNVAAAFTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSGEKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 1854
            ASAYELPPNVAAAFTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSGEKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ
Sbjct:    1 ASAYELPPNVAAAFTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSGEKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 618          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A835YV37_9STRA (Actin bundling protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV37_9STRA)

HSP 1 Score: 889 bits (2296), Expect = 0.000e+0
Identity = 444/614 (72.31%), Postives = 519/614 (84.53%), Query Frame = 1
Query:   10 YELPPNVAAAFTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSGEKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADN 1851
            Y +P +V++ FT +EI++Y+ +FK +D +G GYI++ EL+  L    +  +  ++ AAI E       RVSF+++M +MQKLK DPNS+ LLKPK+  +  ++GGHHSYS+EER+AFTEHINNCLQRD  VG RLPM  +SE+LFSEV+DGLLLCKLINHAE+DTIDERALN+PT  KPLN+F  VENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLL+SISLTACPELVALLNEDE LDDLLALQPEAILLRWFN+HL+ A  P +V NFG+DL+D  A   LL  L+P   + C E +   RA H+I  A+ MGVETFIRP DIV+GNKKLLLAFVAQLFNTNP+L V+AEVL+  TANFA LD+DDAGDTREEKVFRMWMNSLGLDGG LYI NLFSDVQDGVAI+ VMD IQPG+V WK+VN  PKNRYKK+ENGNYVIE+AKAM+LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ LST   K+IEDPE+V+WANSK AG KI+SF+DPSL+SGVFLL+VCHG+++GVV+WELV+ +  +  D+ NNAKYAISVARK+GALVFVA+EDIVEVR RMIMLFCASLWHA+N
Sbjct:    8 YAVPKSVSSYFTPDEIRLYLLSFKGYDQDGDGYIDQGELQLVLGHRDKGTTDKQIAAAIKEADLDNDSRVSFSEFMQLMQKLKTDPNSSHLLKPKLQMSEGLVGGHHSYSNEERMAFTEHINNCLQRDPHVGSRLPMPLQSEKLFSEVSDGLLLCKLINHAEYDTIDERALNVPTPTKPLNIFHKVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLASISLTACPELVALLNEDETLDDLLALQPEAILLRWFNYHLERARSPLRVHNFGRDLADSAAFEALLRQLEPELWEPCTESEPAARAQHVIAAAQRMGVETFIRPADIVNGNKKLLLAFVAQLFNTNPHLEVQAEVLEEVTANFAKLDIDDAGDTREEKVFRMWMNSLGLDGGNLYIGNLFSDVQDGVAIIAVMDTIQPGLVQWKRVNKEPKNRYKKLENGNYVIELAKAMQLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQHLSTTGTKRIEDPEVVKWANSKVAGAKIRSFSDPSLSSGVFLLQVCHGIDRGVVDWELVVTDAQSTEDKTNNAKYAISVARKLGALVFVASEDIVEVRGRMIMLFCASLWHAEN 621          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: D8LBI9_ECTSI (Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI9_ECTSI)

HSP 1 Score: 735 bits (1898), Expect = 9.170e-256
Identity = 400/678 (59.00%), Postives = 469/678 (69.17%), Query Frame = 1
Query:   19 PPNVAAAFTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSGEKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVNTATSIIGG---HHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKP-LNVFQMVENMNLALNAAKSIGCVVTNVNAKD-------------------------------------------------------------IIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALD-RAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 1854
            P  +   F+ +E       F +FD N SG I   EL++ L Q GE  S+  +  ++                       K DPNS S    K++ A +   G   +HSYSD+ER+AFTEHINNCL  D  VGPRLPM   SE LF++ +DGL+LCKLIN AEFDTID RA+N+ +  +P L++FQ +ENMNLALNAA+ IGCVVTNVNAKD                                                             IIDGN ILILGL+WQIIRIQLLSSISLT+CPELV LL E E LD LLALQPEAILLRWFN+HL+ +   ++V NFG DL DG ALS LL  LDP  C  C E    + RA HII+NAKAMG ETFI+P DI++ NKKLLLAF AQLFNTNPNL VE EV++ FT +FANL+ DD GDTREEKVFRMW+NSL +D G LYI+NLF+DVQ+G AILKVMD IQPGVV WK+VN+APKNR+KKVENGNYVI+IAK M LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ LS  K K+IEDP+IV WANSK  G KI+SF DPSL++GVFLLKVCHG+++  VNW+LV+M+P    D+ NNAKYAISVARK+GA VFVAAEDIV+V SRMIMLFCASLWH +N+
Sbjct:   11 PAPLEHEFSGQEKTKIKEAFATFDTNQSGDISMEELRALLGQLGEMPSEKHLQESMRXXXXXXXXXXXXXXXXXXXXXXKKDPNSNSAFVRKIHKAPAQHSGGMAYHSYSDDERMAFTEHINNCLAADPVVGPRLPMDPLSEDLFTQTSDGLILCKLINLAEFDTIDARAMNVVSEKRPKLSIFQKIENMNLALNAARGIGCVVTNVNAKDGGRIVRVPEGTDDRKRQKTGDLLATLRRTTVEQIPCYGAAEGEKASKCEAHKGDDWVSVRDIIDGNSILILGLVWQIIRIQLLSSISLTSCPELVCLLEEGEELDGLLALQPEAILLRWFNYHLERSSSAKRVKNFGNDLRDGEALSVLLSQLDPTVCQPCNEPPGSEARARHIISNAKAMGAETFIQPADIINANKKLLLAFCAQLFNTNPNLTVEQEVMEQFTEDFANLEDDDEGDTREEKVFRMWINSLAIDNGDLYINNLFADVQNGSAILKVMDRIQPGVVVWKRVNIAPKNRFKKVENGNYVIDIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQALS-KKGKRIEDPQIVAWANSKVEGSKIRSFGDPSLSTGVFLLKVCHGIDQSTVNWDLVVMDPANDEDKTNNAKYAISVARKLGACVFVAAEDIVQVMSRMIMLFCASLWHCENE 687          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A6H5JJ18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ18_9PHAE)

HSP 1 Score: 665 bits (1715), Expect = 7.660e-229
Identity = 373/655 (56.95%), Postives = 438/655 (66.87%), Query Frame = 1
Query:   76 FKSFDGNGSGYIERHELKSALNQSGEKASKAEVDA---AIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKP-LNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKG----------------------------------------------------AGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALD-RAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLS-----TNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 1854
            F +FD N SG I   EL++ L Q GE  S+  +     ++ E                    LK DPNS S    K++ A + +                           VGPRLPM   SE LF++ +DGL+LCKLIN AEFDTID RA+N+ +  +P L++FQ +ENMNLALNAA+ IGCVVTNVNAKDIIDGN ILILGL+WQIIRIQLLSSISLT+CPELV LL E E LD LLALQPEAILLRWFN+HL+                                                     +   ++V NFG DL DG ALS LL  LDP  C  C E    + RA HII+NAKAMG ETFI+P DI++ NKKLLLAF AQLFNTNPNL VE EV++ FT +FANL+ DD GDTREEKVFRMW+NSL +D G LYI+NLF+DVQ+G AILKVMD IQPGVV WK+VN+APKNR+KKVENGNYVI+IAK M LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ        + K K+IEDP+IV WANSK  G KI+SF DPSL++GV     CHG+++  VNW+LV+M+P    D+ NNAKYAISVARK+GA VFVAAEDIV+V SRMIMLFCASLWH +N+
Sbjct:   13 FAAFDTNQSGDISMQELRALLGQLGEMPSEKLLQVGQESMREAXXXXXXXXXXXXXXXXXXXLKKDPNSNSAFVRKIHKAPAQV---------------------------VGPRLPMDPLSEDLFTQTSDGLILCKLINLAEFDTIDARAMNVVSDKRPKLSIFQKIENMNLALNAARGIGCVVTNVNAKDIIDGNSILILGLVWQIIRIQLLSSISLTSCPELVCLLEEGEELDGLLALQPEAILLRWFNYHLEREEVGTVWNVTHSDDNVDSNKNDTRVPYFAMASSSTLVCSLFATFALLVLSIKSSSTKRVKNFGNDLRDGEALSVLLTQLDPTVCQPCNEPPGSEARARHIISNAKAMGAETFIQPADIINANKKLLLAFCAQLFNTNPNLTVEQEVMEQFTEDFANLEDDDEGDTREEKVFRMWINSLAIDNGDLYINNLFADVQNGSAILKVMDRIQPGVVVWKRVNIAPKNRFKKVENGNYVIDIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQARDGGAALSKKGKRIEDPQIVAWANSKVEGSKIRSFGDPSLSTGV-----CHGIDQSTVNWDLVVMDPANDEDKTNNAKYAISVARKLGACVFVAAEDIVQVMSRMIMLFCASLWHCENE 635          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A7S2S2Z4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2Z4_9STRA)

HSP 1 Score: 537 bits (1383), Expect = 1.060e-179
Identity = 302/627 (48.17%), Postives = 401/627 (63.96%), Query Frame = 1
Query:   22 PNVAAA---FTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSGEKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASL---LKPKVNTATSII------GGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLV-VEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSK--SAG---MKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHAD 1848
            P +AAA   FT EE+  Y   F   D +GSG +  HE+   +   GEK + A V   + E+   G   V F +++A M   K+ P  AS    L   V  A +I          HS S+EER AF+EHIN  L  D  +  RLPM   SEQLFS+ ADG++  KL+N  E  T+DERALNL +    L  FQ++EN NLA+NAAKSIGC VTN+ A D+++G P LILGL WQII+  LL+SIS+   PEL  LL EDE L+ L  L PE ILLRW N HL+  G  R+V NFGKDL+D    S LLH LDPV+C +    D  +RA H I N +AMG++ F++P+DI SGN KL L  +AQ+FN NP L  +  + +       A LDLDDAGDTREE+ FRMW+NSL ++G  LY+++LFSD+  G  +L++ D +QPG+V WKKV++ P+ R   V+N N V+ + K M L +VN+GG DI D N+K+ LAIMWQLMR  TL ++ QLS +  K I D ++V WAN+K  SAG   + I++  D SL +G FL+++C  +N   V+WELV    T Q D+I+NA+YAIS+ARK+GA VF+  EDIVEV+ +M+  F ASLW A+
Sbjct:   17 PAMAAAQYNFTTEEVAQYRELFNVTDRDGSGKLNVHEVHRLMQDVGEKLTLARVQEVVDEIDMNGDHEVDFNEFLACMHAAKSKPQGASAVGQLSGAVTKAATIYKVKGAANSEHSISEEERFAFSEHINRVLGPDPFLSQRLPMDPNSEQLFSQCADGIIFAKLVNLVEMGTVDERALNLKSK---LTKFQVIENCNLAINAAKSIGCRVTNIGATDLMEGRPHLILGLCWQIIKAHLLNSISIKDHPELFRLLEEDETLESLQKLPPEQILLRWINFHLERGGSDRRVHNFGKDLADSEVYSVLLHQLDPVNCPVIPPGDRPERALHTIRNVQAMGLKPFLKPSDIASGNAKLNLGLIAQIFNFNPGLAQLTEDDMAEIGDQLAQLDLDDAGDTREERTFRMWVNSLNIEG--LYVNDLFSDLCYGFPLLQIEDRVQPGIVPWKKVHMNPRGRIHVVDNCNMVVTLGKKMDLVLVNIGGPDIADKNKKLILAIMWQLMRLFTLKMVAQLSGDGTK-ITDKQVVAWANNKVASAGRSSLSIRNLHDSSLATGQFLIELCGAVNPNTVDWELVTAGET-QEDQISNARYAISIARKLGACVFLTPEDIVEVKPKMLFTFIASLWTAE 636          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: M4BUG7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG7_HYAAE)

HSP 1 Score: 509 bits (1311), Expect = 1.980e-167
Identity = 274/540 (50.74%), Postives = 365/540 (67.59%), Query Frame = 1
Query:  253 LKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNL-VVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSK-----SAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 1854
            L+   ++A+     ++      GG HSYS+EE +AFTEHINN LQ DKDV   +P+  ++  LFS V DG++LCKLIN A  +TIDERALN    AK LNV+Q  EN NL +NAAKSIGC V N+   D+I+G  IL+LGL+WQII+IQL S+I+L   PEL+ LL + E L+  + L P+ ILLRW N+HLK AG P+KV NF  D+ D  A S LLH + P  CDLC E    +RAAH+I NA+ + VETFI+P DI SGN KL ++FVAQLFNT P L VVE E+ Q        +  DD GDTREE+VFRMW+NSL +D   +Y+++L+SD+ DG+ +LKV+D IQ G+V W +VN+   N++K+VEN NY + + K ++ ++VNVGG DI +G +KM L+I+WQ MR   L +L  L+  +  +I D +I+ WAN K      A   I SF DPSL+ GV+LL + H +    VNW+LV  EPT  + + +NAKYAIS A+KIGA VF+  EDIVEV+ +M+M F ASL   D+Q
Sbjct:  358 LQRRASAAAQYNSTIHEVKGTAGGVHSYSEEETVAFTEHINNTLQTDKDVASIMPISVDAG-LFSAVCDGVVLCKLINKAVPETIDERALNFVKPAKELNVYQKTENQNLCINAAKSIGCSVVNIGPDDLIEGKHILVLGLVWQIIKIQLTSTINLKNHPELMRLLLDGETLEAFMKLPPDLILLRWMNYHLKAAGHPKKVTNFSTDMQDATAYSVLLHHIAPQHCDLCNESIPEERAAHVIQNARRLEVETFIKPRDITSGNPKLNMSFVAQLFNTCPALDVVEEEIKQ-----LEEILYDDVGDTREERVFRMWINSLAIDD--VYVNHLYSDLSDGMKLLKVLDKIQKGIVAWNRVNMVAPNKFKQVENCNYCVVLGKQLKFSLVNVGGADIFEGAKKMILSIVWQSMRYQQLKMLSALAAGRG-EITDKDIISWANEKVRQSGRAKGNIVSFRDPSLSDGVYLLDLVHVVEPRAVNWDLVSQEPTNDS-KASNAKYAISCAQKIGATVFLTFEDIVEVKPKMVMTFFASLMLVDHQ 887          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A024GE37_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GE37_9STRA)

HSP 1 Score: 507 bits (1306), Expect = 3.460e-167
Identity = 270/543 (49.72%), Postives = 372/543 (68.51%), Query Frame = 1
Query:  244 MQKLKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNL-VVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAK--AMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSK-----SAGMKIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHAD 1848
            + K  + P+++S++     +A    GG HSYS+ E+ AFTEHINNCL RD  +   LP+ T+ + LF  VADG+LLCKL+N A  +TID RA+N  T  K LNV++M EN+NL +NAAKSIGC V N+   D+I+G PIL+LGL+WQII+IQL S+I+L   PELV LL + E+L++ + L P+ ILLRW N+HL+GAG P ++ NF  D+ D  A S LLH + P  CDLC E+    RAAH+I NA+ + VETFI+P DI +GN KL ++FVAQLFNT P+L VVEA++ +        +  DD GDTREE+VFRMW+NS+G+DG  L+I++LFSDV+DG+A+LKV D I+ GVV W KV++   N Y+KVEN NY ++I K    + ++VN+GG DI DGN+K+ L+IMWQ MR   L +L  L+ N    I D +I+ WAN+K      +  ++ +F D  L++G++LL + H +    VNW+ V     +  ++INNAKYAIS A+K+GA VF+  EDIVEV+ +MI  F ASL   D
Sbjct:  313 VSKTGSRPHTSSVIHEVRGSA----GGVHSYSEAEKTAFTEHINNCLGRDPQLSHLLPISTDDDGLFLSVADGVLLCKLLNEAVPETIDSRAIN-NTTTKALNVYEMTENLNLCINAAKSIGCSVVNIGPVDLIEGKPILVLGLVWQIIKIQLTSTINLKNHPELVRLLLDGESLEEFMRLPPDQILLRWMNYHLQGAGHPHRISNFSSDVKDAHAYSVLLHHIAPNQCDLCNEQTGQGRAAHVIQNARHLQVETFIKPHDITNGNPKLNMSFVAQLFNTCPSLDVVEADMKK-----LNEILYDDVGDTREERVFRMWINSMGIDG--LHINHLFSDVRDGIALLKVFDRIEKGVVQWSKVHMNAPNTYQKVENCNYCVDIGKDAPFQFSLVNIGGADIFDGNKKLILSIMWQSMRHQQLKILTSLARNGGHPITDKDIIEWANAKVQQSGRSKAQMSAFRDGVLSNGIYLLDLVHAVESRAVNWDQVT-SGESDDEKINNAKYAISCAQKVGATVFLTYEDIVEVKPKMISTFVASLMSID 842          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: G4ZVS2_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZVS2_PHYSP)

HSP 1 Score: 506 bits (1304), Expect = 4.440e-166
Identity = 273/540 (50.56%), Postives = 366/540 (67.78%), Query Frame = 1
Query:  253 LKADPNSASLLKPKVNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNL-VVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSK---SAGMK--IKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 1854
            L+   ++A+     ++      GG HSYS+EE +AFTEHINN L  DKDV   +P+  ++  LF  V DG+LLCKLIN A  +TIDERALN    AK LNV+Q  EN NL +NAAKSIGC V N+   D+I+G PIL+LGL+WQII+IQL S+I+L   PEL+ LL + E L+  + L P+ ILLRW N+HLK AG P+KV NF  D+ D  A S LLH + P  CDLC E    +RAAH+I NA+ + VETFI+P DI SGN KL ++FVAQLFNT P L VVE E+ Q        +  DD GDTREE+VFRMW+NSL +D   +YI++L+SD+ DG+ +LKV+D IQ G+V W KVN+   N++K+VEN NY + + K ++ ++VNVGG DI +G +KM L+I+WQ MR   L +L +L+  +  +I D +I+ WAN K   S  +K  I SF DPSL+ G++LL + H +    VNW++V+ + T    + +NAKYAIS A+KIGA VF+  EDIVEV+ +M+M F ASL   D+Q
Sbjct:  383 LQRRASAAAQYNSTIHEVKGTAGGLHSYSEEETVAFTEHINNTLHADKDVASLMPIGMDAG-LFRAVCDGVLLCKLINAAVPETIDERALNFVKRAKELNVYQKTENQNLCINAAKSIGCSVVNIGPDDLIEGKPILVLGLVWQIIKIQLTSTINLKNHPELMRLLLDGETLEQFMKLPPDQILLRWMNYHLKAAGHPKKVTNFSTDVQDATAYSVLLHHIAPQHCDLCNEAIPEERAAHVIQNARRLEVETFIKPRDITSGNPKLNMSFVAQLFNTCPALDVVEEEIKQ-----LEEILYDDVGDTREERVFRMWINSLAIDD--VYINHLYSDLSDGMKLLKVLDKIQKGIVAWNKVNMVAPNKFKQVENCNYCVVLGKQLKFSLVNVGGADIFEGAKKMILSIVWQSMRYQQLRILSELAAGRG-EITDKDIIGWANEKVRQSGQVKGNIVSFRDPSLSDGLYLLDLVHAVEPRAVNWDMVLQDKTDDA-KASNAKYAISCAQKIGATVFLTYEDIVEVKPKMMMTFVASLMLVDHQ 912          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A1V9YBE8_9STRA (Fimbrin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBE8_9STRA)

HSP 1 Score: 501 bits (1290), Expect = 5.940e-166
Identity = 267/526 (50.76%), Postives = 359/526 (68.25%), Query Frame = 1
Query:  295 VNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKP-LNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNLVVEAEVLQNF-TANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGM----KIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHADNQ 1854
            ++ + S  GG HSYS+EE+ AF EHINNCL  D  +G  LP+      LF+ VADG+LLCKLIN A  DTID RA+N+    KP LNV++M EN NL +NAAKSIGC + N+   D+++G PIL+LGL+WQIIRIQL ++I+L   PELV LL + E L+D + L PE ILLRW N+HL  A   +K+ NFGKD++D  A S LLH + P +CDLC E  ALDRAAH+I NA+ + V+ FI+P DI SGN KL L+FVAQLFNT P        L+N   A   ++  DD GDTREE+ FRMW+NSLGL     Y+++LF+D++DG+ ILK +D ++PGVV+W K NVAP N++KKVEN NY + + K ++ ++VNVGG+DI +GN+K+ L+++WQ+MR ++L LL  L     K + + +IV WAN+K  G     ++  F D  L  GV+LL +   +    VNW+ V++   +  D+  NAKYAIS ARKIGA VF+  EDIVEV+ +MIM F ASL   + Q
Sbjct:  248 IHESRSATGGVHSYSEEEKSAFAEHINNCLAGDAHLG-YLPINPAGHDLFASVADGILLCKLINLAVPDTIDMRAVNI----KPKLNVYEMTENHNLCINAAKSIGCSIVNIGPSDLLEGKPILVLGLVWQIIRIQLTATINLKNHPELVRLLLDGETLEDFMKLPPEQILLRWVNYHLAAAHHDKKIHNFGKDVADATAYSVLLHQIAPNTCDLCRETTALDRAAHVIRNAEKLHVDAFIKPGDITSGNTKLNLSFVAQLFNTCP-------ALENVDVAELQDIFDDDGGDTREERCFRMWINSLGLS--ETYVNHLFADLKDGMVILKTLDKMEPGVVSWTKANVAPANKFKKVENCNYCVVLGKQLKFSLVNVGGVDIAEGNKKLVLSLIWQMMRHNSLKLLSSLG----KDVGEKDIVDWANAKVRGTGHHKQMVQFRDAMLADGVYLLDLVAAVEPRAVNWDAVVLAAASDDDKAANAKYAISCARKIGATVFLTYEDIVEVKPKMIMTFVASLMAIEKQ 755          
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Match: A0A662X4Y4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y4_9STRA)

HSP 1 Score: 511 bits (1316), Expect = 6.340e-166
Identity = 268/524 (51.15%), Postives = 361/524 (68.89%), Query Frame = 1
Query:  295 VNTATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALSTLLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKLLLAFVAQLFNTNPNL-VVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWMNSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLSTNKNKQIEDPEIVRWANSKSAGM-----KIKSFADPSLNSGVFLLKVCHGMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEVRSRMIMLFCASLWHAD 1848
            ++      GG HSYS+EE +AFTEHINNCL  DKDV   +P+  E   LF+ + DG+L+CKLIN A  +TIDERA+N    AK LNV+Q  EN NL +NAAKSIGC V N+   D+I+G PIL+LGL+WQII+IQL S+I+L   PEL+ LL + E L++ + L P+ ILLRW N+HLK AG P+KV NF  D+ D  A S LLH + P  CDLC E  A +RA+H+I NA+ + VETFI+P DI SGN KL ++FVAQLFNT P L V+E E+ Q        +  DD GDTREE+VFRMW+NSLG+D   +YI++L+SD+ DG+ +LKV+D IQ G+V+W KVN+   N++K+VEN NY + + K ++ ++VNVGG DI +G +KM L+I+WQ MR   LN+L +L+  +   I D +I+ WAN K  G       I +F DPSL+ G++LL + H +    VNW+++  E T +  + +NAKYAIS A+KIGA VF+  EDIVEV+ +M+M F ASL   D
Sbjct:  566 IHEVKGTAGGVHSYSEEETVAFTEHINNCLHADKDVASLMPINIEGG-LFTAICDGVLMCKLINAAVPETIDERAVNFIKKAKQLNVYQKTENQNLCINAAKSIGCSVVNIGPDDLIEGKPILVLGLVWQIIKIQLTSTINLKNHPELMRLLLDGETLEEFMKLPPDQILLRWMNYHLKAAGHPKKVTNFSTDVQDATAYSVLLHHIAPQHCDLCTESIAEERASHVIQNARRLQVETFIKPRDITSGNPKLNMSFVAQLFNTCPALDVIEEEIKQ-----LEEILYDDVGDTREERVFRMWINSLGIDD--VYINHLYSDLHDGMKLLKVLDKIQKGIVSWNKVNLVAPNKFKQVENCNYCVVLGKQLKFSLVNVGGADIFEGAKKMILSIVWQSMRYQQLNILGELAKGRG-DITDKDIIGWANEKVRGGGQVKGNIVAFRDPSLSDGLYLLDLVHAVEPRAVNWDMISREKTDEA-KASNAKYAISCAQKIGATVFLTYEDIVEVKPKMMMTFVASLMSVD 1079          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131571 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CF36_9STRA0.000e+0100.00Actin binding protein (Fragment) n=1 Tax=Tribonema... [more]
A0A835YV37_9STRA0.000e+072.31Actin bundling protein n=1 Tax=Tribonema minus Tax... [more]
D8LBI9_ECTSI9.170e-25659.00Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JJ18_9PHAE7.660e-22956.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2S2Z4_9STRA1.060e-17948.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4BUG7_HYAAE1.980e-16750.74Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A024GE37_9STRA3.460e-16749.72Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
G4ZVS2_PHYSP4.440e-16650.56Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A1V9YBE8_9STRA5.940e-16650.76Fimbrin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]
A0A662X4Y4_9STRA6.340e-16651.15Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_281contigContig_281:24548..30087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131571|gw1.281.5.1
BRITEko00000,ko04147,ko04812
KEGG koko:K17275,ko:K17276
Descriptionactin filament network formation
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5069@1|root,KOG0046@2759|Eukaryota
Evalue1.5e-256
Seed ortholog2880.D8LBI9
Hectar predicted targeting categoryother localisation
TranscriptId131893
TrackFilteredModels1
ProteinId131571
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131571gene_18716Tribonema minus UTEX_B_3156 geneContig_281 24548..30087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131571Trimin1|131571|gw1.281.5.1Tribonema minus UTEX_B_3156 polypeptideContig_281 24548..30087 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18716_1exon_18716_1Tribonema minus UTEX_B_3156 exonContig_281 24548..24703 +
exon_18716_2exon_18716_2Tribonema minus UTEX_B_3156 exonContig_281 24882..25163 +
exon_18716_3exon_18716_3Tribonema minus UTEX_B_3156 exonContig_281 26270..26395 +
exon_18716_4exon_18716_4Tribonema minus UTEX_B_3156 exonContig_281 27070..27495 +
exon_18716_5exon_18716_5Tribonema minus UTEX_B_3156 exonContig_281 27978..28149 +
exon_18716_6exon_18716_6Tribonema minus UTEX_B_3156 exonContig_281 28748..28941 +
exon_18716_7exon_18716_7Tribonema minus UTEX_B_3156 exonContig_281 29367..29651 +
exon_18716_8exon_18716_8Tribonema minus UTEX_B_3156 exonContig_281 29875..30087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18716CDS_18716Tribonema minus UTEX_B_3156 CDSContig_281 24548..24703 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18716 ID=mRNA_18716|Name=jgi.p|Trimin1|131571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1854bp|location=Sequence derived from alignment at Contig_281:24548..30087+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTTCTGCCTATGAGTTGCCTCCCAACGTGGCCGCCGCCTTCACGGCCGA
AGAGATCAAAGTGTACATGCGAACTTTCAAGAGCTTTGACGGCAATGGTA
GTGGCTACATCGAGCGGCACGAGCTCAAGTCTGCCCTGAACCAGAGCGGC
GAGAAGGCATCAAAAGCCGAGGTGGACGCTGCCATAGCGGAGGTGTTCCC
TGGTGGCTCCAAACGAGTGAGCTTCGCTGACTACATGGCAGTGATGCAGA
AGCTCAAGGCAGACCCTAACAGCGCCTCTCTGCTGAAGCCAAAGGTTAAC
ACGGCAACCAGCATCATTGGAGGGCACCACAGCTATAGCGATGAAGAGCG
AATTGCGTTCACGGAGCACATCAACAACTGTCTGCAGCGGGACAAGGACG
TCGGGCCGCGGTTGCCTATGCAGACGGAGTCTGAGCAGCTCTTCTCTGAG
GTGGCAGACGGCCTGCTGCTGTGTAAACTCATCAACCACGCTGAGTTTGA
CACGATTGACGAGCGGGCGCTCAACCTACCTACCGCCGCCAAGCCCCTCA
ACGTCTTCCAAATGGTGGAGAACATGAACCTGGCGCTGAATGCGGCCAAG
TCCATCGGCTGCGTGGTGACCAACGTCAACGCCAAGGACATCATCGACGG
CAACCCCATCCTCATCCTGGGCCTCATCTGGCAGATCATACGCATACAGC
TCCTCTCCTCCATCTCCCTCACCGCGTGCCCCGAACTCGTGGCACTGCTC
AACGAAGACGAGGCCCTAGATGACCTCCTAGCGCTGCAGCCCGAGGCCAT
CTTGCTGCGCTGGTTCAACCACCACCTCAAGGGGGCAGGCTGCCCGCGTA
AGGTCGGCAATTTCGGCAAGGACCTGAGCGATGGGGTGGCGCTGTCGACG
CTGCTGCACGTGCTGGATCCCGTGTCGTGCGACCTGTGTGAGGAGAGGGA
CGCGCTGGACCGCGCCGCACACATCATCAACAACGCCAAGGCCATGGGTG
TGGAGACCTTCATCAGGCCCACGGACATTGTGAGCGGCAACAAGAAGCTG
CTGCTGGCCTTTGTGGCCCAGCTGTTCAACACCAACCCTAACCTGGTGGT
GGAGGCGGAGGTGCTGCAGAACTTTACTGCAAACTTTGCCAACCTGGACC
TGGACGACGCAGGCGACACTCGCGAGGAGAAGGTGTTCCGCATGTGGATG
AACTCGCTGGGACTCGATGGCGGTGCACTGTACATCAGCAACCTCTTCAG
CGACGTGCAAGATGGCGTGGCCATTCTCAAGGTCATGGATGCCATACAGC
CCGGCGTTGTCAACTGGAAGAAGGTCAATGTGGCACCCAAGAACCGCTAC
AAGAAGGTGGAGAATGGCAACTACGTCATTGAGATCGCCAAGGCCATGCG
TCTCACGGTGGTCAACGTGGGTGGCCTGGACATCATTGACGGCAACCGCA
AGATGACGCTGGCAATCATGTGGCAGCTCATGCGCAGGCACACGCTCAAC
CTCCTGCAGCAGCTCAGCACCAACAAGAACAAGCAGATAGAGGACCCTGA
GATTGTACGGTGGGCCAACAGCAAGTCTGCGGGCATGAAGATCAAGTCCT
TTGCGGACCCGTCTCTCAACAGCGGCGTGTTCCTCCTCAAGGTCTGCCAC
GGCATGAACAAGGGCGTCGTCAACTGGGAGCTGGTCATCATGGAGCCCAC
CACCCAGACCGACAGGATCAACAACGCCAAGTACGCCATCAGCGTCGCGC
GCAAGATCGGCGCGCTGGTCTTTGTGGCCGCGGAAGACATAGTTGAAGTG
CGCTCGCGCATGATCATGCTCTTCTGTGCGTCGCTCTGGCACGCCGACAA
CCAG
back to top

protein sequence of jgi.p|Trimin1|131571

>Trimin1|131571|gw1.281.5.1 ID=Trimin1|131571|gw1.281.5.1|Name=jgi.p|Trimin1|131571|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=618bp
ASAYELPPNVAAAFTAEEIKVYMRTFKSFDGNGSGYIERHELKSALNQSG
EKASKAEVDAAIAEVFPGGSKRVSFADYMAVMQKLKADPNSASLLKPKVN
TATSIIGGHHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSE
VADGLLLCKLINHAEFDTIDERALNLPTAAKPLNVFQMVENMNLALNAAK
SIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSISLTACPELVALL
NEDEALDDLLALQPEAILLRWFNHHLKGAGCPRKVGNFGKDLSDGVALST
LLHVLDPVSCDLCEERDALDRAAHIINNAKAMGVETFIRPTDIVSGNKKL
LLAFVAQLFNTNPNLVVEAEVLQNFTANFANLDLDDAGDTREEKVFRMWM
NSLGLDGGALYISNLFSDVQDGVAILKVMDAIQPGVVNWKKVNVAPKNRY
KKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLN
LLQQLSTNKNKQIEDPEIVRWANSKSAGMKIKSFADPSLNSGVFLLKVCH
GMNKGVVNWELVIMEPTTQTDRINNAKYAISVARKIGALVFVAAEDIVEV
RSRMIMLFCASLWHADNQ
back to top

mRNA from alignment at Contig_281:24548..30087+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18716 ID=mRNA_18716|Name=jgi.p|Trimin1|131571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5540bp|location=Sequence derived from alignment at Contig_281:24548..30087+ (Tribonema minus UTEX_B_3156 )
GCTTCTGCCTATGAGTTGCCTCCCAACGTGGCCGCCGCCTTCACGGCCGA AGAGATCAAAGTGTACATGCGAACTTTCAAGAGCTTTGACGGCAATGGTA GTGGCTACATCGAGCGGCACGAGCTCAAGTCTGCCCTGAACCAGAGCGGC GAGAAGGTGAGGAGCAGCACTATCGGCAGAACTCATTTGCTGGCATGCGA GTACTTCTTTTCAGCTGCGAATTGCTGTTGTAATCGGAAGAGGCGCGGTG ACGAGGCTCTCGCAAAATCTAAACTCGTCTGCTCTCTAACGGCATGATTT GTCGCACTCATTGCCGTGCTTGCGATTCTTGCAGGCATCAAAAGCCGAGG TGGACGCTGCCATAGCGGAGGTGTTCCCTGGTGGCTCCAAACGAGTGAGC TTCGCTGACTACATGGCAGTGATGCAGAAGCTCAAGGCAGACCCTAACAG CGCCTCTCTGCTGAAGCCAAAGGTTAACACGGCAACCAGCATCATTGGAG GGCACCACAGCTATAGCGATGAAGAGCGAATTGCGTTCACGGAGCACATC AACAACTGTCTGCAGCGGGACAAGGACGTCGGGCCGCGGTTGCCTATGCA GACGGAGTCTGAGCAGGTGATACCAATGTGTATCTGTCCTGCTATTCATG GGATACTGGTAGTAAGAAGCCCAGTTCACTCTGCTCATGCGCCAGCAAGA ATTGCACCTCACCCTGTATGTGTGAAAAATTGCCTTTGTTTGACAGAGTT TGTGCAGCCATGTTATTATGTCCACGTACTATCCCAAGCCCATTGGGGTT GGGGTTCAAGTTTGGCTCTCAATAGCCTCGATTGCCGCACAACTCTGGCT AGCACACGCGCAGTGCCATGTGGGCAAAGTTGAGCAGTGCGCAAGTACTA CTTTGAAGTACAACAATACATTGCTTCAAGCGTGGTACGCTCAACACAAT TATCCAGTCCATGCATACATGCATTCATTTCGGGGGCCTGCACAGCAGCA GACTCATCCCACAAACTACGCATGCCATCATGCAGCGGGCAACTGTTGCT CAATAGATGTCGTACTGTGTGCCACCGAACCAGCACAGCTGGCATCAGTG TCTGTCCCAACAAGAATTGCATTGAGCAGGTGGCCATGACCGCAGTCTAA CGTGAACCATGCATAGTATGCTCAACAAGCAGCACAATGTGATTGCGCGA CGGTCATGGATAGGTAGCTACACTGACAGCCATGACGTGGTCATCTCAAT GCTGATGCAGTGCCTCAAGCAGTACACAACAAGGTGGTGAAACACCAGGC ATGCCTGGCCTATCGTACCATGTAGGCGCTGTTCATTCCTTCCCTTTGAG TTTGTTCGTTGAGCCCACATTGCAACAGTCAGTGGCACAGCCACGGTGAT GTGCTGCAAGACAACGTTGCAGTGTGGCCTTACCAGGATGACCTCTACAG GTTATATGTACTTTGAATGGAAGATGCACCACATGTACGTCTTCATGATC AGCACACACAGTGCCTCTGTCGGTGTTGCGTGCTGCCTACTGTTGCAACA TAATGGTCAGATGCTGCTGAGCGCTGCATGTGTGATGCACATACATACAT GCATACCCTCACCTTGAACAGTTGCGCGGCTAAAGTAACACTGTGCGCTT GGGATGCTGCTGAACGACTACTGACCCGGGTTGTGCCAATCGCCCTGTAC TGCACTTCAACTTCAACTGCAGCTCTTCTCTGAGGTGGCAGACGGCCTGC TGCTGTGTAAACTCATCAACCACGCTGAGTTTGACACGATTGACGAGCGG GCGCTCAACCTACCTACCGCCGCCAAGCCCCTCAACGTCTTCCAAATGGT GAGTCTCGTGCTAGCATATCCTTGCGGAAGTTCTGTATGCGCTGTTGCTT AAGGCACGAGCGATGGGCCATGCCTAGTTGTCTAATTTATGGTGTGTGCC AGTGCCCACCACTGATCATGGTGTGTGTTTTGAGCCAGATGAATGCATCC CGTGCACAATAGCTTGCAGAGGTGTGGAGGTACCTAAGTACTTCAAATGA GCAGATAAGCATGGCTCATGCTCATGGCATGGCTCATGCTCATGCATGGC TCATGCTCATGATCACAATTGACGTTCGCACAAAAAGGTATTTTCCCGTT GCTTGAAACATATACATTGCCTGCATACACTACGGCCAGGGTCAGTGTTA GGGTTAGTCCCACGCGTCACATTGTGACATGTGCCTTACATTTGATCAGC CATTGGCTACGACACTATCATCCTGGTGATGTAGGCAACAGAAAGGCCGC CATGTGCCCTGAGGCACCCAGTAATGTGCACTTTGAAAAAGAATTGTGCC TGTGCACATCGCTGCATGTCTTGCAACAGGTGTAGAACATGAACCATGTC GTCATCACCACCCTGCTGATGGCAAGTGCGCGCATTCTGCTTCTCAGCCG TGCACAGGACATTACCCATTAACTCCGATCATCACGTGCAAGTCCTCCCA TTGATCGCGCGCACACACGCAGGTGGAGAACATGAACCTGGCGCTGAATG CGGCCAAGTCCATCGGCTGCGTGGTGACCAACGTCAACGCCAAGGACATC ATCGACGGCAACCCCATCCTCATCCTGGGCCTCATCTGGCAGATCATACG CATACAGCTCCTCTCCTCCATCTCCCTCACCGCGTGCCCCGAACTCGTGG CACTGCTCAACGAAGACGAGGCCCTAGATGACCTCCTAGCGCTGCAGCCC GAGGCCATCTTGCTGCGCTGGTTCAACCACCACCTCAAGGGGGCAGGCTG CCCGCGTAAGGTCGGCAATTTCGGCAAGGACCTGAGCGATGGGGTGGCGC TGTCGACGCTGCTGCACGTGCTGGATCCCGTGTCGTGCGACCTGTGTGAG GAGAGGGACGCGCTGGACCGCGCCGCACACATCATCAACAACGCCAAGGT GCGTCGCCGCCGGAGTGTACTTCAACTCAATGAAACTGCAAGTACTTGCA CTTCCACCAGCGAGGAGGACGTACCTGTGGTGGTAGTCAGATGGGCAGTA TGTACTCATTGGCAGCTGAGAATCTGCAGTTGCAGTGGCAGTTGTCCCTG CTGCAGAGTTGACATGTTCAGTGCGCACATCAGCGTTTACTGCAAGTGGC CCATAAAGTCACAGTTGACGGCTTTAGAGGGCAATCTCAATCTGTGTTGC CAGAGTCCCAGGCCTTGCGTCTCCCCGACAACTTCCTGTGTACTTGAGTG TTATGCATGACTTTCCATTGCAGCCTTTGTAGCCAATCTACTTGTATTGC TGCTAGTGCCATACTGAGCGCAGGGCATGGTGCATGAAACCCTTCATGAG GCCTGTGGGCACAAGCTCCCCCGCTTTCCTGTTACAGCCCGTGTAACTGC CCTGTAACTGCCCTGTAACTGTCTGCGCAGGCCATGGGTGTGGAGACCTT CATCAGGCCCACGGACATTGTGAGCGGCAACAAGAAGCTGCTGCTGGCCT TTGTGGCCCAGCTGTTCAACACCAACCCTAACCTGGTGGTGGAGGCGGAG GTGCTGCAGAACTTTACTGCAAACTTTGCCAACCTGGACCTGGACGACGC AGGTAAGCTTCTCTAAGAACTGGAATAACAATGAACTATTGGCGGAGCTA GGGTTGAAGCTGTGTCAAGTGAAGTTGTAGTTGCGCCAAGCGCTGTGGCA CAGTGATGTCCCTGAGGTGTCAGCTTGCTTTGCATGGTCAAACGGACGTT GACGCAGGACACAGTTGCACTCTCGTTTCAAACCATGCGGAGACAGGAGT AGCCTTTGGATTCAATGAGGTCAGGCCGCACTTCAATGTAAGGTTGAACA TTTTTGCCACCGCGAGTTCCGCCTTCAGGCACGTGGCGCTGTCCATCCCT TCGGGCGGCGCAAAGCGCACACAGTCGCGCGTAAACACGACATTTCTCAT CTTGGACGGCATTGACCTCATTACTTCCTCCCAGTCTTCCACGCTCGCTC TAACTGGCTGGGCCCAATAATGAGGTCCAGGAGGCTACGGTGCGGTTTGC ACGGGTCCTCTGCCTTAATTGCCAGGGACATTCCCTTCGCAGCGCACTGC TGTGCCAGTACCGGCCCTGCTTGCTTACGCTGACATTATTTGCATCCTAA CCCTAGACTAACCCTGACCCTAACCCTCATTGATTCTCATGCATGTGAAG GCGACACTCGCGAGGAGAAGGTGTTCCGCATGTGGATGAACTCGCTGGGA CTCGATGGCGGTGCACTGTACATCAGCAACCTCTTCAGCGACGTGCAAGA TGGCGTGGCCATTCTCAAGGTCATGGATGCCATACAGCCCGGCGTTGTCA ACTGGAAGAAGGTCAATGTGGCACCCAAGAACCGCTACAAGAAGGTGCGC GTCATTTGCTCTGCTGATCGAAAATGACGCTCATGTGTTGAAGTTTGGAG CAGTGGTACCCCTAACCCTAACCCTAGGGCCATCTGCTGAGCTGTGGGGC TAGAGCACGCGTGTACTGCGGCTGCCATGCACGTAGGTAAGTAGGTATGT TGCTGTCTACATACCAGCCATGTCAGGGTCGTTTGACACTATGATGCTAA TGATCACCACCTGCCGGCTCTGTCAATGCTGCACTCATTGCAGTAAGACG ATGCTCGCCACGAACGGTAACATACAGCTGCTGTTCATACCTACAGTAGA AAACATGTGGCAATGGCTCATTATTCCTGTCATTACATCACGGCGCCTTG TTTCACTGACTTGATGCTGCTTCACTGACTTGGCGCTGCCTGCTTCCTCA TGTGACTTGCCTTGACTAGGTGGAGAATGGCAACTACGTCATTGAGATCG CCAAGGCCATGCGTCTCACGGTGGTCAACGTGGGTGGCCTGGACATCATT GACGGCAACCGCAAGATGACGCTGGCAATCATGTGGCAGCTCATGCGCAG GCACACGCTCAACCTCCTGCAGCAGCTCAGCACCAACAAGAACAAGCAGA TAGAGGACCCTGAGATTGTACGGTGGGCCAACAGCAAGTCTGCGGGCATG AAGATCAAGTCCTTTGCGGACCCGTCTCTCAACAGCGGCGTGTTCCTCCT CAAGGTGAGGCAGTATTCGAAGCTGAATTTGCTGCAGCTCAGCACAAGCT GTCAATGCTTTGGCGCTTGTGACGTGATGCCACATTAAGCAGATGGTGAC CACTGCATCATCATTGATAAACTGCCTCTTGCCTACGGTACTTGCGACTG TACTTGGTAGTGCAAGACTCACAGTCAAAGTCATTGAACTAACAGCTTCC TACCCACTTTTCCTGCTATCCTCACAGGTCTGCCACGGCATGAACAAGGG CGTCGTCAACTGGGAGCTGGTCATCATGGAGCCCACCACCCAGACCGACA GGATCAACAACGCCAAGTACGCCATCAGCGTCGCGCGCAAGATCGGCGCG CTGGTCTTTGTGGCCGCGGAAGACATAGTTGAAGTGCGCTCGCGCATGAT CATGCTCTTCTGTGCGTCGCTCTGGCACGCCGACAACCAG
back to top

Coding sequence (CDS) from alignment at Contig_281:24548..30087+

>mRNA_18716 ID=mRNA_18716|Name=jgi.p|Trimin1|131571|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1854bp|location=Sequence derived from alignment at Contig_281:24548..30087+ (Tribonema minus UTEX_B_3156 )
GCTTCTGCCTATGAGTTGCCTCCCAACGTGGCCGCCGCCTTCACGGCCGA
AGAGATCAAAGTGTACATGCGAACTTTCAAGAGCTTTGACGGCAATGGTA
GTGGCTACATCGAGCGGCACGAGCTCAAGTCTGCCCTGAACCAGAGCGGC
GAGAAGGCATCAAAAGCCGAGGTGGACGCTGCCATAGCGGAGGTGTTCCC
TGGTGGCTCCAAACGAGTGAGCTTCGCTGACTACATGGCAGTGATGCAGA
AGCTCAAGGCAGACCCTAACAGCGCCTCTCTGCTGAAGCCAAAGGTTAAC
ACGGCAACCAGCATCATTGGAGGGCACCACAGCTATAGCGATGAAGAGCG
AATTGCGTTCACGGAGCACATCAACAACTGTCTGCAGCGGGACAAGGACG
TCGGGCCGCGGTTGCCTATGCAGACGGAGTCTGAGCAGCTCTTCTCTGAG
GTGGCAGACGGCCTGCTGCTGTGTAAACTCATCAACCACGCTGAGTTTGA
CACGATTGACGAGCGGGCGCTCAACCTACCTACCGCCGCCAAGCCCCTCA
ACGTCTTCCAAATGGTGGAGAACATGAACCTGGCGCTGAATGCGGCCAAG
TCCATCGGCTGCGTGGTGACCAACGTCAACGCCAAGGACATCATCGACGG
CAACCCCATCCTCATCCTGGGCCTCATCTGGCAGATCATACGCATACAGC
TCCTCTCCTCCATCTCCCTCACCGCGTGCCCCGAACTCGTGGCACTGCTC
AACGAAGACGAGGCCCTAGATGACCTCCTAGCGCTGCAGCCCGAGGCCAT
CTTGCTGCGCTGGTTCAACCACCACCTCAAGGGGGCAGGCTGCCCGCGTA
AGGTCGGCAATTTCGGCAAGGACCTGAGCGATGGGGTGGCGCTGTCGACG
CTGCTGCACGTGCTGGATCCCGTGTCGTGCGACCTGTGTGAGGAGAGGGA
CGCGCTGGACCGCGCCGCACACATCATCAACAACGCCAAGGCCATGGGTG
TGGAGACCTTCATCAGGCCCACGGACATTGTGAGCGGCAACAAGAAGCTG
CTGCTGGCCTTTGTGGCCCAGCTGTTCAACACCAACCCTAACCTGGTGGT
GGAGGCGGAGGTGCTGCAGAACTTTACTGCAAACTTTGCCAACCTGGACC
TGGACGACGCAGGCGACACTCGCGAGGAGAAGGTGTTCCGCATGTGGATG
AACTCGCTGGGACTCGATGGCGGTGCACTGTACATCAGCAACCTCTTCAG
CGACGTGCAAGATGGCGTGGCCATTCTCAAGGTCATGGATGCCATACAGC
CCGGCGTTGTCAACTGGAAGAAGGTCAATGTGGCACCCAAGAACCGCTAC
AAGAAGGTGGAGAATGGCAACTACGTCATTGAGATCGCCAAGGCCATGCG
TCTCACGGTGGTCAACGTGGGTGGCCTGGACATCATTGACGGCAACCGCA
AGATGACGCTGGCAATCATGTGGCAGCTCATGCGCAGGCACACGCTCAAC
CTCCTGCAGCAGCTCAGCACCAACAAGAACAAGCAGATAGAGGACCCTGA
GATTGTACGGTGGGCCAACAGCAAGTCTGCGGGCATGAAGATCAAGTCCT
TTGCGGACCCGTCTCTCAACAGCGGCGTGTTCCTCCTCAAGGTCTGCCAC
GGCATGAACAAGGGCGTCGTCAACTGGGAGCTGGTCATCATGGAGCCCAC
CACCCAGACCGACAGGATCAACAACGCCAAGTACGCCATCAGCGTCGCGC
GCAAGATCGGCGCGCTGGTCTTTGTGGCCGCGGAAGACATAGTTGAAGTG
CGCTCGCGCATGATCATGCTCTTCTGTGCGTCGCTCTGGCACGCCGACAA
CCAG
back to top