mRNA_18433 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142242
Unique NamemRNA_18433
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|142242 vs. uniprot
Match: A0A836CIN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN7_9STRA)

HSP 1 Score: 295 bits (754), Expect = 6.760e-101
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 
Query:    1 DDADTQQQGWLEVAALASSYLDSSRLGAAGACGLVVQMLHRHAQDVKVQENGWKAAVALAYKDAGNRRRLCAAGVLEQLVQAVKGHMPHAGVQLIAWWAAGRLAVDQASRLKLGSAGACALLVQAFRAHRSSDVREVLQFAASKLTDDCQEN 456
            DDADTQQQGWLEVAALASSYLDSSRLGAAGACGLVVQMLHRHAQDVKVQENGWKAAVALAYKDAGNRRRLCAAGVLEQLVQAVKGHMPHAGVQLIAWWAAGRLAVDQASRLKLGSAGACALLVQAFRAHRSSDVREVLQFAASKLTDDCQEN
Sbjct:    1 DDADTQQQGWLEVAALASSYLDSSRLGAAGACGLVVQMLHRHAQDVKVQENGWKAAVALAYKDAGNRRRLCAAGVLEQLVQAVKGHMPHAGVQLIAWWAAGRLAVDQASRLKLGSAGACALLVQAFRAHRSSDVREVLQFAASKLTDDCQEN 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142242 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CIN7_9STRA6.760e-101100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_229contigContig_229:85811..86266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142242|gw1.229.1.1
Hectar predicted targeting categoryother localisation
TranscriptId142564
TrackFilteredModels1
ProteinId142242
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142242gene_18433Tribonema minus UTEX_B_3156 geneContig_229 85811..86266 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18433_1exon_18433_1Tribonema minus UTEX_B_3156 exonContig_229 85811..86266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18433CDS_18433Tribonema minus UTEX_B_3156 CDSContig_229 85811..86266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142242Trimin1|142242|gw1.229.1.1Tribonema minus UTEX_B_3156 polypeptideContig_229 85811..86266 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18433 ID=mRNA_18433|Name=jgi.p|Trimin1|142242|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_229:85811..86266+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGACGCCGACACTCAACAGCAGGGCTGGCTTGAGGTTGCTGCTCTGGC
CAGCAGCTATCTTGACAGCTCGAGGCTCGGCGCAGCGGGCGCATGCGGTT
TGGTCGTCCAGATGCTACACCGACACGCACAGGACGTCAAAGTGCAGGAA
AACGGCTGGAAGGCAGCTGTTGCCCTCGCTTACAAGGACGCTGGCAACAG
GAGGAGGCTGTGTGCAGCGGGTGTACTGGAGCAGCTGGTGCAAGCTGTGA
AGGGGCATATGCCGCATGCAGGCGTGCAGCTGATAGCGTGGTGGGCCGCT
GGTCGTCTCGCGGTCGACCAAGCGAGCAGGTTGAAACTCGGCAGTGCAGG
GGCGTGCGCTCTACTCGTGCAAGCTTTCAGAGCGCATCGAAGTAGTGATG
TAAGAGAGGTGCTGCAGTTCGCAGCTTCAAAGCTGACCGATGACTGCCAG
GAAAAT
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protein sequence of jgi.p|Trimin1|142242

>Trimin1|142242|gw1.229.1.1 ID=Trimin1|142242|gw1.229.1.1|Name=jgi.p|Trimin1|142242|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
DDADTQQQGWLEVAALASSYLDSSRLGAAGACGLVVQMLHRHAQDVKVQE
NGWKAAVALAYKDAGNRRRLCAAGVLEQLVQAVKGHMPHAGVQLIAWWAA
GRLAVDQASRLKLGSAGACALLVQAFRAHRSSDVREVLQFAASKLTDDCQ
EN
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mRNA from alignment at Contig_229:85811..86266+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18433 ID=mRNA_18433|Name=jgi.p|Trimin1|142242|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_229:85811..86266+ (Tribonema minus UTEX_B_3156 )
GACGACGCCGACACTCAACAGCAGGGCTGGCTTGAGGTTGCTGCTCTGGC
CAGCAGCTATCTTGACAGCTCGAGGCTCGGCGCAGCGGGCGCATGCGGTT
TGGTCGTCCAGATGCTACACCGACACGCACAGGACGTCAAAGTGCAGGAA
AACGGCTGGAAGGCAGCTGTTGCCCTCGCTTACAAGGACGCTGGCAACAG
GAGGAGGCTGTGTGCAGCGGGTGTACTGGAGCAGCTGGTGCAAGCTGTGA
AGGGGCATATGCCGCATGCAGGCGTGCAGCTGATAGCGTGGTGGGCCGCT
GGTCGTCTCGCGGTCGACCAAGCGAGCAGGTTGAAACTCGGCAGTGCAGG
GGCGTGCGCTCTACTCGTGCAAGCTTTCAGAGCGCATCGAAGTAGTGATG
TAAGAGAGGTGCTGCAGTTCGCAGCTTCAAAGCTGACCGATGACTGCCAG
GAAAAT
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Coding sequence (CDS) from alignment at Contig_229:85811..86266+

>mRNA_18433 ID=mRNA_18433|Name=jgi.p|Trimin1|142242|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_229:85811..86266+ (Tribonema minus UTEX_B_3156 )
GACGACGCCGACACTCAACAGCAGGGCTGGCTTGAGGTTGCTGCTCTGGC
CAGCAGCTATCTTGACAGCTCGAGGCTCGGCGCAGCGGGCGCATGCGGTT
TGGTCGTCCAGATGCTACACCGACACGCACAGGACGTCAAAGTGCAGGAA
AACGGCTGGAAGGCAGCTGTTGCCCTCGCTTACAAGGACGCTGGCAACAG
GAGGAGGCTGTGTGCAGCGGGTGTACTGGAGCAGCTGGTGCAAGCTGTGA
AGGGGCATATGCCGCATGCAGGCGTGCAGCTGATAGCGTGGTGGGCCGCT
GGTCGTCTCGCGGTCGACCAAGCGAGCAGGTTGAAACTCGGCAGTGCAGG
GGCGTGCGCTCTACTCGTGCAAGCTTTCAGAGCGCATCGAAGTAGTGATG
TAAGAGAGGTGCTGCAGTTCGCAGCTTCAAAGCTGACCGATGACTGCCAG
GAAAAT
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