mRNA_1863 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A835Z2U3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U3_9STRA) HSP 1 Score: 548 bits (1412), Expect = 3.490e-197 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
Query: 1 MSSSDSTEASSSASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN 819
MSSSDSTEASSSASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN
Sbjct: 1 MSSSDSTEASSSASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKSN 273
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A835ZBG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG6_9STRA) HSP 1 Score: 477 bits (1228), Expect = 3.470e-169 Identity = 231/262 (88.17%), Postives = 252/262 (96.18%), Query Frame = 1
Query: 31 SSASEGRVQETA-RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHK 813
SS++E VQE RPE+LIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQF+D+PKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSY+F ++K+SPD+++ANCMSYIINI QPTE SAKGVDIPVFKDHFI+VLEAGTGFMCVKR+V++ MI++YPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSED+AFCRRWRDLGGSV+LNTRCNLMHSGQHV+F NFIKSISHK
Sbjct: 7 SSSTEPNVQELKQRPEILIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFVDNPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYNFKKYKESPDDDMANCMSYIINITQPTEDSAKGVDIPVFKDHFIKVLEAGTGFMCVKRQVLEAMIEAYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDFAFCRRWRDLGGSVFLNTRCNLMHSGQHVYFANFIKSISHK 268
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A835YZ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ92_9STRA) HSP 1 Score: 466 bits (1199), Expect = 7.880e-165 Identity = 220/260 (84.62%), Postives = 246/260 (94.62%), Query Frame = 1
Query: 34 SASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHS-AKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
S S G + E RPEVLIATPAYNGAVTTHYFESM+QLARVA+KEHNIG+TVTTISTESLITRARNMMVAQFMD+PKFTHLLFVDAD+GFPPEAVVDL+KADFPVSACPYPRK+YDF +FK+S ++N+ NCMSYIINI+QP E++ +G+DIPVFKDHFIQVLEAGTGFMCVKREV++ M ++YPELRHKLE+ASYGR+GWLYGLFDTMVEPITRRFLSEDYAFC+RWRDLGGSV+LNTRCNLMHSGQHVFFGNFIKSISH
Sbjct: 2 STSAGTISEVQRPEVLIATPAYNGAVTTHYFESMMQLARVADKEHNIGVTVTTISTESLITRARNMMVAQFMDNPKFTHLLFVDADVGFPPEAVVDLVKADFPVSACPYPRKAYDFKKFKESSEDNVHNCMSYIINIMQPPENADGQGIDIPVFKDHFIQVLEAGTGFMCVKREVIEQMQEAYPELRHKLEIASYGREGWLYGLFDTMVEPITRRFLSEDYAFCKRWRDLGGSVFLNTRCNLMHSGQHVFFGNFIKSISH 261
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A835Z585_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z585_9STRA) HSP 1 Score: 317 bits (813), Expect = 9.450e-106 Identity = 150/250 (60.00%), Postives = 192/250 (76.80%), Query Frame = 1
Query: 67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISHKS 816
R EVL+ATP YN +++ YFES+++ VAE HNIGI VTTISTESLITRARNM A +++ F+HL F+D+DIGF PEA++DLI ADF VSACPYPRKSYDFA+FK + +++ CMSYI+NI T V +P+FK HF++V EAGTGFMC+KR V++ M +YPEL+H+L+ G L+ FDTM+EP TRR+LSEDYAFCRRW+D+GGSVYLNTR NL HSG H+F G+F+KSI+ K+
Sbjct: 24 RAEVLVATPCYNASLSVQYFESVMRAIAVAEA-HNIGIHVTTISTESLITRARNMQAALLLNNKVFSHLCFIDSDIGFSPEAIIDLIDADFDVSACPYPRKSYDFAKFKAAKTDDMRECMSYILNIFGSTAQVDPTVSLPMFKSHFVKVNEAGTGFMCIKRNVLERMAQAYPELQHRLDTPVEGTGDILHSFFDTMIEPGTRRYLSEDYAFCRRWKDMGGSVYLNTRVNLTHSGNHLFTGDFVKSITQKT 272
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A2E8NVM1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8NVM1_9EURY) HSP 1 Score: 183 bits (465), Expect = 1.740e-52 Identity = 102/259 (39.38%), Postives = 158/259 (61.00%), Query Frame = 1
Query: 76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLI-------KADFPVSACPYPRKS------YDFARFKKSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGR-DGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
+ IATPAY G V Y ++M+++ + K++N+ T+ TI+ ESLITR RN + A FM DPKFT ++F+DADI F E+V+ L V+ YP+KS Y + +PDE + SY++NI T+ + IP+ +D I V + GTGFM K++V+Q M D +PEL +K ++ + + D ++Y LFDT+++P TRR+LSEDY FCRR+++LGG ++++ NL H G ++F GN ++
Sbjct: 57 LFIATPAYGGLVGEAYLKAMVKVG-IMFKQYNLNFTLCTIANESLITRGRNTLTAMFMSDPKFTDMMFIDADIHFEAESVLKLWAHINNPNNPKVEVAIGSYPKKSINWPQIYQAVKKGATPDEMQLHQGSYVLNI--RTDDKGR---IPL-QDGLIPVYDGGTGFMMYKKQVIQRMFDKWPELHYKNDLNTDPKHDPYMYALFDTLIDPKTRRYLSEDYTFCRRYQELGGQIWMDPSINLDHQGNYLFKGNIANQFTY 308
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A158DYX6_9BURK (Uncharacterized protein n=2 Tax=Caballeronia glebae TaxID=1777143 RepID=A0A158DYX6_9BURK) HSP 1 Score: 177 bits (449), Expect = 3.220e-51 Identity = 108/248 (43.55%), Postives = 145/248 (58.47%), Query Frame = 1
Query: 79 LIATPAYNGAVTTHYFESMIQLARVAEKEHNIGIT--VTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMSYIIN--IIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWL-YGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSIS 807
L TP Y G V ++ +S++ L K IG++ V S ESLITRARN VA F+ D FTHL ++D+DIGF + + L+ AD V A YP KS+DF P + A ++ ++ +S GV V D F++V EA TGFMC+KR V++ MI+ PEL++ + R L Y FD MVEP T R+LSEDYAFCRRWRDLGG V+++T+ L H G + + GNF SIS
Sbjct: 4 LFMTPCYGGNVAANFAKSVLALNSALWK---IGMSGEVCIRSGESLITRARNEAVAHFLLDASFTHLFWIDSDIGFTVDQIFRLLLADRDVVAGVYPLKSFDF------PAQLAAGLTRQVLTSKFLRYPVNSHDGVSNVVDDDGFLEVSEAPTGFMCIKRSVIETMINRLPELKYVPDGPPNSRTHDLCYRFFDVMVEPATGRYLSEDYAFCRRWRDLGGRVFVDTQSKLSHQGLYTWLGNFSASIS 242
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A2E3IGL0_9BACT (Uncharacterized protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3IGL0_9BACT) HSP 1 Score: 180 bits (456), Expect = 3.710e-51 Identity = 102/261 (39.08%), Postives = 162/261 (62.07%), Query Frame = 1
Query: 76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVV---------DLIKADFPVSACPYPRKSYDFARFKK------SPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGR-DGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
+ IATPAY G V Y ++M+++ + K++N+ T+ TI+ ESLITR RN + A FM DPKFT ++F+DADI F E+V+ +L + V A YP+KS ++ + + S +E + SY++N+ KG IP+ +D I V + GTGFM KREV+Q M+D +P+L +K ++ + + D ++Y LFDT+++P TRR+LSEDY FCRR+++LGG+++++ NL H G ++F GN ++
Sbjct: 56 LFIATPAYGGLVGEAYLKAMVKVG-ILFKQYNLNFTLCTIANESLITRGRNTLTAMFMSDPKFTDMMFIDADIHFEAESVIKLWAHLNNPNLEXTEVVVGA--YPKKSINWKQMHQAVKDGASVEEMQHHQGSYVLNM----RADNKG-RIPL-QDGLIPVYDGGTGFMMYKREVIQRMMDKWPDLHYKNDLNTNPKHDPYMYALFDTIIDPTTRRYLSEDYTFCRRYQELGGTIWMDPSINLDHQGNYLFKGNISNQFTY 307
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A2W5QW53_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A2W5QW53_9CAUL) HSP 1 Score: 176 bits (447), Expect = 6.240e-51 Identity = 89/250 (35.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 67 RPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENI----ANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSI 804
+P + +A P Y G +T H+ +S++ L + A +E +G+ V + E+LITR R+ + AQF+ P+ THLLF+DADI FPP+ V L+ + V A P K D+ + +K+ ++ + A + Y++ + ++S + D F QV GTGF+ + R+ +Q + D++PELR K+ + +FDTM+EP T ++LSEDYAFCRRWRDLGG ++ + L H G + G+ ++++
Sbjct: 6 KPYIYLAVPCYGGQLTLHFVQSLLTL-KDACRERGVGLHVEMMGGEALITRGRSRLAAQFLAHPEATHLLFIDADIAFPPKTVFRLLDSGKDVIAAVCPLKKIDWGKVRKAVEKGVTDLQAASIGYVVRFLPNPQNSVE------VNDGFAQVAYGGTGFLMIARDAMQRLFDAHPELRAKMRDMADNAAAETVMVFDTMIEPETGQYLSEDYAFCRRWRDLGGEIWADFEARLTHVGHAAYTGSLMQAL 248
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A1Z8S7W8_9FLAO (Uncharacterized protein n=1 Tax=Crocinitomicaceae bacterium TMED45 TaxID=1986728 RepID=A0A1Z8S7W8_9FLAO) HSP 1 Score: 178 bits (451), Expect = 1.290e-50 Identity = 94/254 (37.01%), Postives = 155/254 (61.02%), Query Frame = 1
Query: 76 VLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFK------KSPDENIANCMSYIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEM---ASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSISH 810
+ IATPAY G V Y ++M+++ + K + + T+ TI+ ESLITR RN +V+ FM DPKFT ++F+DADI F E+++ + D + YP+K ++ + + +E + SY++NI + G +P+ ++ I V + GTGFM KR V+Q M+D +PEL +K ++ +Y + + Y LFDT+++P T+R+LSEDY FCRRW++LGG+++++ NL H G ++F GN ++
Sbjct: 59 LFIATPAYGGLVGEAYLKAMVRVG-ILFKTYGLNFTLATIANESLITRGRNTLVSMFMSDPKFTDMIFIDADIHFDAESIIRMWAKDVDIVTGAYPKKMVNWKGIRDAVIRGEKEEELHKHQASYVLNI-----KTDDGGRVPM-QNGLIPVYDGGTGFMMFKRSVIQKMMDKWPELWYKNDLNTDPAYNK--YCYALFDTIIDPDTKRYLSEDYTFCRRWQELGGTIWMDPTINLDHQGAYLFNGNISNQFTY 303
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Match: A0A1E4GNV7_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GNV7_9CAUL) HSP 1 Score: 175 bits (444), Expect = 1.710e-50 Identity = 95/255 (37.25%), Postives = 150/255 (58.82%), Query Frame = 1
Query: 52 VQETARPEVLIATPAYNGAVTTHYFESMIQLARVAEKEHNIGITVTTISTESLITRARNMMVAQFMDDPKFTHLLFVDADIGFPPEAVVDLIKADFPVSACPYPRKSYDFARFKKSPDENIANCMS----YIINIIQPTEHSAKGVDIPVFKDHFIQVLEAGTGFMCVKREVVQMMIDSYPELRHKLEMASYGRDGWLYGLFDTMVEPITRRFLSEDYAFCRRWRDLGGSVYLNTRCNLMHSGQHVFFGNFIKSI 804
+ ET RP + +A P Y G +T H+ S+++L +E +IG+ V + E+LITR R+ + AQF+ P TH+LFVDADIGF PE V L+++ V A P K D+ + + + ++A+ S Y++ + ++S + VD D F +V GTGF+ + RE +Q + D++PELR ++ + +FDTM+EP T ++LSEDYAFCRRWRDLGG ++ + L H G + G+ I+++
Sbjct: 1 MSETPRPFIYLAVPCYGGQLTLHFVSSLLRLQEAC-RERDIGLHVEMMGGEALITRGRSRLAAQFLAHPDSTHILFVDADIGFAPENVFRLLESKRDVVAAVCPLKHIDWEKARAAAKADVADLQSVAIGYVVRFLPNPQNSVE-VD-----DGFAKVAYGGTGFLMISREAMQRICDAHPELRARMGDMADKLAPEAVMVFDTMIEPETGQYLSEDYAFCRRWRDLGGEIWADVTARLTHVGHAAYTGSLIQAL 248 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163613 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1863 ID=mRNA_1863|Name=jgi.p|Trimin1|163613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_26:341572..342393- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCAGCTCTGACAGTACTGAAGCCAGCAGCAGCGCTTCTGAGGGCAGback to top protein sequence of jgi.p|Trimin1|163613 >Trimin1|163613|e_gw1.26.87.1 ID=Trimin1|163613|e_gw1.26.87.1|Name=jgi.p|Trimin1|163613|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp MSSSDSTEASSSASEGRVQETARPEVLIATPAYNGAVTTHYFESMIQLARback to top mRNA from alignment at Contig_26:341572..342393- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1863 ID=mRNA_1863|Name=jgi.p|Trimin1|163613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_26:341572..342393- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:341572..342393- >mRNA_1863 ID=mRNA_1863|Name=jgi.p|Trimin1|163613|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_26:341572..342393- (Tribonema minus UTEX_B_3156 )back to top |