mRNA_18560 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182095
Unique NamemRNA_18560
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A836CD06_9STRA (Endoribonuclease L-PSP n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD06_9STRA)

HSP 1 Score: 301 bits (772), Expect = 1.710e-103
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA 468
            MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA
Sbjct:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA 156
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A651G304_9HYPH (RidA family protein n=1 Tax=Salinarimonadaceae bacterium TaxID=2448058 RepID=A0A651G304_9HYPH)

HSP 1 Score: 214 bits (544), Expect = 9.550e-69
Identity = 104/153 (67.97%), Postives = 124/153 (81.05%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIF 459
            M  ++ RL E G+ LP AAAPVANYVP VR GDL+FISGQ+C G DGAI PAH+GKLG  VSE  GRAAARV  +N++AQL+ A+GD DRV RCVRL G+IN  PD+  +PQ+MNGASDLMV  FG+ GRHAR+T+GVAQLPLD+AVEVEG+F
Sbjct:    1 MGAIDSRLAELGIALPPAAAPVANYVPFVRAGDLVFISGQLCLGADGAIDPAHKGKLGAQVSEEAGRAAARVCAINLVAQLRAAIGDLDRVTRCVRLGGFINCTPDFGPVPQVMNGASDLMVEIFGDKGRHARSTIGVAQLPLDAAVEVEGVF 153
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: UPI00166750AF (RidA family protein n=2 Tax=Salinarimonas TaxID=690086 RepID=UPI00166750AF)

HSP 1 Score: 212 bits (539), Expect = 6.080e-68
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIF 459
            MS +E RL E GL LP AAAPVANYVP VR GDL+ ISGQIC G DG +APAH GKLG  VS  DG+AAAR+  LN+LAQLK AVGD D V RCVRL G+INA PD+ A+ Q+MNGASDLMV A GE GRHAR+T+GVA+LP+D+AVEVEG+F
Sbjct:    1 MSRIEDRLAEKGLSLPQAAAPVANYVPYVRTGDLVVISGQICLGSDGKLAPAHVGKLGGEVSMEDGQAAARLCALNLLAQLKAAVGDLDEVVRCVRLGGFINARPDFAAIAQVMNGASDLMVEAMGEAGRHARSTIGVAELPMDAAVEVEGMF 153
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A0P7X6T0_9HYPH (Putative translation initiation inhibitor, yjgF family n=1 Tax=Saliniramus fredricksonii TaxID=1653334 RepID=A0A0P7X6T0_9HYPH)

HSP 1 Score: 206 bits (523), Expect = 1.770e-65
Identity = 102/150 (68.00%), Postives = 120/150 (80.00%), Query Frame = 1 
Query:   10 VERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIF 459
            +E RL E G+ LP+ AAPVANYVP VR G+L+ ISGQIC G DG IAPAH+GKLGD V E  GRAAAR   +N+LAQL+ A+GD D V R VRL G+IN  PDY A+ Q+MNGASDLMV AFG+ GRHAR+T+GVAQLPLD+AVEVEG+F
Sbjct:    9 IEARLAEIGISLPTPAAPVANYVPFVRSGNLVIISGQICLGPDGKIAPAHQGKLGDVVDETAGRAAARACAINLLAQLRAAIGDLDAVTRVVRLGGFINCVPDYGAVAQVMNGASDLMVEAFGDVGRHARSTIGVAQLPLDAAVEVEGMF 158
[Close]
BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A4Q1KM55_9SPHN (RidA family protein n=1 Tax=Sphingobium fluviale TaxID=2506423 RepID=A0A4Q1KM55_9SPHN)

HSP 1 Score: 198 bits (503), Expect = 1.660e-62
Identity = 100/156 (64.10%), Postives = 118/156 (75.64%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA 468
            MS +E RL   G+ LP A AP ANYVPAVR G+L+ ISGQ+CFG DG +A  H+GKLG  +S+  G+ AAR+  LN++AQLK  VGD D + RCVRL G+INAAPDY  LP IMNGASDLMV  FGE GRHAR+TVGVA LP D AVEVEG+F +A
Sbjct:    1 MSLIEDRLTHLGITLPPAPAPAANYVPAVRTGNLVVISGQVCFGADGMLADRHKGKLGAGMSDEAGKEAARLCALNLIAQLKAVVGDLDTITRCVRLGGFINAAPDYTPLPAIMNGASDLMVEIFGEAGRHARSTVGVAVLPFDCAVEVEGMFEVA 156
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: UPI00166DB703 (RidA family protein n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI00166DB703)

HSP 1 Score: 197 bits (502), Expect = 2.360e-62
Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA 468
            MS++E +L + G+RLP+ AAP+ANY+P VR G L+ +SGQ+C G DG ++ AHRGKLG  VS  DG+AAAR+  +NVLAQ + A+GD D++ARCVRL G+INA P++ AL  +MNGASDLMV A G+ GRHAR+T+GVA+LPLD+AVEVE +F +A
Sbjct:    1 MSQIEAKLADVGIRLPTPAAPLANYLPCVRTGSLLIVSGQLCTGVDGKLSDAHRGKLGAEVSLEDGQAAARLCAINVLAQARAAIGDLDQIARCVRLGGFINALPNFSALAAVMNGASDLMVTALGDRGRHARSTIGVAELPLDAAVEVEAMFEIA 156
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A5B2VZ46_9HYPH (RidA family protein n=1 Tax=Salinarimonas soli TaxID=1638099 RepID=A0A5B2VZ46_9HYPH)

HSP 1 Score: 197 bits (500), Expect = 4.750e-62
Identity = 99/153 (64.71%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIF 459
            MS V+ +L E G+ LP AAAPVA+YVP VR G+LI ISGQIC G DG ++PAH GKLG  +S   GR AAR+  +N+LAQLK AVGD DRV RCVRL G+IN  P + A+ Q+MNGASDLMV   GE GRHAR+T+GVA+LPLD+AVEVEG+F
Sbjct:    1 MSAVDTKLAELGITLPKAAAPVADYVPFVRTGNLIVISGQICLGPDGKLSPAHTGKLGAEISPEAGREAARLCAINLLAQLKAAVGDLDRVVRCVRLGGFINVVPTFAAVAQVMNGASDLMVDVLGEAGRHARSTIGVAELPLDAAVEVEGMF 153
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A2U8VT31_9HYPH (YjgF_endoribonc domain-containing protein n=5 Tax=Methylobacteriaceae TaxID=119045 RepID=A0A2U8VT31_9HYPH)

HSP 1 Score: 195 bits (496), Expect = 1.990e-61
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDR-VARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAM 465
            MS ++ RL   GL LP AAAPVANYVP VR G+L+ ISGQICFG DG +AP H GKLGDTVS   G AAAR+  LNVLAQL+ AVGD DR V +CVRL G+INA P +  L  IMNGASDLMV   G+ GRHAR+TVGVA+LPLD+AVEVE +FA+
Sbjct:    1 MSSIKERLQALGLALPKAAAPVANYVPFVRTGNLVVISGQICFGPDGKLAPEHTGKLGDTVSNEAGIAAARLCALNVLAQLEAAVGDLDRAVDQCVRLGGFINAVPTFAGLAPIMNGASDLMVEVLGDRGRHARSTVGVAELPLDAAVEVEAMFAV 156
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BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A5N8AEE1_9SPHN (RidA family protein n=1 Tax=Sphingobium sp. TaxID=1912891 RepID=A0A5N8AEE1_9SPHN)

HSP 1 Score: 194 bits (492), Expect = 7.830e-61
Identity = 100/156 (64.10%), Postives = 119/156 (76.28%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA 468
            MS +E  L + G+ LP+  APVANYVP V+ G+LI+ISGQIC G  G IA AH+GKLG +VS+  GR AAR+  +N+LAQLK AVGDF  V RC+RL G+IN+ PDY AL  IMNGASDLMV   GE GRHAR+TVGVA+LPLD AVEVE IF +A
Sbjct:    1 MSMIEHNLTQLGITLPTPLAPVANYVPYVQSGNLIYISGQICAGAGGTIADAHKGKLGGSVSDEAGREAARLCVINILAQLKAAVGDFSNVKRCIRLGGFINSMPDYAALAPIMNGASDLMVEVMGEAGRHARSTVGVAELPLDCAVEVEAIFEVA 156
[Close]
BLAST of jgi.p|Trimin1|182095 vs. uniprot
Match: A0A1Q4C1V0_9HYPH (YjgF_endoribonc domain-containing protein n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4C1V0_9HYPH)

HSP 1 Score: 193 bits (491), Expect = 1.220e-60
Identity = 99/157 (63.06%), Postives = 128/157 (81.53%), Query Frame = 1 
Query:    1 MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIAPAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVG-DFDRVARCVRLCGYINAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVEGIFAMA 468
            MS++E  L +AG+ LP+ AAPVANYV AV  G+L+ ISGQ+C G +GA+  AH+GKLGDTVS   G+AAAR+  +N+LAQ KLA+G + DR+ RCVRL G+INA P Y+A+PQ+MNGASD+MV A G++GRHAR+TVGVAQLPL+ AVEVEG+F +A
Sbjct:    1 MSKIENNLKQAGIVLPTPAAPVANYVGAVICGNLLVISGQLCLGANGAVDSAHQGKLGDTVSLEVGQAAARLCAINLLAQAKLALGGNLDRLRRCVRLGGFINATPTYEAIPQVMNGASDMMVKAMGDSGRHARSTVGVAQLPLNCAVEVEGMFEIA 157
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182095 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CD06_9STRA1.710e-103100.00Endoribonuclease L-PSP n=1 Tax=Tribonema minus Tax... [more]
A0A651G304_9HYPH9.550e-6967.97RidA family protein n=1 Tax=Salinarimonadaceae bac... [more]
UPI00166750AF6.080e-6869.93RidA family protein n=2 Tax=Salinarimonas TaxID=69... [more]
A0A0P7X6T0_9HYPH1.770e-6568.00Putative translation initiation inhibitor, yjgF fa... [more]
A0A4Q1KM55_9SPHN1.660e-6264.10RidA family protein n=1 Tax=Sphingobium fluviale T... [more]
UPI00166DB7032.360e-6260.26RidA family protein n=1 Tax=Chelatococcus reniform... [more]
A0A5B2VZ46_9HYPH4.750e-6264.71RidA family protein n=1 Tax=Salinarimonas soli Tax... [more]
A0A2U8VT31_9HYPH1.990e-6166.67YjgF_endoribonc domain-containing protein n=5 Tax=... [more]
A0A5N8AEE1_9SPHN7.830e-6164.10RidA family protein n=1 Tax=Sphingobium sp. TaxID=... [more]
A0A1Q4C1V0_9HYPH1.220e-6063.06YjgF_endoribonc domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_353contigContig_353:6491..6961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182095|e_gw1.353.16.1
Preferred nameMA20_36205
Descriptionendoribonuclease L-PSP
COG categoryJ
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria,1RHMZ@1224|Proteobacteria,2U9H4@28211|Alphaproteobacteria,3JY5J@41294|Bradyrhizobiaceae
Evalue9.49e-67
Seed ortholog1123229.AUBC01000001_gene1844
Hectar predicted targeting categoryother localisation
TranscriptId182417
TrackFilteredModels1
ProteinId182095
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182095gene_18560Tribonema minus UTEX_B_3156 geneContig_353 6491..6961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18560_1exon_18560_1Tribonema minus UTEX_B_3156 exonContig_353 6491..6961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18560CDS_18560Tribonema minus UTEX_B_3156 CDSContig_353 6491..6961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182095Trimin1|182095|e_gw1.353.16.1Tribonema minus UTEX_B_3156 polypeptideContig_353 6491..6961 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18560 ID=mRNA_18560|Name=jgi.p|Trimin1|182095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_353:6491..6961- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAAGTCGAACGACGCCTGATAGAGGCAGGCCTGCGATTACCCTC
AGCCGCGGCACCGGTCGCCAACTATGTGCCGGCCGTTCGGGTCGGCGATC
TGATCTTCATTTCCGGCCAGATCTGCTTCGGGGAGGATGGCGCGATTGCG
CCTGCGCATCGCGGCAAGCTGGGCGATACGGTGTCCGAAGCCGACGGGCG
TGCCGCTGCAAGAGTGGCCGGCCTCAACGTGCTCGCCCAGTTAAAGCTGG
CGGTGGGCGATTTCGATCGCGTGGCACGCTGTGTCCGTCTCTGCGGCTAT
ATCAATGCAGCGCCGGACTACGATGCCTTGCCGCAGATTATGAACGGCGC
CTCCGACCTGATGGTTCTGGCTTTCGGAGAGACCGGCCGACACGCTCGCA
CGACGGTCGGCGTGGCTCAGTTGCCGCTGGACAGCGCTGTCGAAGTCGAA
GGGATCTTCGCCATGGCCTGA
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protein sequence of jgi.p|Trimin1|182095

>Trimin1|182095|e_gw1.353.16.1 ID=Trimin1|182095|e_gw1.353.16.1|Name=jgi.p|Trimin1|182095|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
MSEVERRLIEAGLRLPSAAAPVANYVPAVRVGDLIFISGQICFGEDGAIA
PAHRGKLGDTVSEADGRAAARVAGLNVLAQLKLAVGDFDRVARCVRLCGY
INAAPDYDALPQIMNGASDLMVLAFGETGRHARTTVGVAQLPLDSAVEVE
GIFAMA*
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mRNA from alignment at Contig_353:6491..6961-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18560 ID=mRNA_18560|Name=jgi.p|Trimin1|182095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_353:6491..6961- (Tribonema minus UTEX_B_3156 )
ATGAGCGAAGTCGAACGACGCCTGATAGAGGCAGGCCTGCGATTACCCTC
AGCCGCGGCACCGGTCGCCAACTATGTGCCGGCCGTTCGGGTCGGCGATC
TGATCTTCATTTCCGGCCAGATCTGCTTCGGGGAGGATGGCGCGATTGCG
CCTGCGCATCGCGGCAAGCTGGGCGATACGGTGTCCGAAGCCGACGGGCG
TGCCGCTGCAAGAGTGGCCGGCCTCAACGTGCTCGCCCAGTTAAAGCTGG
CGGTGGGCGATTTCGATCGCGTGGCACGCTGTGTCCGTCTCTGCGGCTAT
ATCAATGCAGCGCCGGACTACGATGCCTTGCCGCAGATTATGAACGGCGC
CTCCGACCTGATGGTTCTGGCTTTCGGAGAGACCGGCCGACACGCTCGCA
CGACGGTCGGCGTGGCTCAGTTGCCGCTGGACAGCGCTGTCGAAGTCGAA
GGGATCTTCGCCATGGCCTGA
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Coding sequence (CDS) from alignment at Contig_353:6491..6961-

>mRNA_18560 ID=mRNA_18560|Name=jgi.p|Trimin1|182095|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_353:6491..6961- (Tribonema minus UTEX_B_3156 )
ATGAGCGAAGTCGAACGACGCCTGATAGAGGCAGGCCTGCGATTACCCTC
AGCCGCGGCACCGGTCGCCAACTATGTGCCGGCCGTTCGGGTCGGCGATC
TGATCTTCATTTCCGGCCAGATCTGCTTCGGGGAGGATGGCGCGATTGCG
CCTGCGCATCGCGGCAAGCTGGGCGATACGGTGTCCGAAGCCGACGGGCG
TGCCGCTGCAAGAGTGGCCGGCCTCAACGTGCTCGCCCAGTTAAAGCTGG
CGGTGGGCGATTTCGATCGCGTGGCACGCTGTGTCCGTCTCTGCGGCTAT
ATCAATGCAGCGCCGGACTACGATGCCTTGCCGCAGATTATGAACGGCGC
CTCCGACCTGATGGTTCTGGCTTTCGGAGAGACCGGCCGACACGCTCGCA
CGACGGTCGGCGTGGCTCAGTTGCCGCTGGACAGCGCTGTCGAAGTCGAA
GGGATCTTCGCCATGGCCTGA
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