mRNA_1849 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151258
Unique NamemRNA_1849
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A836CG49_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG49_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.270e-69
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI 294
            HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI
Sbjct:    1 HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI 98          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S3H7N4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7N4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.390e-18
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 QRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGD-AFSYSHPHFKRGQDAGVARI 294
            Q FP K++QILE ESPDII WNE+G +F I D   F R+++PKYFRH+ + S QRQ N Y F   + G+   S+ HP F+RG    V ++
Sbjct:    5 QSFPAKIYQILENESPDIIQWNENGVSFRIVDHGRFEREIVPKYFRHNQISSVQRQLNLYGFKCISRGEFKRSFFHPKFRRGDWETVRKL 94          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S2GI51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GI51_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.040e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKRGQDAGVARI 294
            FP KL+ ++  ES  +I W +HG +F+I+D++ F   VLPKYFRH+ + SFQRQ N Y F   T G D+ +Y HP F+R   A V  I
Sbjct:    5 FPRKLYDLINNESDALIEWAKHGQSFMIRDQDLFCSQVLPKYFRHTKLTSFQRQLNLYGFRRITKGPDSGAYYHPKFRRDSPAQVETI 92          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A812YT23_SYMMI (HSF2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YT23_SYMMI)

HSP 1 Score: 83.2 bits (204), Expect = 7.120e-17
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   25 DQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKRGQDAGVARI 294
            +  FP KL  ++E E  D++ W E G +F + D E FA +V+PKYFRH+ + SFQRQ N Y F   T G D  SY HP F+RG+   ++ I
Sbjct:   10 NSNFPQKLFALMEMEPADVVCWTERGLSFRVVDPEKFAEEVVPKYFRHTKMTSFQRQLNLYGFRRVTKGEDTGSYYHPKFQRGRRDFISEI 100          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S1TT16_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT16_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.320e-17
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   22 GDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGD-AFSYSHPHFKR 267
            G+  FP KL  +   E   +I W  HG+AF I D ++F   VLPKYFRH+N+ SFQRQ N Y F   T GD   +Y HPHF+R
Sbjct:   35 GNASFPEKLRMLFAEEPTSVIDWLPHGEAFAIHDCDAFVAKVLPKYFRHNNLTSFQRQLNLYGFRRITKGDDKGAYRHPHFQR 117          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7R9YC38_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC38_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.340e-17
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFG-YRTIGDAFSYSHPHFKRGQ 273
            F  KL ++LE ESP+I+TW   GD+F+I D++ FA +VLPKYFR +   SFQRQ N YNF  +    D   Y++P F+RGQ
Sbjct:   87 FLEKLVKMLEEESPEIVTWTSQGDSFVICDQQRFANEVLPKYFRSAKWNSFQRQLNLYNFYVHNKTFDRLVYANPLFRRGQ 167          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S4N6Q9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N6Q9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.600e-16
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKR 267
            FP KL ++L +E P +++W   GDAF+++D + F  DVLP+YFRH+ + SFQRQ N Y F   T G DA +Y H +F R
Sbjct:  524 FPRKLMEMLRKEDPAVVSWLPKGDAFLVRDADKFVMDVLPRYFRHTKLTSFQRQLNLYGFRRITKGPDAGAYRHENFHR 602          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A7S2R0W2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0W2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.790e-16
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   34 FPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIG-DAFSYSHPHFKR 267
            FP KL ++L +E P I+ W   GDAF ++D + F  D+LP+YFRH+ + SFQRQ N Y F   T G D  +Y H  F R
Sbjct:   33 FPRKLMEMLRKEDPAIVCWLPRGDAFTVRDADKFINDILPRYFRHTKLTSFQRQLNLYGFRRITKGPDVGAYRHEWFNR 111          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A2D4C3T2_PYTIN (HSF_DOMAIN domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3T2_PYTIN)

HSP 1 Score: 77.8 bits (190), Expect = 1.940e-15
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   22 GDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGY--RTIGDAFSYSHPHFKRGQ 273
            G  +F   L Q+LE E   +I W+  G AF I+  E  AR+VLPKYF+H+ V SFQRQ NY+ F    +T  +  ++SHPHF RG+
Sbjct:   69 GVPKFLRFLFQMLEYEDRSVICWSHKGTAFQIRQPEELARNVLPKYFKHNKVSSFQRQLNYFGFKKWTKTQTNICTFSHPHFIRGE 154          
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Match: A0A0D3DI34_BRAOL (HSF_DOMAIN domain-containing protein n=7 Tax=Brassica TaxID=3705 RepID=A0A0D3DI34_BRAOL)

HSP 1 Score: 78.6 bits (192), Expect = 1.950e-15
Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   34 FPIKLHQILERESPD-IITWNEHGDAFIIKDEESFARDVLPKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI 294
            F  K +Q+++  S D +++WNE G AF++ +   FA+D+LPKYF+H+N  SF RQ N Y F  +T+ D + +++ HF+RGQ+  ++ I
Sbjct:   12 FLSKTYQLVDDHSTDGVVSWNEDGTAFVVWETAEFAKDLLPKYFKHNNFSSFIRQLNTYGFR-KTVPDKWEFANDHFRRGQEDLLSEI 98          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG49_9STRA6.270e-69100.00HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A7S3H7N4_9STRA1.390e-1848.89Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2GI51_9STRA3.040e-1746.59Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A812YT23_SYMMI7.120e-1745.05HSF2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S1TT16_9STRA7.320e-1749.40Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YC38_9STRA9.340e-1750.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4N6Q9_9STRA5.600e-1648.10Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2R0W2_9STRA7.790e-1646.84Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A2D4C3T2_PYTIN1.940e-1546.51HSF_DOMAIN domain-containing protein n=2 Tax=Pythi... [more]
A0A0D3DI34_BRAOL1.950e-1540.91HSF_DOMAIN domain-containing protein n=7 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:303635..304050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151258|gw1.26.210.1
GOsGO:0000122,GO:0000128,GO:0000228,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001085,GO:0001103,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009268,GO:0009405,GO:0009607,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016458,GO:0019219,GO:0019222,GO:0030308,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036244,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043900,GO:0043901,GO:0044182,GO:0044212,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0060256,GO:0060257,GO:0060258,GO:0065007,GO:0070013,GO:0070491,GO:0070784,GO:0070785,GO:0070887,GO:0071214,GO:0071467,GO:0080090,GO:0097159,GO:0098630,GO:0098743,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1900460,GO:1900462,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000217,GO:2000218,GO:2000220,GO:2000221,GO:2001141
Preferred nameSFL1
Descriptionsequence-specific DNA binding
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota
Evalue3.68e-16
Seed ortholog2850.Phatr49136
Hectar predicted targeting categoryother localisation
TranscriptId151580
TrackFilteredModels1
ProteinId151258
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151258gene_1849Tribonema minus UTEX_B_3156 geneContig_26 303635..304050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151258Trimin1|151258|gw1.26.210.1Tribonema minus UTEX_B_3156 polypeptideContig_26 303635..304050 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1849_2exon_1849_2Tribonema minus UTEX_B_3156 exonContig_26 303635..303762 -
exon_1849_1exon_1849_1Tribonema minus UTEX_B_3156 exonContig_26 303885..304050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1849CDS_1849Tribonema minus UTEX_B_3156 CDSContig_26 303885..304050 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1849 ID=mRNA_1849|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_26:303635..304050- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGTACCTGCTGTCGCACAGGGTGATCAAAGATTTCCAATCAAGCTGCA
TCAAATCTTGGAGAGGGAGAGTCCAGACATCATCACCTGGAACGAGCACG
GCGACGCGTTCATCATCAAGGACGAAGAGAGCTTCGCGCGTGACGTGTTG
CCGAAGTACTTTCGACATTCTAATGTCAAGAGCTTCCAGCGGCAGTGCAA
CTACTACAACTTCGGGTATCGTACTATCGGCGACGCTTTCAGCTACTCCC
ATCCACACTTCAAGCGCGGTCAAGATGCTGGTGTTGCCAGAATC
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protein sequence of jgi.p|Trimin1|151258

>Trimin1|151258|gw1.26.210.1 ID=Trimin1|151258|gw1.26.210.1|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
HVPAVAQGDQRFPIKLHQILERESPDIITWNEHGDAFIIKDEESFARDVL
PKYFRHSNVKSFQRQCNYYNFGYRTIGDAFSYSHPHFKRGQDAGVARI
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mRNA from alignment at Contig_26:303635..304050-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1849 ID=mRNA_1849|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=416bp|location=Sequence derived from alignment at Contig_26:303635..304050- (Tribonema minus UTEX_B_3156 )
CACGTACCTGCTGTCGCACAGGGTGATCAAAGATTTCCAATCAAGCTGCA TCAAATCTTGGAGAGGGAGAGTCCAGACATCATCACCTGGAACGAGCACG GCGACGCGTTCATCATCAAGGACGAAGAGAGCTTCGCGCGTGACGTGTTG CCGAAGTACTTTCGACGTGAGTGCGCAGCATCAGTGCCTCGATAAGCATG TACATCACATCTCAGCAGCAAGTGCAGATGCTTGACTCCCTAGTTACACC TACGATTACTGACAGCGGCCTGCATTGGTTGTCCGCAGATTCTAATGTCA AGAGCTTCCAGCGGCAGTGCAACTACTACAACTTCGGGTATCGTACTATC GGCGACGCTTTCAGCTACTCCCATCCACACTTCAAGCGCGGTCAAGATGC TGGTGTTGCCAGAATC
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Coding sequence (CDS) from alignment at Contig_26:303635..304050-

>mRNA_1849 ID=mRNA_1849|Name=jgi.p|Trimin1|151258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_26:303635..304050- (Tribonema minus UTEX_B_3156 )
CACGTACCTGCTGTCGCACAGGGTGATCAAAGATTTCCAATCAAGCTGCA
TCAAATCTTGGAGAGGGAGAGTCCAGACATCATCACCTGGAACGAGCACG
GCGACGCGTTCATCATCAAGGACGAAGAGAGCTTCGCGCGTGACGTGTTG
CCGAAGTACTTTCGACATTCTAATGTCAAGAGCTTCCAGCGGCAGTGCAA
CTACTACAACTTCGGGTATCGTACTATCGGCGACGCTTTCAGCTACTCCC
ATCCACACTTCAAGCGCGGTCAAGATGCTGGTGTTGCCAGAATC
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