mRNA_18424 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139204
Unique NamemRNA_18424
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: A0A835Z2J2_9STRA (SOS response UmuD protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J2_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.560e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR
Sbjct:   31 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 120
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: A0A1B3PNZ9_9BURK (Peptidase S24-like family protein n=1 Tax=Acidovorax sp. RAC01 TaxID=1842533 RepID=A0A1B3PNZ9_9BURK)

HSP 1 Score: 108 bits (269), Expect = 3.500e-28
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQA+F LR+RGES+RD GI DGD+V+VDRA+ P  G +VVA V +EF CK L+ R  R  L AANPTYPD+VP   Q ++V+GVV   ++
Sbjct:   56 PQASFLLRIRGESMRDVGIFDGDVVLVDRAITPRSGHVVVAVVENEFVCKTLQIRAGRIKLKAANPTYPDLVPKESQTVQVWGVVVAAIK 145
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: UPI000491FCDA (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ottowia thiooxydans TaxID=219182 RepID=UPI000491FCDA)

HSP 1 Score: 107 bits (266), Expect = 8.690e-28
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQATF +R+RGES+RDAGI DGD ++VDRALKP  G +VVA V  EFT K L  R  R  L AANPTYPDI P  +Q + V+GVVT  ++
Sbjct:   51 PQATFLIRVRGESMRDAGIFDGDTLIVDRALKPRHGHIVVAVVDGEFTVKTLYQRAGRIKLKAANPTYPDISPGNDQTIEVWGVVTSSIK 140
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: A0A1B3PLD6_9BURK (Peptidase S24-like family protein n=3 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A1B3PLD6_9BURK)

HSP 1 Score: 107 bits (266), Expect = 8.930e-28
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQATF LRLRG+S++DAG+ DGD++VV+RALKPV  D+VVA V  EFTCK L  +  R  L AANPTYP+IVP   Q + ++GVVT  ++
Sbjct:   49 PQATFLLRLRGDSMKDAGLFDGDLLVVNRALKPVHQDVVVAVVDGEFTCKSLWLKYGRMKLVAANPTYPEIVPKDGQTVEIWGVVTASIK 138
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: A2SMN8_METPP (SOS response UmuD protein, Serine peptidase, MEROPS family S24 n=2 Tax=Methylibium TaxID=316612 RepID=A2SMN8_METPP)

HSP 1 Score: 106 bits (265), Expect = 1.010e-27
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQ+TF +R+RG S+R+AGI DGD+V+VDRA+ P  G +VVA V HEFT K L  RG R  L AANPTYPDIVP   Q + V+GVVT  ++
Sbjct:   44 PQSTFLMRVRGPSMREAGIDDGDVVLVDRAITPCHGHVVVAVVDHEFTVKRLWKRGSRVKLQAANPTYPDIVPKDGQEVEVWGVVTNAIK 133
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: UPI00145F3810 (translesion error-prone DNA polymerase V autoproteolytic subunit n=2 Tax=unclassified Acidovorax TaxID=2684926 RepID=UPI00145F3810)

HSP 1 Score: 104 bits (260), Expect = 8.100e-27
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQATFF R+RG+S+RDAGI DG I+ VDRA++P  G +VVA V  E T K+L  RG R  L AANPTYPDI+P   Q + V+GVV+G V+
Sbjct:   55 PQATFFWRVRGDSMRDAGIEDGSIIAVDRAIRPRHGCIVVALVDGECTVKYLYQRGGRIKLRAANPTYPDIIPRDSQTVEVWGVVSGCVK 144
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: A0A519HPZ4_9BURK (Translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519HPZ4_9BURK)

HSP 1 Score: 103 bits (258), Expect = 1.460e-26
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQAT+ LR+ G+S+RDAGI DGD +V +RAL+   G++VVA V  EFTCK+L  R  R  L AANPT+P+IVP   Q + VFGVVT  ++
Sbjct:   52 PQATYLLRVAGDSMRDAGIFDGDTIVCNRALRARHGNVVVATVDGEFTCKYLHQRAGRVKLRAANPTFPEIVPREGQTLEVFGVVTATIK 141
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: H0BS43_9BURK (Putative prophage repressor n=1 Tax=Acidovorax sp. NO-1 TaxID=512030 RepID=H0BS43_9BURK)

HSP 1 Score: 103 bits (257), Expect = 2.310e-26
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQATF LRLRG+S+R+AG+ DGD++VVDRALKP   D+VVA V  EFTCK L  +     L AANPT+P+IVP   Q + ++GVVT  ++
Sbjct:   53 PQATFLLRLRGDSMREAGLFDGDLLVVDRALKPAHQDVVVAVVDGEFTCKSLWLKFGHMKLVAANPTFPEIVPKDGQTVEIWGVVTASIK 142
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: UPI00164DFB59 (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ramlibacter sp. USB13 TaxID=2764187 RepID=UPI00164DFB59)

HSP 1 Score: 102 bits (255), Expect = 2.310e-26
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            P ATFF R+RG S+  AG+ DGDI+VV+RAL PV GD+VVAEV ++FT K+L  R  R  L AA+PT+PDIVP   Q + + GVVT  +R
Sbjct:   32 PAATFFWRVRGTSMHGAGVADGDILVVNRALDPVHGDIVVAEVDNDFTVKYLHRRAGRVKLVAADPTFPDIVPREGQVLTICGVVTAAIR 121
[Close]
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Match: A0A2Z2LGS0_9BURK (Repressor n=1 Tax=Diaphorobacter nitroreducens TaxID=164759 RepID=A0A2Z2LGS0_9BURK)

HSP 1 Score: 102 bits (255), Expect = 3.820e-26
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 270
            PQATF LR+RG S+ DAG+ DGD ++VDRA+KP  G +VVA V  EFT K L+ R  R  L AANPT+PDIVP   Q + V+GVVT  ++
Sbjct:   50 PQATFLLRVRGLSMVDAGLGDGDTIIVDRAIKPANGHIVVAVVDGEFTVKHLQMRAGRVKLKAANPTFPDIVPKDGQTIEVWGVVTACIK 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139204 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2J2_9STRA1.560e-58100.00SOS response UmuD protein (Fragment) n=2 Tax=Tribo... [more]
A0A1B3PNZ9_9BURK3.500e-2856.67Peptidase S24-like family protein n=1 Tax=Acidovor... [more]
UPI000491FCDA8.690e-2860.00translesion error-prone DNA polymerase V autoprote... [more]
A0A1B3PLD6_9BURK8.930e-2858.89Peptidase S24-like family protein n=3 Tax=unclassi... [more]
A2SMN8_METPP1.010e-2758.89SOS response UmuD protein, Serine peptidase, MEROP... [more]
UPI00145F38108.100e-2758.89translesion error-prone DNA polymerase V autoprote... [more]
A0A519HPZ4_9BURK1.460e-2655.56Translesion error-prone DNA polymerase V autoprote... [more]
H0BS43_9BURK2.310e-2656.67Putative prophage repressor n=1 Tax=Acidovorax sp.... [more]
UPI00164DFB592.310e-2656.67translesion error-prone DNA polymerase V autoprote... [more]
A0A2Z2LGS0_9BURK3.820e-2656.67Repressor n=1 Tax=Diaphorobacter nitroreducens Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_400contigContig_400:13497..13766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139204|gw1.400.1.1
BRITEko00000,ko01000,ko01002,ko03400
KEGG koko:K03503
DescriptionPeptidase S24-like
COG categoryKT
Max annot lvl28216|Betaproteobacteria
EggNOG OGsCOG1974@1|root,COG1974@2|Bacteria,1MZFA@1224|Proteobacteria,2VU86@28216|Betaproteobacteria,1KMMJ@119065|unclassified Burkholderiales
Evalue1.66e-28
Seed ortholog420662.Mpe_B0048
Hectar predicted targeting categoryother localisation
TranscriptId139526
TrackFilteredModels1
ProteinId139204
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139204gene_18424Tribonema minus UTEX_B_3156 geneContig_400 13497..13766 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18424_1exon_18424_1Tribonema minus UTEX_B_3156 exonContig_400 13497..13766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18424CDS_18424Tribonema minus UTEX_B_3156 CDSContig_400 13497..13766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139204Trimin1|139204|gw1.400.1.1Tribonema minus UTEX_B_3156 polypeptideContig_400 13497..13766 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18424 ID=mRNA_18424|Name=jgi.p|Trimin1|139204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_400:13497..13766+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCAAGCTACGTTCTTCCTTCGGTTGCGCGGTGAGTCGCTGCGGGATGC
GGGTATCTTGGACGGGGATATTGTGGTGGTGGACAGGGCGCTCAAGCCTG
TGGGCGGCGACCTGGTCGTTGCAGAGGTGGGACATGAGTTCACTTGCAAG
TTCTTGCGTTATCGGGGCCGTAGGCCGGTCCTTTCGGCGGCCAACCCCAC
GTATCCAGATATCGTTCCTGATGCAGAGCAGGGCATGCGGGTCTTTGGGG
TTGTCACGGGAATAGTGCGA
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protein sequence of jgi.p|Trimin1|139204

>Trimin1|139204|gw1.400.1.1 ID=Trimin1|139204|gw1.400.1.1|Name=jgi.p|Trimin1|139204|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
PQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCK
FLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR
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mRNA from alignment at Contig_400:13497..13766+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18424 ID=mRNA_18424|Name=jgi.p|Trimin1|139204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_400:13497..13766+ (Tribonema minus UTEX_B_3156 )
CCGCAAGCTACGTTCTTCCTTCGGTTGCGCGGTGAGTCGCTGCGGGATGC
GGGTATCTTGGACGGGGATATTGTGGTGGTGGACAGGGCGCTCAAGCCTG
TGGGCGGCGACCTGGTCGTTGCAGAGGTGGGACATGAGTTCACTTGCAAG
TTCTTGCGTTATCGGGGCCGTAGGCCGGTCCTTTCGGCGGCCAACCCCAC
GTATCCAGATATCGTTCCTGATGCAGAGCAGGGCATGCGGGTCTTTGGGG
TTGTCACGGGAATAGTGCGA
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Coding sequence (CDS) from alignment at Contig_400:13497..13766+

>mRNA_18424 ID=mRNA_18424|Name=jgi.p|Trimin1|139204|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_400:13497..13766+ (Tribonema minus UTEX_B_3156 )
CCGCAAGCTACGTTCTTCCTTCGGTTGCGCGGTGAGTCGCTGCGGGATGC
GGGTATCTTGGACGGGGATATTGTGGTGGTGGACAGGGCGCTCAAGCCTG
TGGGCGGCGACCTGGTCGTTGCAGAGGTGGGACATGAGTTCACTTGCAAG
TTCTTGCGTTATCGGGGCCGTAGGCCGGTCCTTTCGGCGGCCAACCCCAC
GTATCCAGATATCGTTCCTGATGCAGAGCAGGGCATGCGGGTCTTTGGGG
TTGTCACGGGAATAGTGCGA
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