mRNA_1870 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163595
Unique NamemRNA_1870
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163595 vs. uniprot
Match: A0A836CFK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK4_9STRA)

HSP 1 Score: 520 bits (1338), Expect = 1.310e-186
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ 756
            MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ
Sbjct:    1 MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ 252
[Close]
BLAST of jgi.p|Trimin1|163595 vs. uniprot
Match: A0A835Z7G2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G2_9STRA)

HSP 1 Score: 408 bits (1048), Expect = 6.730e-142
Identity = 199/252 (78.97%), Postives = 211/252 (83.73%), Query Frame = 1 
Query:    1 MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ 756
            +THAAAKSL+LVK+LRE+DDCEWD RAGNAAAHAGLIDVLDYLS SGCEIE N+HSIAA+SGHVHVMRWAHQKGI MDEEWFWRHLHGAQ                                 AHEAVQWMKGAGIPVT +VC  AARDGNLSVLAALRSMNVTW+EQVCTSAA+HAHLH+LKWA+KNGCPYSAPDLTFAALTSCNMAVIQYLSD+QLLTPPSILGYHEMM VTEACDTQRLSRWLLKHGYQ
Sbjct:   67 ITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGAQ---------------------------------AHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ 285
[Close]
BLAST of jgi.p|Trimin1|163595 vs. uniprot
Match: A0A835ZCP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP1_9STRA)

HSP 1 Score: 280 bits (716), Expect = 9.370e-90
Identity = 136/252 (53.97%), Postives = 170/252 (67.46%), Query Frame = 1 
Query:    1 MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ 756
            M HAA KSLK+V+LL E+DDC WD RA +AAA AG +DVL +L                               I  D E FWR LHGA +   V Q+L ++GH+D+MLLH V++ PG T  EA  AV+WM  AG P++ R C  AAR+GNL VL  LRS+ V W+E+VCT AA+HAHLH+LKWA+ +GCPYS  DLTFAALT CNMA+ +YL+DK++LT PS+LGY  M+HV+E C TQRLSRWLL HGY+
Sbjct:  157 MMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE 408
[Close]
BLAST of jgi.p|Trimin1|163595 vs. uniprot
Match: K8FDP5_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FDP5_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 5.060e-5
Identity = 24/70 (34.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   10 AAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQK 219
            A    L+L+K +REE +C+WDV   NAA   G ++++ Y   + C ++    S AAE+GH+  +++ H++
Sbjct:  135 AYTNKLELLKWIREEKNCDWDVGTINAAVRQGNLEMVKYCVANECPVDEWACSDAAENGHLECLKYLHEE 204
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163595 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CFK4_9STRA1.310e-186100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7G2_9STRA6.730e-14278.97Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCP1_9STRA9.370e-9053.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8FDP5_9CHLO5.060e-534.29Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:363498..364256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163595|e_gw1.26.8.1
Hectar predicted targeting categoryother localisation
TranscriptId163917
TrackFilteredModels1
ProteinId163595
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163595gene_1870Tribonema minus UTEX_B_3156 geneContig_26 363498..364256 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1870_1exon_1870_1Tribonema minus UTEX_B_3156 exonContig_26 363498..364256 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1870CDS_1870Tribonema minus UTEX_B_3156 CDSContig_26 363498..364256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163595Trimin1|163595|e_gw1.26.8.1Tribonema minus UTEX_B_3156 polypeptideContig_26 363498..364256 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1870 ID=mRNA_1870|Name=jgi.p|Trimin1|163595|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_26:363498..364256- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACACATGCAGCCGCAAAGTCGCTTAAGCTCGTCAAGTTGTTACGGGA
GGAGGATGACTGCGAGTGGGATGTGAGAGCGGGCAACGCAGCTGCACACG
CAGGCCTCATAGACGTTTTGGACTATCTGAGTGACAGTGGCTGTGAAATA
GAAGCGAATGTACACAGCATAGCTGCTGAGAGCGGGCACGTACACGTCAT
GAGATGGGCGCACCAGAAGGGGATTGTAATGGACGAGGAATGGTTTTGGC
GTCACCTGCACGGAGCGCAACTCACGCTCAGCGTGGCGCAGTATCTCGCT
GACAAGGGCCATATTGATAGCATGCTGCTACATGATGTGAGTGTAGCGCC
CGGGGTGACACGTCAGGAGGCGCACGAAGCTGTACAGTGGATGAAAGGCG
CTGGCATACCAGTCACACCCAGAGTGTGCGCAGCAGCAGCACGGGACGGC
AATCTGTCGGTGCTAGCTGCGTTGAGATCTATGAACGTCACCTGGAACGA
GCAAGTCTGCACCAGCGCCGCGGACCACGCTCACCTACACATTCTCAAGT
GGGCCATGAAGAACGGATGCCCGTACTCTGCCCCCGACCTCACCTTTGCA
GCACTCACATCCTGCAACATGGCTGTCATACAGTACTTGTCGGATAAGCA
GCTTCTCACACCGCCTAGCATACTAGGGTATCATGAGATGATGCATGTAA
CGGAGGCATGCGATACACAGCGCCTGTCCAGATGGCTGCTCAAGCACGGA
TATCAGTAA
back to top

protein sequence of jgi.p|Trimin1|163595

>Trimin1|163595|e_gw1.26.8.1 ID=Trimin1|163595|e_gw1.26.8.1|Name=jgi.p|Trimin1|163595|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEI
EANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLA
DKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDG
NLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFA
ALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHG
YQ*
back to top

mRNA from alignment at Contig_26:363498..364256-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1870 ID=mRNA_1870|Name=jgi.p|Trimin1|163595|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_26:363498..364256- (Tribonema minus UTEX_B_3156 )
ATGACACATGCAGCCGCAAAGTCGCTTAAGCTCGTCAAGTTGTTACGGGA
GGAGGATGACTGCGAGTGGGATGTGAGAGCGGGCAACGCAGCTGCACACG
CAGGCCTCATAGACGTTTTGGACTATCTGAGTGACAGTGGCTGTGAAATA
GAAGCGAATGTACACAGCATAGCTGCTGAGAGCGGGCACGTACACGTCAT
GAGATGGGCGCACCAGAAGGGGATTGTAATGGACGAGGAATGGTTTTGGC
GTCACCTGCACGGAGCGCAACTCACGCTCAGCGTGGCGCAGTATCTCGCT
GACAAGGGCCATATTGATAGCATGCTGCTACATGATGTGAGTGTAGCGCC
CGGGGTGACACGTCAGGAGGCGCACGAAGCTGTACAGTGGATGAAAGGCG
CTGGCATACCAGTCACACCCAGAGTGTGCGCAGCAGCAGCACGGGACGGC
AATCTGTCGGTGCTAGCTGCGTTGAGATCTATGAACGTCACCTGGAACGA
GCAAGTCTGCACCAGCGCCGCGGACCACGCTCACCTACACATTCTCAAGT
GGGCCATGAAGAACGGATGCCCGTACTCTGCCCCCGACCTCACCTTTGCA
GCACTCACATCCTGCAACATGGCTGTCATACAGTACTTGTCGGATAAGCA
GCTTCTCACACCGCCTAGCATACTAGGGTATCATGAGATGATGCATGTAA
CGGAGGCATGCGATACACAGCGCCTGTCCAGATGGCTGCTCAAGCACGGA
TATCAGTAA
back to top

Coding sequence (CDS) from alignment at Contig_26:363498..364256-

>mRNA_1870 ID=mRNA_1870|Name=jgi.p|Trimin1|163595|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_26:363498..364256- (Tribonema minus UTEX_B_3156 )
ATGACACATGCAGCCGCAAAGTCGCTTAAGCTCGTCAAGTTGTTACGGGA
GGAGGATGACTGCGAGTGGGATGTGAGAGCGGGCAACGCAGCTGCACACG
CAGGCCTCATAGACGTTTTGGACTATCTGAGTGACAGTGGCTGTGAAATA
GAAGCGAATGTACACAGCATAGCTGCTGAGAGCGGGCACGTACACGTCAT
GAGATGGGCGCACCAGAAGGGGATTGTAATGGACGAGGAATGGTTTTGGC
GTCACCTGCACGGAGCGCAACTCACGCTCAGCGTGGCGCAGTATCTCGCT
GACAAGGGCCATATTGATAGCATGCTGCTACATGATGTGAGTGTAGCGCC
CGGGGTGACACGTCAGGAGGCGCACGAAGCTGTACAGTGGATGAAAGGCG
CTGGCATACCAGTCACACCCAGAGTGTGCGCAGCAGCAGCACGGGACGGC
AATCTGTCGGTGCTAGCTGCGTTGAGATCTATGAACGTCACCTGGAACGA
GCAAGTCTGCACCAGCGCCGCGGACCACGCTCACCTACACATTCTCAAGT
GGGCCATGAAGAACGGATGCCCGTACTCTGCCCCCGACCTCACCTTTGCA
GCACTCACATCCTGCAACATGGCTGTCATACAGTACTTGTCGGATAAGCA
GCTTCTCACACCGCCTAGCATACTAGGGTATCATGAGATGATGCATGTAA
CGGAGGCATGCGATACACAGCGCCTGTCCAGATGGCTGCTCAAGCACGGA
TATCAGTAA
back to top