mRNA_1845 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163570
Unique NamemRNA_1845
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A835Z671_9STRA (Histidine kinase-like ATPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z671_9STRA)

HSP 1 Score: 471 bits (1211), Expect = 8.830e-168
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1
Query:    1 MAVLDGARANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIPA 708
            MAVLDGARANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIPA
Sbjct:    1 MAVLDGARANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIPA 236          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A836CM12_9STRA (Histidine kinase-like ATPase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM12_9STRA)

HSP 1 Score: 311 bits (796), Expect = 6.540e-105
Identity = 149/209 (71.29%), Postives = 178/209 (85.17%), Query Frame = 1
Query:   28 NSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTV 654
            N MLSYVNH+VRNPLNVIKGMV+ T+LTL QC LPPEL TC+ DLT+ASRACDFLEHIVS ILV+QR EAGAL+LNL P+R+SDIV DM+ A+ HKMEE K V L+++CP DIT VVD F LKQ+LLN LSN+MKYT  G+IT+ V +H+ GE+TIGV DTG+GIP++ +KLIF+AHVQL+A+D+GRHG HGLGLYLVSMLA  M WTV
Sbjct:    1 NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTV 209          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A6N1NHF0_9VIRU (Histidine kinase n=1 Tax=Tupanvirus deep ocean TaxID=2126984 RepID=A0A6N1NHF0_9VIRU)

HSP 1 Score: 184 bits (466), Expect = 1.310e-50
Identity = 99/236 (41.95%), Postives = 144/236 (61.02%), Query Frame = 1
Query:   25 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQ---------CALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIP 705
            A  ML YVNHE+RNPLNVIKG+VE+TL  + +         C       T V+DL+  S +C+ LEHIV+DIL + +L++G L L+    ++   V D+ + +  K++EK+ + L +    D+    D + +KQILLNFL+N++KYT +GSIT+++ + + G     V DTG GI +  +  IFQ   Q + +D  R+G  GLGLYL  ML +RM   +GF ST GVGS FW+  P
Sbjct:  396 ATQMLGYVNHEIRNPLNVIKGLVEFTLHNMNKLDENKLDRICMDKMFYDTIVSDLSTVSGSCNMLEHIVTDILDINKLDSGKLELDNKWVKIRSFVNDISKTISQKIDEKQTIKLDVVYEHDLVLYFDIYRMKQILLNFLTNAVKYTLKGSITIKIEELN-GNYRFSVTDTGRGIKDEAKFRIFQPFNQTNPEDASRYGGIGLGLYLCKMLTERMGGKIGFESTYGVGSTFWVDFP 630          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A6N1NZN1_9VIRU (Histidine kinase n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1NZN1_9VIRU)

HSP 1 Score: 176 bits (446), Expect = 9.430e-48
Identity = 95/236 (40.25%), Postives = 141/236 (59.75%), Query Frame = 1
Query:   25 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQ---------CALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIP 705
            A  ML YVNHE+RNPLNVIKG+VE+TL  + +         C       T V+DL+  S +C+ LEHIV+DIL + +L++G L L+    ++   + D+ + +  K++EK+ + L +    D+    D + +KQILLNFL+N++KYT +G I +++ + + G     V DTG GI +  +  IFQ   Q + +D  R+G  GLGLYL  ML +RM   +GF ST  VGS FW+  P
Sbjct:  396 ATQMLGYVNHEIRNPLNVIKGLVEFTLHNISKLDQNKVDRICMDKMFYDTIVSDLSTVSGSCNMLEHIVTDILDINKLDSGKLELDNKWVKIRTFMNDISKTISQKIDEKQTIKLEVIYEYDLVLYFDIYRMKQILLNFLTNAVKYTIKGKIIIKIEELN-GNYRFSVTDTGRGIKDDAKSRIFQPFNQTNPEDSSRYGGIGLGLYLCKMLTERMGGKIGFESTFEVGSTFWVDFP 630          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A3G4ZXL8_9VIRU (Histidine kinase n=1 Tax=Edafosvirus sp. TaxID=2487765 RepID=A0A3G4ZXL8_9VIRU)

HSP 1 Score: 158 bits (399), Expect = 3.930e-41
Identity = 93/241 (38.59%), Postives = 136/241 (56.43%), Query Frame = 1
Query:   25 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCA-----------LPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDI---TAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIP 705
            AN ML YVNHE+RNPLNVI GMV+ T+ TL                  EL + ++DL  A  +C+ L HIV+D+L +++LE   LV++     +    + + + +  K+ EK +V   +E   ++      +D   L QILLN + NS+K+T  G+I +++ K++S  I   V DTG GIP+  +  IFQ   Q D +D  R+G  GLGLYL +ML   M  T+ F S  G+GS FWI +P
Sbjct:  378 ANKMLGYVNHEIRNPLNVINGMVDITIETLNNKIEKNTGGTNVQIQKDELSSVISDLYTAEGSCNMLRHIVNDVLDIRKLEDDKLVIDNEYINLDLFCKSIHKTIIPKLREKIDVSFSMEFKDNLENENIYIDKNRLSQILLNLIFNSIKFTIVGNIILKIRKNNSN-IIFEVNDTGRGIPDEAKSYIFQPFHQADKEDSSRYGGIGLGLYLCNMLVNCMGGTINFESKFGIGSSFWIEVP 617          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: UPI001559572C (response regulator n=1 Tax=Bowmanella denitrificans TaxID=366582 RepID=UPI001559572C)

HSP 1 Score: 133 bits (335), Expect = 5.080e-32
Identity = 77/231 (33.33%), Postives = 132/231 (57.14%), Query Frame = 1
Query:   19 ARANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDI--TAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIP 705
            A  ++ L+ ++HE+R P+N + GM++     + Q +L  +    ++    AS++   L  +++D+L   ++EAG + ++LHP  +  ++ ++   V    + K +V L+ +  T++  + +VD+  LKQ+L+N +SN++K+T  G++TV V +  +GEI  GV DTG GI E  QK IFQ+  Q D     R G  GLGL +   L   M   + F S  G GSHFW ++P
Sbjct:  755 AAKSNFLANMSHEIRTPMNAVIGMLQL----INQTSLTDKQQDYLSKAQSASKS---LLQLLNDVLDYSKIEAGKIDIDLHPADLESLIRELT-VVFSGSQMKNSVELLYDIDTNLPKSVLVDSLRLKQVLINLVSNALKFTMAGTVTVVVKRQSNGEIQFGVKDTGIGITEAQQKKIFQSFSQADPSTARRFGGSGLGLVISRRLTNLMGGELQFTSEEGEGSHFWFSLP 977          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A349TZ44_9PROT (Histidine kinase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349TZ44_9PROT)

HSP 1 Score: 132 bits (331), Expect = 1.390e-31
Identity = 80/230 (34.78%), Postives = 128/230 (55.65%), Query Frame = 1
Query:   37 LSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVV--DAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGE------ITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITI 702
            L+ ++HE+R PLN I G+V   L T       P       +L     + D L  IV+DIL + +++AG + L + P     +   + + ++ +  EKK + + ++C   I ++V  DA  ++QILLNFLSN++K+T++GS+ + + + +SG       +   V DTG GIPE HQK +F  + Q DA   G++G  GLGL +   L   M+  +G  ST G+GS FWI +
Sbjct:  227 LAMMSHEIRTPLNGILGIVAMLLDT-------PSTPEQKENLETIKYSGDALLTIVNDILDISKIDAGKMELEIAPFSPEKLAGSIAQLMQSRAREKK-IEISVQCAPGIPSIVKGDASRIRQILLNFLSNAIKFTEEGSVGIFMDRLESGSTHKNARLRFAVRDTGIGIPEAHQKKLFSEYNQADASISGKYGGTGLGLAISKKLVMAMDGEIGLDSTPGMGSTFWIIV 448          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A257PRE8_9PROT (Histidine kinase (Fragment) n=1 Tax=Rhodospirillales bacterium 20-64-7 TaxID=1970566 RepID=A0A257PRE8_9PROT)

HSP 1 Score: 129 bits (323), Expect = 5.290e-31
Identity = 85/239 (35.56%), Postives = 124/239 (51.88%), Query Frame = 1
Query:    4 AVLDGARANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVV--DAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGV----LDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITI 702
            A    A  +  L+ ++HE+R PLN + GM+E   +T     L P L   V     A+++   L  +V DIL L R+EAG L L   P  +  I+ D+R     +    K++ L+     D+  VV  D   L+QIL N + N++K+T +G++TVR +     E TI V     DTG G+P   Q +IF A  Q D+    R+G  GLGL +   L   M+  +G  STVG+GS FW T+
Sbjct:   93 AETSNAAKSQFLANMSHEIRTPLNGVVGMIELMQMT----ELTPSLQRHVE---TAAQSSQSLLRLVDDILDLSRIEAGRLQLVAVPFHLPSILHDVRLLFTEQAR-TKSLTLLTAITQDMNTVVAGDKHRLQQILTNLVGNAIKFTPEGTVTVRCSGQPEDEKTIRVRFEVTDTGIGVPAERQAVIFDAFAQADSSMTRRYGGTGLGLSIARQLVHMMDGDIGVQSTVGIGSTFWFTV 323          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A1S7LGA7_MAGMO (Histidine kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LGA7_MAGMO)

HSP 1 Score: 129 bits (324), Expect = 1.410e-30
Identity = 81/234 (34.62%), Postives = 131/234 (55.98%), Query Frame = 1
Query:   28 NSMLSYVNHEVRNPLNVIKGMVEY---TLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKK-NVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVT-KHDSGE---ITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIP 705
            +  L+ ++HE+R P+N I GM E    T LT++Q             L V   + + L  I++DIL + R+EAG LV++  P  +  IV+D  E +R + +EK  N ++ ++       + DA  ++QIL+NFL N++K+T+ G+I   VT +HD  +   +T  V+DTG G+P+++Q+ IF A  Q+D+    RHG  GLGL +   L   M+  +   S  G+GS F   +P
Sbjct:  411 SEFLATMSHEIRTPMNAILGMTELLGETELTVDQRNY----------LAVCRSSGENLLQIINDILDISRVEAGRLVVHAKPFNLRRIVKDAGEVIRFRSQEKGLNQLVSVDSNVPQWFIGDAARIRQILINFLGNAVKFTESGTIATLVTCEHDKADRYAVTFRVVDTGVGVPKSYQEHIFNAFQQVDSSSHRRHGGTGLGLAICQKLVDLMDGYISLKSDEGIGSAFSFVLP 634          
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Match: A0A271JCF5_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271JCF5_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.830e-30
Identity = 86/238 (36.13%), Postives = 132/238 (55.46%), Query Frame = 1
Query:   10 LDGARANS-MLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFG--LKQILLNFLSNSMKYTDQGSITVRV---TKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIP 705
            L  ARA S  L+ ++HE+R PLN + GM +    T    AL  +    V  +  + RA   L  +++D+L   ++EAG L L   P  +  + +D   AV  +   +K V ++     D+ AVV A G  L+Q++LN LSN++K+T+ G +T+R+   T+    ++TI V DTG GIPE +Q L+F++  Q+DA    R G  GLGL +   L ++M   V   S VG GS F +T+P
Sbjct:  179 LAAARAKSEFLAAMSHEIRTPLNGVIGMTDVLATT----ALSSDQRDYVHTIQASGRA---LLGVINDVLDFSKIEAGRLDLEAEPVALRALADDA-VAVVAQAATQKGVEVVCHVEPDVPAVVLADGARLRQVVLNLLSNAVKFTEAGGVTLRLDARTRRGLTDLTIRVSDTGIGIPEAYQPLLFESFTQVDASTTRRFGGTGLGLAISKRLVEQMGGAVQVESAVGAGSAFTVTVP 408          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163570 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z671_9STRA8.830e-168100.00Histidine kinase-like ATPase n=2 Tax=Tribonema min... [more]
A0A836CM12_9STRA6.540e-10571.29Histidine kinase-like ATPase (Fragment) n=1 Tax=Tr... [more]
A0A6N1NHF0_9VIRU1.310e-5041.95Histidine kinase n=1 Tax=Tupanvirus deep ocean Tax... [more]
A0A6N1NZN1_9VIRU9.430e-4840.25Histidine kinase n=1 Tax=Tupanvirus soda lake TaxI... [more]
A0A3G4ZXL8_9VIRU3.930e-4138.59Histidine kinase n=1 Tax=Edafosvirus sp. TaxID=248... [more]
UPI001559572C5.080e-3233.33response regulator n=1 Tax=Bowmanella denitrifican... [more]
A0A349TZ44_9PROT1.390e-3134.78Histidine kinase n=2 Tax=Alphaproteobacteria TaxID... [more]
A0A257PRE8_9PROT5.290e-3135.56Histidine kinase (Fragment) n=1 Tax=Rhodospirillal... [more]
A0A1S7LGA7_MAGMO1.410e-3034.62Histidine kinase n=1 Tax=Magnetococcus massalia (s... [more]
A0A271JCF5_9BACT1.830e-3036.13Uncharacterized protein n=2 Tax=Bacteroidetes/Chlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:293100..293810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163570|e_gw1.26.9.1
DescriptionPAS fold
COG categoryT
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG5002@1|root,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2TWD2@28211|Alphaproteobacteria,43RR9@69277|Phyllobacteriaceae
Evalue1.47e-32
Seed ortholog1116369.KB890024_gene4083
Hectar predicted targeting categoryother localisation
TranscriptId163892
TrackFilteredModels1
ProteinId163570
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163570gene_1845Tribonema minus UTEX_B_3156 geneContig_26 293100..293810 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1845_1exon_1845_1Tribonema minus UTEX_B_3156 exonContig_26 293100..293810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1845CDS_1845Tribonema minus UTEX_B_3156 CDSContig_26 293100..293810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163570Trimin1|163570|e_gw1.26.9.1Tribonema minus UTEX_B_3156 polypeptideContig_26 293100..293810 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1845 ID=mRNA_1845|Name=jgi.p|Trimin1|163570|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_26:293100..293810+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGCTGGATGGAGCGCGTGCAAACTCTATGCTTTCGTATGTAAA
TCACGAAGTCCGCAATCCGCTAAATGTGATCAAGGGAATGGTGGAATACA
CATTGTTGACGCTAGAGCAGTGCGCACTCCCCCCTGAGCTAGGTACATGC
GTGGCAGACCTTACGGTTGCCTCCAGAGCATGCGACTTTCTAGAACACAT
TGTCAGTGACATTCTCGTCTTACAAAGACTGGAGGCCGGAGCTCTCGTGC
TCAACCTGCACCCACACCGTGTTAGTGACATTGTCGAAGACATGCGGGAA
GCAGTGAGACACAAGATGGAAGAGAAGAAGAATGTTGTGCTGATTATAGA
GTGCCCCACTGACATAACAGCAGTAGTTGATGCATTCGGGTTGAAGCAGA
TCTTGTTGAACTTTTTAAGCAATTCCATGAAGTACACGGATCAGGGAAGC
ATTACAGTCAGAGTAACAAAACATGACAGCGGTGAAATCACTATTGGAGT
TCTCGACACCGGCTCAGGCATACCTGAGACTCACCAGAAGCTCATATTTC
AAGCCCATGTGCAATTGGATGCTGATGATATCGGGAGGCACGGCTCTCAT
GGCCTAGGGCTATACTTGGTCAGCATGCTCGCTCAGCGGATGAACTGGAC
AGTTGGCTTTCACTCCACCGTAGGAGTCGGCTCACATTTCTGGATAACTA
TACCAGCTTGA
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protein sequence of jgi.p|Trimin1|163570

>Trimin1|163570|e_gw1.26.9.1 ID=Trimin1|163570|e_gw1.26.9.1|Name=jgi.p|Trimin1|163570|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp
MAVLDGARANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTC
VADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMRE
AVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGS
ITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSH
GLGLYLVSMLAQRMNWTVGFHSTVGVGSHFWITIPA*
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mRNA from alignment at Contig_26:293100..293810+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1845 ID=mRNA_1845|Name=jgi.p|Trimin1|163570|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_26:293100..293810+ (Tribonema minus UTEX_B_3156 )
ATGGCAGTGCTGGATGGAGCGCGTGCAAACTCTATGCTTTCGTATGTAAA TCACGAAGTCCGCAATCCGCTAAATGTGATCAAGGGAATGGTGGAATACA CATTGTTGACGCTAGAGCAGTGCGCACTCCCCCCTGAGCTAGGTACATGC GTGGCAGACCTTACGGTTGCCTCCAGAGCATGCGACTTTCTAGAACACAT TGTCAGTGACATTCTCGTCTTACAAAGACTGGAGGCCGGAGCTCTCGTGC TCAACCTGCACCCACACCGTGTTAGTGACATTGTCGAAGACATGCGGGAA GCAGTGAGACACAAGATGGAAGAGAAGAAGAATGTTGTGCTGATTATAGA GTGCCCCACTGACATAACAGCAGTAGTTGATGCATTCGGGTTGAAGCAGA TCTTGTTGAACTTTTTAAGCAATTCCATGAAGTACACGGATCAGGGAAGC ATTACAGTCAGAGTAACAAAACATGACAGCGGTGAAATCACTATTGGAGT TCTCGACACCGGCTCAGGCATACCTGAGACTCACCAGAAGCTCATATTTC AAGCCCATGTGCAATTGGATGCTGATGATATCGGGAGGCACGGCTCTCAT GGCCTAGGGCTATACTTGGTCAGCATGCTCGCTCAGCGGATGAACTGGAC AGTTGGCTTTCACTCCACCGTAGGAGTCGGCTCACATTTCTGGATAACTA TACCAGCTTGA
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Coding sequence (CDS) from alignment at Contig_26:293100..293810+

>mRNA_1845 ID=mRNA_1845|Name=jgi.p|Trimin1|163570|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_26:293100..293810+ (Tribonema minus UTEX_B_3156 )
ATGGCAGTGCTGGATGGAGCGCGTGCAAACTCTATGCTTTCGTATGTAAA
TCACGAAGTCCGCAATCCGCTAAATGTGATCAAGGGAATGGTGGAATACA
CATTGTTGACGCTAGAGCAGTGCGCACTCCCCCCTGAGCTAGGTACATGC
GTGGCAGACCTTACGGTTGCCTCCAGAGCATGCGACTTTCTAGAACACAT
TGTCAGTGACATTCTCGTCTTACAAAGACTGGAGGCCGGAGCTCTCGTGC
TCAACCTGCACCCACACCGTGTTAGTGACATTGTCGAAGACATGCGGGAA
GCAGTGAGACACAAGATGGAAGAGAAGAAGAATGTTGTGCTGATTATAGA
GTGCCCCACTGACATAACAGCAGTAGTTGATGCATTCGGGTTGAAGCAGA
TCTTGTTGAACTTTTTAAGCAATTCCATGAAGTACACGGATCAGGGAAGC
ATTACAGTCAGAGTAACAAAACATGACAGCGGTGAAATCACTATTGGAGT
TCTCGACACCGGCTCAGGCATACCTGAGACTCACCAGAAGCTCATATTTC
AAGCCCATGTGCAATTGGATGCTGATGATATCGGGAGGCACGGCTCTCAT
GGCCTAGGGCTATACTTGGTCAGCATGCTCGCTCAGCGGATGAACTGGAC
AGTTGGCTTTCACTCCACCGTAGGAGTCGGCTCACATTTCTGGATAACTA
TACCAGCTTGA
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