mRNA_18677 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A835YXY9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY9_9STRA) HSP 1 Score: 258 bits (659), Expect = 2.050e-87 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 Query: 1 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPLRR 363 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPLRR Sbjct: 1 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPLRR 121
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: I0YLH9_COCSC (UBC-like protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLH9_COCSC) HSP 1 Score: 166 bits (421), Expect = 1.990e-50 Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 1 Query: 1 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPLRR 363 +G F FDI LP YP PEV FLTTG G VRFNPNLYN GKVCLSLLGTW GP W+P STLLQV VSIQS+ILV DP+FNEPGYE TP G S SYN IR TL A+L+ L++ Sbjct: 14 NGCFLFDILLPPEYPNKPPEVQFLTTGAGRVRFNPNLYNCGKVCLSLLGTWSGPSWDPGTSTLLQVLVSIQSMILVEDPYFNEPGYESSRNTPSGKQHSNSYNANIRRATLEHAVLDTLKK 134
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A0M0JC84_9EUKA (Baculoviral iap repeat-containing protein 6 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JC84_9EUKA) HSP 1 Score: 167 bits (422), Expect = 3.730e-50 Identity = 78/121 (64.46%), Postives = 93/121 (76.86%), Query Frame = 1 Query: 4 GLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGP---GWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPL 357 G F FDI P YP VAP+V+ TTG GSVRFNPNLYN GKVCLSLLGTW+G W P STLLQV +SIQ+LILVPDP+FNEPG+E + GTP+GD +S YN+TIR GT+R+A++ L Sbjct: 24 GCFVFDILAPAEYPNVAPKVNLQTTGGGSVRFNPNLYNCGKVCLSLLGTWQGDDGESWHPKTSTLLQVLMSIQALILVPDPFFNEPGFERNRGTPEGDRQSRQYNETIREGTVRYAMISQL 144
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A7S4DEX5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEX5_HETAK) HSP 1 Score: 171 bits (434), Expect = 2.790e-49 Identity = 81/119 (68.07%), Postives = 89/119 (74.79%), Query Frame = 1 Query: 4 GLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPLR 360 G FEFD+RLP RYP P+V +TTG+G VRFNPNLY GKVCLSLLGTW GPGW P KSTLLQV VSIQSLILVPDP+FNEPGYE M T +G ESE YN +R TL AI L+ Sbjct: 54 GCFEFDLRLPPRYPDCPPQVKLVTTGSGKVRFNPNLYADGKVCLSLLGTWSGPGWVPGKSTLLQVLVSIQSLILVPDPYFNEPGYESQMNTAQGRRESERYNAQVRKDTLMHAIFSQLK 172
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A7R9W000_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9W000_9CHLO) HSP 1 Score: 166 bits (421), Expect = 8.740e-49 Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 4 GLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAIL 348 G F FDI LP YP P+VHFLTTG G VRFNPNLYN GKVCLSLLGTW GP W+P STLLQV VSI ++ILVPDP+FNEP YE M TP+G A S++YN++IRA T+ A+L Sbjct: 111 GAFVFDILLPPDYPNHPPQVHFLTTGEGRVRFNPNLYNCGKVCLSLLGTWSGPSWQPGTSTLLQVLVSISAMILVPDPFFNEPSYERMMHTPQGCANSKAYNESIRANTMSVAVL 225
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A7S0N848_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N848_9CRYP) HSP 1 Score: 160 bits (405), Expect = 4.890e-48 Identity = 76/121 (62.81%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 1 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPLRR 363 +GLFEFD+ LP YP V P+V TTG G VRFNPNLY G VCLSLLGTW GPGWEP +S+LLQV VSIQSLI+VPDP+FNEPG E P G +++YN IR TLR A+L L+R Sbjct: 30 NGLFEFDVLLPPDYPNVPPQVRLTTTGGGRVRFNPNLYADGTVCLSLLGTWSGPGWEPGRSSLLQVLVSIQSLIMVPDPYFNEPGLESQAKMPAGRRAADNYNAQIRLQTLRVAVLGQLQR 150
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A7S4NL45_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NL45_9EUKA) HSP 1 Score: 156 bits (395), Expect = 6.190e-47 Identity = 73/110 (66.36%), Postives = 83/110 (75.45%), Query Frame = 1 Query: 28 LPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPL 357 LP YP P +TTGNGS RFNPNLY GKVCLSLLGTW GP W+PN STLLQV VSIQSLILVPDP+FNEPGYE MGT +G SE+YN+TI+ GT+ A+ + L Sbjct: 2 LPHTYPQKPPLCQLVTTGNGSFRFNPNLYACGKVCLSLLGTWSGPAWDPNVSTLLQVLVSIQSLILVPDPYFNEPGYERSMGTRQGKISSENYNKTIKGGTISHAMCDIL 111
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A7S2SX03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SX03_9STRA) HSP 1 Score: 168 bits (426), Expect = 6.470e-47 Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 1 Query: 1 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPL 357 +G FEFDI LP YP P+V +TTG GSVRFNPNLYN+GKVCLSLLGTW+GPGW+ NKSTLLQV VSIQSLI+VPDP+FNEPG+++ + TP G S YN T+R T+R A+ L Sbjct: 414 NGCFEFDIWLPAAYPNEPPKVQLMTTGRGSVRFNPNLYNNGKVCLSLLGTWQGPGWDANKSTLLQVLVSIQSLIMVPDPFFNEPGFQNMLNTPAGRLSSSQYNTTVREATVRHAMTAQL 532
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: A0A6V2FBS3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FBS3_9STRA) HSP 1 Score: 167 bits (423), Expect = 7.580e-47 Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 1 Query: 1 DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAI 345 +G F FDI LP YP V+P+V FLTTG G +RFNPNLYN GKVCLSLLGTW GPGW +STLLQV +SIQSLILVPDP++NEP Y+ GTPKG A S+SYN+TIR T+ AI Sbjct: 289 NGCFLFDINLPGTYPKVSPKVRFLTTGGGKLRFNPNLYNCGKVCLSLLGTWAGPGWVAGQSTLLQVLISIQSLILVPDPYYNEPAYDTSRGTPKGIAASKSYNKTIRGYTISAAI 403
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.220e-46 Identity = 79/118 (66.95%), Postives = 89/118 (75.42%), Query Frame = 1 Query: 4 GLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQVFVSIQSLILVPDPWFNEPGYEHDMGTPKGDAESESYNQTIRAGTLRFAILEPL 357 G FEFDI LP YP P+VHFLTTG+G VRFNPNLY +GKVCLSLLGTW GPGW P STLLQV +SIQSLI V +P+FNEPG+E +GTP+G S SYN IR GTL +LE L Sbjct: 761 GCFEFDILLPPDYPNSPPKVHFLTTGSGRVRFNPNLYQTGKVCLSLLGTWAGPGWNPKTSTLLQVLISIQSLIFVAEPYFNEPGFEGQLGTPQGRVASSSYNTRIRNGTLLLGVLEAL 878 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138406 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18677 ID=mRNA_18677|Name=jgi.p|Trimin1|138406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_274:73328..75536+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GACGGCCTGTTCGAATTCGATATTCGCTTGCCCCAGAGGTACCCGGTGGTback to top protein sequence of jgi.p|Trimin1|138406 >Trimin1|138406|gw1.274.12.1 ID=Trimin1|138406|gw1.274.12.1|Name=jgi.p|Trimin1|138406|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp DGLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTback to top mRNA from alignment at Contig_274:73328..75536+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18677 ID=mRNA_18677|Name=jgi.p|Trimin1|138406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2209bp|location=Sequence derived from alignment at Contig_274:73328..75536+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_274:73328..75536+ >mRNA_18677 ID=mRNA_18677|Name=jgi.p|Trimin1|138406|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_274:73328..75536+ (Tribonema minus UTEX_B_3156 )back to top |