mRNA_1849 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A836CG49_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG49_9STRA) HSP 1 Score: 209 bits (533), Expect = 6.270e-69 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 Query: 1 HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI 294 HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI Sbjct: 1 HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI 98
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S3H7N4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7N4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.390e-18 Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1 Query: 28 QRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGD-AFSYSHPHFKRGQDAGVARI 294 Q FP K++QILE ESPDII WNE+G +F I D F R+++PKYFRH+ + S QRQ N Y F + G+ S+ HP F+RG V ++ Sbjct: 5 QSFPAKIYQILENESPDIIQWNENGVSFRIVDHGRFEREIVPKYFRHNQISSVQRQLNLYGFKCISRGEFKRSFFHPKFRRGDWETVRKL 94
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S2GI51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GI51_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.040e-17 Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 Query: 34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKRGQDAGVARI 294 FP KL+ ++ ES +I W +HG +F+I+D++ F VLPKYFRH+ + SFQRQ N Y F T G D+ +Y HP F+R A V I Sbjct: 5 FPRKLYDLINNESDALIEWAKHGQSFMIRDQDLFCSQVLPKYFRHTKLTSFQRQLNLYGFRRITKGPDSGAYYHPKFRRDSPAQVETI 92
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A812YT23_SYMMI (HSF2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YT23_SYMMI) HSP 1 Score: 83.2 bits (204), Expect = 7.120e-17 Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 25 DQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKRGQDAGVARI 294 + FP KL ++E E D++ W E G +F + D E FA +V+PKYFRH+ + SFQRQ N Y F T G D SY HP F+RG+ ++ I Sbjct: 10 NSNFPQKLFALMEMEPADVVCWTERGLSFRVVDPEKFAEEVVPKYFRHTKMTSFQRQLNLYGFRRVTKGEDTGSYYHPKFQRGRRDFISEI 100
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S1TT16_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT16_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 7.320e-17 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 22 GDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGD-AFSYSHPHFKR 267 G+ FP KL + E +I W HG+AF I D ++F VLPKYFRH+N+ SFQRQ N Y F T GD +Y HPHF+R Sbjct: 35 GNASFPEKLRMLFAEEPTSVIDWLPHGEAFAIHDCDAFVAKVLPKYFRHNNLTSFQRQLNLYGFRRITKGDDKGAYRHPHFQR 117
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7R9YC38_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC38_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 9.340e-17 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFG-YRTIGDAFSYSHPHFKRGQ 273 F KL ++LE ESP+I+TW GD+F+I D++ FA +VLPKYFR + SFQRQ N YNF + D Y++P F+RGQ Sbjct: 87 FLEKLVKMLEEESPEIVTWTSQGDSFVICDQQRFANEVLPKYFRSAKWNSFQRQLNLYNFYVHNKTFDRLVYANPLFRRGQ 167
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S4N6Q9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N6Q9_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.600e-16 Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKR 267 FP KL ++L +E P +++W GDAF+++D + F DVLP+YFRH+ + SFQRQ N Y F T G DA +Y H +F R Sbjct: 524 FPRKLMEMLRKEDPAVVSWLPKGDAFLVRDADKFVMDVLPRYFRHTKLTSFQRQLNLYGFRRITKGPDAGAYRHENFHR 602
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S2R0W2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0W2_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 7.790e-16 Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKR 267 FP KL ++L +E P I+ W GDAF ++D + F D+LP+YFRH+ + SFQRQ N Y F T G D +Y H F R Sbjct: 33 FPRKLMEMLRKEDPAIVCWLPRGDAFTVRDADKFINDILPRYFRHTKLTSFQRQLNLYGFRRITKGPDVGAYRHEWFNR 111
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A2D4C3T2_PYTIN (HSF_DOMAIN domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3T2_PYTIN) HSP 1 Score: 77.8 bits (190), Expect = 1.940e-15 Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 22 GDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGY--RTIGDAFSYSHPHFKRGQ 273 G +F L Q+LE E +I W+ G AF I+ E AR+VLPKYF+H+ V SFQRQ NY+ F +T + ++SHPHF RG+ Sbjct: 69 GVPKFLRFLFQMLEYEDRSVICWSHKGTAFQIRQPEELARNVLPKYFKHNKVSSFQRQLNYFGFKKWTKTQTNICTFSHPHFIRGE 154
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A0D3DI34_BRAOL (HSF_DOMAIN domain-containing protein n=7 Tax=Brassica TaxID=3705 RepID=A0A0D3DI34_BRAOL) HSP 1 Score: 78.6 bits (192), Expect = 1.950e-15 Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = 1 Query: 34 FPIKLHQILERESPD-IITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI 294 F K +Q+++ S D +++WNE G AF++ + FA+D+LPKYF+H+N SF RQ N Y F +T+ D + +++ HF+RGQ+ ++ I Sbjct: 12 FLSKTYQLVDDHSTDGVVSWNEDGTAFVVWETAEFAKDLLPKYFKHNNFSSFIRQLNTYGFR-KTVPDKWEFANDHFRRGQEDLLSEI 98 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1849 ID=mRNA_1849|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_26:303635..304050- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CACGTACCTGCTGTCGCACAGGGTGATCAAAGATTTCCAATCAAGCTGCAback to top protein sequence of jgi.p|Trimin1|151258 >Trimin1|151258|gw1.26.210.1 ID=Trimin1|151258|gw1.26.210.1|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLback to top mRNA from alignment at Contig_26:303635..304050- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1849 ID=mRNA_1849|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=416bp|location=Sequence derived from alignment at Contig_26:303635..304050- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:303635..304050- >mRNA_1849 ID=mRNA_1849|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_26:303635..304050- (Tribonema minus UTEX_B_3156 )back to top |