mRNA_18562 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182100
Unique NamemRNA_18562
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A836CDN5_9STRA (ABC transporter type 1, transmembrane domain MetI-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN5_9STRA)

HSP 1 Score: 281 bits (719), Expect = 7.240e-96
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPRDFGPGGSRLYAVLRWPRAVPSASSRP 426
            LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPRDFGPGGSRLYAVLRWPRAVPSASSRP
Sbjct:    1 LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPRDFGPGGSRLYAVLRWPRAVPSASSRP 142
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A521LJK9_9HYPH (Amino acid ABC transporter permease n=1 Tax=Bosea sp. TaxID=1871050 RepID=A0A521LJK9_9HYPH)

HSP 1 Score: 179 bits (453), Expect = 1.750e-52
Identity = 93/115 (80.87%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARP 345
            LIRGGLQALGRGQTEAA ALGLGYW+ LALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFD    ++         GFGTEAYLFAG IYF FCFAMSRYGL LE+RLARP
Sbjct:  254 LIRGGLQALGRGQTEAAIALGLGYWKVLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDQLNAAKSAVAEPAWQGFGTEAYLFAGTIYFAFCFAMSRYGLRLEKRLARP 368
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A8I1P4H7_9HYPH (Amino acid ABC transporter permease n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A8I1P4H7_9HYPH)

HSP 1 Score: 145 bits (366), Expect = 1.840e-39
Identity = 77/115 (66.96%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:    4 IRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPR 348
            IRGGLQA+  GQ+EAA ALGL YW+ +AL+ LPQA+ L LPPIVSL I FFK TSLV  IGIFDL    Q+  G     GFGTEAYLF   IYF FCF+MSRYGLSLERRL R R
Sbjct:  262 IRGGLQAVDAGQSEAAHALGLSYWQKMALVVLPQALTLVLPPIVSLCIAFFKATSLVTIIGIFDLLNAGQRSVGEPAWQGFGTEAYLFVALIYFCFCFSMSRYGLSLERRLKRSR 376
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A4U6CDF3_9HYPH (Amino acid ABC transporter permease n=1 Tax=Aquamicrobium sp. LC103 TaxID=1120658 RepID=A0A4U6CDF3_9HYPH)

HSP 1 Score: 142 bits (357), Expect = 4.250e-38
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:    4 IRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPR 348
            IRGGLQA+  GQ EAA +LGLGYWR  AL+ +PQA+ + LPPIVSL I FFK+TSLVM IGIFDL   +++  G     GFG EAY+F  AIYF FCFAMSRYG  LE+RL R R
Sbjct:  266 IRGGLQAVPSGQYEAAKSLGLGYWRMTALVIMPQALTIVLPPIVSLCIAFFKHTSLVMIIGIFDLLNAAKRSIGEPAWQGFGAEAYIFVAAIYFAFCFAMSRYGQRLEKRLKRSR 380
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A7C9VII3_9HYPH (Amino acid ABC transporter permease n=1 Tax=Mesorhizobium zhangyense TaxID=1776730 RepID=A0A7C9VII3_9HYPH)

HSP 1 Score: 139 bits (351), Expect = 2.850e-37
Identity = 73/111 (65.77%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    4 IRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRL 336
            IRGGLQA+ +GQ EAA +LGLGYW+ + LI +PQA+ L LPPIVSL I FFK+TSLVM IGIFDL   +++        GFGTEAYLF   IYF FCFAMSRYG SLERRL
Sbjct:  259 IRGGLQAVDQGQWEAADSLGLGYWQKMGLIVVPQALRLVLPPIVSLCIAFFKSTSLVMIIGIFDLLNAAKRSVAEPAWQGFGTEAYLFVALIYFCFCFAMSRYGQSLERRL 369
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A2K9ZG39_RHILE (Amino-acid transporter subunit n=5 Tax=Rhizobium TaxID=379 RepID=A0A2K9ZG39_RHILE)

HSP 1 Score: 138 bits (348), Expect = 7.450e-37
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:    4 IRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPR 348
            IRGGLQA+  GQ+EAA +LGLGYW+T+  + +PQA+ L LPPI+SL IG FK+TSLVM IGIFDL    ++        GFG EAY+F GAIYF FCF+M+R+G  LE+RL R R
Sbjct:  256 IRGGLQAVPAGQSEAAQSLGLGYWKTMYFVVMPQALTLVLPPIISLCIGLFKSTSLVMIIGIFDLLNAGKRAIAEPAWQGFGAEAYIFVGAIYFAFCFSMARFGSGLEKRLRRDR 370
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A0S8B506_9PROT (Amino acid ABC transporter permease n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B506_9PROT)

HSP 1 Score: 134 bits (336), Expect = 4.630e-35
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1 
Query:    1 LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPRDFGPGGS 369
            ++RGGLQA+ RGQ EAA ALGL YW+ +  I LPQA+ +++PP+V+ FIGFFK+TSLV+ IG+FDL    +      +  GFG EAY+FA A+YF+FCFAMSRY  +LE  L   +  G  G+
Sbjct:  246 VVRGGLQAIPRGQYEAAQALGLSYWKMMGFIILPQALRISIPPLVNTFIGFFKDTSLVLIIGLFDLLTTVKVSLTEPKWTGFGVEAYIFASAVYFIFCFAMSRYSQALEASLGAAQSRGTNGA 368
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A7Y9IPW5_9BURK (General L-amino acid transport system permease protein n=2 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9IPW5_9BURK)

HSP 1 Score: 132 bits (331), Expect = 2.170e-34
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    1 LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARPRD 351
            L+RGGLQA+ +GQ E A A+GL YW+ + L+ LPQA+ + + P+VSLFIG FK+TSLV+ IGIFDLT+ ++         GF TEAY+F  AIYFVFC++MS+Y  +LERRL   RD
Sbjct:  249 LVRGGLQAIPKGQYEGADAIGLSYWQQMRLVVLPQALKVVIAPLVSLFIGVFKDTSLVVIIGIFDLTQSTKAALTDAAWPGFSTEAYVFVAAIYFVFCYSMSKYSQALERRLENRRD 365
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A536XV65_9PROT (Amino acid ABC transporter permease (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XV65_9PROT)

HSP 1 Score: 125 bits (315), Expect = 3.160e-34
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    1 LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERRLARP 345
            ++RGGLQA+ RGQ EAA A+GLGYW  +  + LPQA+ +A+PP+V+ F+GFFK+TSLV+ IG+FDL    +         G+G EAY FA  +YF+FC+AMSRY    ER++  P
Sbjct:   30 VVRGGLQAIPRGQYEAAAAIGLGYWGAMRAVILPQALRIAVPPLVNTFVGFFKDTSLVLIIGLFDLLSTIKVALTEPAWNGYGVEAYFFAALVYFIFCYAMSRYSRRFERQVPAP 144
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BLAST of jgi.p|Trimin1|182100 vs. uniprot
Match: A0A2U1CQK4_9BURK (Amino acid ABC transporter membrane protein 2 (PAAT family) n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2U1CQK4_9BURK)

HSP 1 Score: 131 bits (329), Expect = 3.890e-34
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    4 IRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIGFFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFAMSRYGLSLERR 333
            +RGGLQA+ +GQ E A +LGLGYWRT+  + LPQA+A+ + P+V +FI  FK+TSLVM IGIFDLT+ ++      +  GF TEAYLF G IYFVFCFA+SRY  +LER+
Sbjct:  244 VRGGLQAIPKGQYEGAASLGLGYWRTMGSVILPQALAIVVGPLVGIFISLFKDTSLVMIIGIFDLTQAAKAAIADPQWQGFSTEAYLFIGGIYFVFCFAISRYSRTLERQ 353
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182100 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDN5_9STRA7.240e-96100.00ABC transporter type 1, transmembrane domain MetI-... [more]
A0A521LJK9_9HYPH1.750e-5280.87Amino acid ABC transporter permease n=1 Tax=Bosea ... [more]
A0A8I1P4H7_9HYPH1.840e-3966.96Amino acid ABC transporter permease n=1 Tax=Hyphom... [more]
A0A4U6CDF3_9HYPH4.250e-3863.48Amino acid ABC transporter permease n=1 Tax=Aquami... [more]
A0A7C9VII3_9HYPH2.850e-3765.77Amino acid ABC transporter permease n=1 Tax=Mesorh... [more]
A0A2K9ZG39_RHILE7.450e-3759.13Amino-acid transporter subunit n=5 Tax=Rhizobium T... [more]
A0A0S8B506_9PROT4.630e-3552.85Amino acid ABC transporter permease n=1 Tax=Betapr... [more]
A0A7Y9IPW5_9BURK2.170e-3455.56General L-amino acid transport system permease pro... [more]
A0A536XV65_9PROT3.160e-3451.30Amino acid ABC transporter permease (Fragment) n=1... [more]
A0A2U1CQK4_9BURK3.890e-3458.18Amino acid ABC transporter membrane protein 2 (PAA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_353contigContig_353:12053..12481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182100|e_gw1.353.29.1
KEGG TC3.A.1.3.18,3.A.1.3.7,3.A.1.3.8
BRITEko00000,ko00001,ko00002,ko02000
KEGG ModuleM00232
KEGG Pathwayko02010,map02010
KEGG koko:K09971
Preferred nameaapM
DescriptionABC-type amino acid transport system permease component
COG categoryP
Max annot lvl28216|Betaproteobacteria
EggNOG OGsCOG0765@1|root,COG0765@2|Bacteria,1MV3I@1224|Proteobacteria,2VIXA@28216|Betaproteobacteria,3T32V@506|Alcaligenaceae
Evalue6.39e-35
Seed ortholog1231391.AMZF01000110_gene845
Hectar predicted targeting categorymitochondrion
TranscriptId182422
TrackFilteredModels1
ProteinId182100
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182100gene_18562Tribonema minus UTEX_B_3156 geneContig_353 12053..12481 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18562_1exon_18562_1Tribonema minus UTEX_B_3156 exonContig_353 12053..12481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18562CDS_18562Tribonema minus UTEX_B_3156 CDSContig_353 12053..12481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182100Trimin1|182100|e_gw1.353.29.1Tribonema minus UTEX_B_3156 polypeptideContig_353 12053..12481 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18562 ID=mRNA_18562|Name=jgi.p|Trimin1|182100|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_353:12053..12481- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGATCCGCGGGGGCCTCCAGGCACTGGGGCGCGGACAGACGGAGGCGGC
GACAGCGCTGGGGCTAGGCTACTGGAGAACCTTAGCCCTGATCCGTTTGC
CGCAGGCGATCGCCCTGGCGCTTCCGCCGATCGTCAGCCTCTTCATCGGC
TTTTTCAAGAACACGTCGCTGGTGATGACGATCGGCATCTTCGACCTGAC
TGAACGCAGCCAAAAGTGCCGTGGCCGAACCCGCGTGGCAGGGTTCGGAA
CGGAGGCCTATCTGTTCGCCGGCGCGATCTATTTCGTCTTCTGCTTCGCC
ATGTCGCGATATGGGCTCAGCCTGGAGAGGCGCCTCGCTCGGCCGCGTGA
TTTCGGTCCGGGCGGAAGTCGGCTCTATGCCGTCTTGCGCTGGCCGCGAG
CCGTTCCGTCAGCTTCGTCGCGGCCTTGA
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protein sequence of jgi.p|Trimin1|182100

>Trimin1|182100|e_gw1.353.29.1 ID=Trimin1|182100|e_gw1.353.29.1|Name=jgi.p|Trimin1|182100|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=143bp
LIRGGLQALGRGQTEAATALGLGYWRTLALIRLPQAIALALPPIVSLFIG
FFKNTSLVMTIGIFDLTERSQKCRGRTRVAGFGTEAYLFAGAIYFVFCFA
MSRYGLSLERRLARPRDFGPGGSRLYAVLRWPRAVPSASSRP*
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mRNA from alignment at Contig_353:12053..12481-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18562 ID=mRNA_18562|Name=jgi.p|Trimin1|182100|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_353:12053..12481- (Tribonema minus UTEX_B_3156 )
CTGATCCGCGGGGGCCTCCAGGCACTGGGGCGCGGACAGACGGAGGCGGC
GACAGCGCTGGGGCTAGGCTACTGGAGAACCTTAGCCCTGATCCGTTTGC
CGCAGGCGATCGCCCTGGCGCTTCCGCCGATCGTCAGCCTCTTCATCGGC
TTTTTCAAGAACACGTCGCTGGTGATGACGATCGGCATCTTCGACCTGAC
TGAACGCAGCCAAAAGTGCCGTGGCCGAACCCGCGTGGCAGGGTTCGGAA
CGGAGGCCTATCTGTTCGCCGGCGCGATCTATTTCGTCTTCTGCTTCGCC
ATGTCGCGATATGGGCTCAGCCTGGAGAGGCGCCTCGCTCGGCCGCGTGA
TTTCGGTCCGGGCGGAAGTCGGCTCTATGCCGTCTTGCGCTGGCCGCGAG
CCGTTCCGTCAGCTTCGTCGCGGCCTTGA
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Coding sequence (CDS) from alignment at Contig_353:12053..12481-

>mRNA_18562 ID=mRNA_18562|Name=jgi.p|Trimin1|182100|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=429bp|location=Sequence derived from alignment at Contig_353:12053..12481- (Tribonema minus UTEX_B_3156 )
CTGATCCGCGGGGGCCTCCAGGCACTGGGGCGCGGACAGACGGAGGCGGC
GACAGCGCTGGGGCTAGGCTACTGGAGAACCTTAGCCCTGATCCGTTTGC
CGCAGGCGATCGCCCTGGCGCTTCCGCCGATCGTCAGCCTCTTCATCGGC
TTTTTCAAGAACACGTCGCTGGTGATGACGATCGGCATCTTCGACCTGAC
TGAACGCAGCCAAAAGTGCCGTGGCCGAACCCGCGTGGCAGGGTTCGGAA
CGGAGGCCTATCTGTTCGCCGGCGCGATCTATTTCGTCTTCTGCTTCGCC
ATGTCGCGATATGGGCTCAGCCTGGAGAGGCGCCTCGCTCGGCCGCGTGA
TTTCGGTCCGGGCGGAAGTCGGCTCTATGCCGTCTTGCGCTGGCCGCGAG
CCGTTCCGTCAGCTTCGTCGCGGCCTTGA
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